Rorug06G0312500

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008366
Physical Location & Seq
Forward (+)
46392441 .. 46395512
3072 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0312500.1

Sequence Viewer

Length: 870 bp
ATGACTGTATTCAAGTCTCTACTTACTTCCAAGTACATTATCCCCTATTTGGATGACCATGAAGCCTTGCGATATCCTCCGGATGATTATCCTTTCATCCTTGCTGACCATTGGACAGAATTTGTGAAAATGCGGACGAAGGCCTCATTCTTGGAAAAGCGTCGTGAGCAACAAGAGAGGCGCAGCTTGAATAAGTATCCTCATAGAATGTCCCGTAAGGGATATGCAGGGTTGGAGGATGAGTTGGCTACCAGAATGAGTGACGAAGAAGTTGATAGGGCCACTTTGTGGATAAAAGGACGGCAAACAAAGGATGGCAGTTTCAAGGATGAGGAGTCAAAAAAGACTGCTGAAAAGATAGCAAACTTGAAGAGAAAGGTTGCTAGTGGAGAACTAAATGCTGAAGGAACAAATGATGTCTTGACATTGGCTTTGGGGACTCCAGAGCATGGGGGAAGAGTGCGGGGAATAGGAGGTTTTGTCACTCCCTCTACTTACTTCCACCTCCCTAAACGTAGAAAGGAGAGCATAGAAGCTACTGTCAGAGTTAGTGTGCAGAAAATATTGTTAGAGGAGAGAGAGAAGATAGTAGAGGAGGCAAGGGAGAAGATAGTAGAGGAGGCAAGGGAGAGGATAATTGAGGAAGCGAAAGAAAAAATACTTGCAGATGAGCGGGCTATGTGGGAGGCCAAGTTTGCTGAACTTGAAGCAAAGGTAAAAGGAAAAGAAGGTGCAACTATTCAGCCACATGCATCTGCCCAAGGAAGTTGCTCAAGGACAGTAGATGAGATTGCTCAAGAATCGGATAAAGCTCCGTTGGAAGAAGTAGCAAACAATGTGGATGGAACTAAAATTCGGAGCATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

289

Amino Acids

32.99

Weight (kDa)

