Rh6BG168000

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008366
Physical Location & Seq
Forward (+)
27576322 .. 27577360
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG168000.1

Sequence Viewer

Length: 336 bp
ATGACGACTCACCGGCGGCGACCGAGTCTTCATCCAAGTCTCCGGCAACCCAACGACGATCCCGATTCGATCTTGGACGACGCGCCTGAGGACGAAGAAGGTGACCACTATTACGACCAGGCTTTCGGAAACTCTGAGGCGGCGGCTCAGCCCCTGCTGGAGAGACTGAGGAAGGAGATTTTGGACCTCGGGTTTCCCGACGACGGTTACAACTATTTGAACCATTTGAGGGAGATTAAGAACACCGGCGGTGGCTCAGCCTATTACTCCAACCCCAAGGCTAAGCTCGAGCAGCTTCCGCATGACGTCAAGTGCAGGACAAACTTTCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

111

Amino Acids

12.71

Weight (kDa)

5.01

Isoelectric Point (pI)

60.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 309
AccII CGCG 1 cut(s) 83
AciI CCGC 5 cut(s) 16, 140, 143, 249, 299
AclWI GGATC 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 203, 229
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 2 cut(s) 286, 295
AluI AGCT 2 cut(s) 286, 295
Alw26I GTCTC 2 cut(s) 44, 157
AlwI GGATC 1 cut(s) 53
AlwNI CAGNNNCTG 1 cut(s) 154
Ama87I CYCGRG 2 cut(s) 188, 287
ApeKI GCWGC 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 113
AvaI CYCGRG 2 cut(s) 188, 287
AvaII GGWCC 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 44, 157
BisI GCNGC 4 cut(s) 17, 141, 144, 293
BlpI GCTNAGC 3 cut(s) 147, 256, 282
BlsI GCNGC 4 cut(s) 18, 142, 145, 294
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 1 cut(s) 184
BmeT110I CYCGRG 2 cut(s) 188, 287
BmgT120I GGNCC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 179
Bpu1102I GCTNAGC 3 cut(s) 147, 256, 282
BsaHI GRCGYC 1 cut(s) 306
BsaJI CCNNGG 2 cut(s) 187, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 229
Bse118I RCCGGY 2 cut(s) 12, 245
Bse21I CCTNAGG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 187, 276
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 203, 229
BseMII CTCAG 5 cut(s) 78, 126, 158, 161, 270
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 23
BsiEI CGRYCG 1 cut(s) 23
BsiHKCI CYCGRG 2 cut(s) 188, 287
BsiSI CCGG 3 cut(s) 13, 43, 246
BslI CCNNNNNNNGG 2 cut(s) 203, 229
BsmAI GTCTC 2 cut(s) 44, 157
BsoBI CYCGRG 2 cut(s) 188, 287
Bsp143I GATC 2 cut(s) 58, 69
Bsp1720I GCTNAGC 3 cut(s) 147, 256, 282
BspACI CCGC 5 cut(s) 16, 140, 143, 249, 299
BspCNI CTCAG 5 cut(s) 79, 127, 159, 160, 269
BspFNI CGCG 1 cut(s) 83
BspPI GGATC 1 cut(s) 53
BsrFI RCCGGY 2 cut(s) 12, 245
BssAI RCCGGY 2 cut(s) 12, 245
BssECI CCNNGG 2 cut(s) 187, 276
BssMI GATC 2 cut(s) 58, 69
BssNI GRCGYC 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 306
BstDEI CTNAG 6 cut(s) 87, 135, 147, 167, 256, 282
BstEII GGTNACC 1 cut(s) 101
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 2 cut(s) 61, 72
BstMAI GTCTC 2 cut(s) 44, 157
BstMBI GATC 2 cut(s) 58, 69
BstMCI CGRYCG 1 cut(s) 23
BstMWI GCNNNNNNNGC 2 cut(s) 292, 298
BstNI CCWGG 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 117
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 20
Bsu36I CCTNAGG 1 cut(s) 87
BtsCI GGATG 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 2 cut(s) 12, 245
Cfr13I GGNCC 1 cut(s) 184
CseI GACGC 1 cut(s) 89
CviAII CATG 1 cut(s) 302
CviJI RGCY 8 cut(s) 122, 146, 151, 255, 260, 281, 286, 295
CviKI_1 RGCY 8 cut(s) 122, 146, 151, 255, 260, 281, 286, 295
DdeI CTNAG 6 cut(s) 87, 135, 147, 167, 256, 282
DpnI GATC 2 cut(s) 60, 71
DpnII GATC 2 cut(s) 58, 69
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 184
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 2 cut(s) 188, 287
Eco91I GGTNACC 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 305
FaiI YATR 1 cut(s) 303
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 4 cut(s) 17, 141, 144, 293
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 4 cut(s) 17, 141, 144, 293
GlaI GCGC 1 cut(s) 84
GluI GCNGC 4 cut(s) 17, 141, 144, 293
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 3 cut(s) 13, 43, 246
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 1 cut(s) 305
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 3 cut(s) 7, 25, 65
HpaII CCGG 3 cut(s) 13, 43, 246
HphI GGTGA 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 128, 136
Hpy188III TCNNGA 3 cut(s) 62, 197, 329
Hpy99I CGWCG 4 cut(s) 59, 83, 203, 206
HpyAV CCTTC 2 cut(s) 92, 166
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 298
HpyF3I CTNAG 6 cut(s) 87, 135, 147, 167, 256, 282
HpySE526I ACGT 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 1 cut(s) 305
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 2 cut(s) 58, 69
LpnPI CCDG 9 cut(s) 26, 56, 99, 104, 131, 143, 167, 259, 301
Lsp1109I GCAGC 1 cut(s) 304
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 101, 206
MalI GATC 2 cut(s) 60, 71
MboI GATC 2 cut(s) 58, 69
MboII GAAGA 2 cut(s) 20, 107
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 82, 130, 162, 197, 222
MseI TTAA 1 cut(s) 237
MspI CCGG 3 cut(s) 13, 43, 246
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 2 cut(s) 292, 298
NdeII GATC 2 cut(s) 58, 69
NlaIII CATG 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 287
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 195
PfeI GAWTC 1 cut(s) 65
PflFI GACNNNGTC 1 cut(s) 24
PkrI GCNGC 4 cut(s) 18, 142, 145, 294
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 101
PspGI CCWGG 1 cut(s) 117
PspPI GGNCC 1 cut(s) 184
PspXI VCTCGAGB 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 154
PsyI GACNNNGTC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 4 cut(s) 17, 141, 144, 293
Sau3AI GATC 2 cut(s) 58, 69
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 119
SetI ASST 5 cut(s) 103, 189, 288, 297, 309
Sfr274I CTCGAG 1 cut(s) 287
SgrAI CRCCGGYG 2 cut(s) 12, 245
SinI GGWCC 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 287, 329
SmoI CTYRAG 2 cut(s) 287, 329
SsiI CCGC 5 cut(s) 16, 140, 143, 249, 299
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 309
TaqI TCGA 2 cut(s) 68, 288
TaqII GACCGA 1 cut(s) 37
TauI GCSGC 3 cut(s) 19, 143, 146
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 20
Tth111I GACNNNGTC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 287
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.