6.65

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 35 - 163 6e-15 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 288, 449
AccBSI CCGCTC 1 cut(s) 673
AccIII TCCGGA 1 cut(s) 79
AciI CCGC 3 cut(s) 133, 463, 673
AcsI RAATTY 2 cut(s) 119, 852
AcuI CTGAAG 1 cut(s) 423
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 49, 288, 449
AgsI TTSAA 5 cut(s) 13, 190, 325, 370, 707
AluBI AGCT 3 cut(s) 186, 536, 812
AluI AGCT 3 cut(s) 186, 536, 812
Alw26I GTCTC 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 3 cut(s) 141, 279, 687
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 2 cut(s) 119, 852
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 195
BccI CCATC 2 cut(s) 308, 836
BceAI ACGGC 1 cut(s) 317
BciVI GTATCC 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 384
BfuI GTATCC 1 cut(s) 207
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 426
BpuEI CTTGAG 2 cut(s) 757, 780
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 760
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 6 cut(s) 227, 257, 465, 495, 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 288, 449
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 760
BseGI GGATG 7 cut(s) 58, 88, 96, 244, 319, 334, 847
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 3 cut(s) 49, 288, 449
BseRI GAGGAG 4 cut(s) 347, 587, 608, 632
BseXI GCAGC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 575
BshFI GGCC 3 cut(s) 143, 281, 689
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 2 cut(s) 196, 451
BslI CCNNNNNNNGG 3 cut(s) 49, 288, 449
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 2 cut(s) 196, 451
BsnI GGCC 3 cut(s) 143, 281, 689
Bsp13I TCCGGA 1 cut(s) 79
BspACI CCGC 3 cut(s) 133, 463, 673
BspANI GGCC 3 cut(s) 143, 281, 689
BspEI TCCGGA 1 cut(s) 79
BsrBI CCGCTC 1 cut(s) 673
BssECI CCNNGG 1 cut(s) 760
BssT1I CCWWGG 1 cut(s) 760
Bst4CI ACNGT 3 cut(s) 7, 541, 781
Bst6I CTCTTC 2 cut(s) 365, 451
BstC8I GCNNGC 1 cut(s) 675
BstF5I GGATG 7 cut(s) 58, 88, 96, 244, 319, 334, 847
BstHHI GCGC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 166, 695
BstNSI RCATGY 1 cut(s) 752
BstV1I GCAGC 1 cut(s) 195
BsuI GTATCC 1 cut(s) 207
BsuRI GGCC 3 cut(s) 143, 281, 689
BtsCI GGATG 7 cut(s) 58, 88, 96, 244, 319, 334, 847
Cac8I GCNNGC 1 cut(s) 675
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 279
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 34
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviAII CATG 3 cut(s) 59, 449, 749
CviQI GTAC 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 288
Eam1104I CTCTTC 2 cut(s) 365, 451
EarI CTCTTC 2 cut(s) 365, 451
Eco130I CCWWGG 1 cut(s) 760
Eco147I AGGCCT 1 cut(s) 143
Eco32I GATATC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 423
EcoRV GATATC 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 760
EcoT22I ATGCAT 1 cut(s) 754
ErhI CCWWGG 1 cut(s) 760
FaeI CATG 3 cut(s) 62, 452, 752
FaiI YATR 7 cut(s) 60, 204, 225, 450, 530, 680, 750
FaqI GGGAC 2 cut(s) 196, 451
FatI CATG 3 cut(s) 58, 448, 748
FauI CCCGC 2 cut(s) 456, 666
Fnu4HI GCNGC 1 cut(s) 184
FokI GGATG 7 cut(s) 65, 83, 95, 251, 326, 341, 854
Fsp4HI GCNGC 1 cut(s) 184
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 3 cut(s) 143, 281, 689
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 149
HhaI GCGC 1 cut(s) 183
Hin1II CATG 3 cut(s) 62, 452, 752
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 3 cut(s) 335, 439, 800
HpaII CCGG 1 cut(s) 80
Hpy188I TCNGA 3 cut(s) 545, 805, 858
Hpy188III TCNNGA 5 cut(s) 80, 164, 421, 443, 797
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 3 cut(s) 133, 398, 722
HpyCH4III ACNGT 3 cut(s) 7, 541, 781
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 5 cut(s) 227, 556, 665, 734, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 695
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 3 cut(s) 62, 452, 752
HspAI GCGC 1 cut(s) 181
Kpn2I TCCGGA 1 cut(s) 79
LmnI GCTCC 2 cut(s) 817, 858
LpnPI CCDG 4 cut(s) 93, 213, 265, 456
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 1 cut(s) 761
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 2 cut(s) 260, 481
MbiI CCGCTC 1 cut(s) 673
MboII GAAGA 6 cut(s) 278, 382, 468, 595, 619, 833
MluCI AATT 3 cut(s) 119, 636, 852
MlyI GAGTC 2 cut(s) 344, 433
MmeI TCCRAC 2 cut(s) 213, 798
Mph1103I ATGCAT 1 cut(s) 754
MroI TCCGGA 1 cut(s) 79
MseI TTAA 1 cut(s) 868
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 166, 695
NlaIII CATG 3 cut(s) 62, 452, 752
NmuCI GTSAC 2 cut(s) 260, 481
NsiI ATGCAT 1 cut(s) 754
NspI RCATGY 1 cut(s) 752
PceI AGGCCT 1 cut(s) 143
PfeI GAWTC 1 cut(s) 800
PflMI CCANNNNNTGG 2 cut(s) 288, 449
PkrI GCNGC 1 cut(s) 185
PleI GAGTC 2 cut(s) 343, 433
PpsI GAGTC 2 cut(s) 343, 433
PspPI GGNCC 1 cut(s) 279
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 868
SatI GCNGC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 279
SchI GAGTC 2 cut(s) 344, 433
SetI ASST 9 cut(s) 188, 381, 478, 507, 517, 538, 717, 733, 814
SfaNI GCATC 1 cut(s) 761
SmlI CTYRAG 2 cut(s) 772, 795
SmoI CTYRAG 2 cut(s) 772, 795
Sse9I AATT 3 cut(s) 119, 636, 852
SseBI AGGCCT 1 cut(s) 143
SsiI CCGC 3 cut(s) 133, 463, 673
SspI AATATT 1 cut(s) 564
SspMI CTAG 1 cut(s) 384
StuI AGGCCT 1 cut(s) 143
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 3 cut(s) 7, 541, 781
TaiI ACGT 1 cut(s) 517
TasI AATT 3 cut(s) 119, 636, 852
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 1 cut(s) 868
Tru9I TTAA 1 cut(s) 868
TseFI GTSAC 2 cut(s) 260, 481
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 2 cut(s) 260, 481
TspDTI ATGAA 2 cut(s) 75, 85
TspGWI ACGGA 1 cut(s) 804
Van91I CCANNNNNTGG 2 cut(s) 288, 449
XapI RAATTY 2 cut(s) 119, 852
XceI RCATGY 1 cut(s) 752
XspI CTAG 1 cut(s) 384
Zsp2I ATGCAT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.