Rh6AG425000

Protein LTV1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008366
Physical Location & Seq
Forward (+)
61713444 .. 61715396
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG425000.1

Sequence Viewer

Length: 1524 bp
ATGGGGAGAAAGAAGAAGTTCATTGACAAGAAAAAGTCATCTACTTTCCAGTTAGTCGCCCGAGACTCCTCCGACCCCAACTACGACGACTCACCCGGCGGCGACCGTGTCTTCATCCAAGTCTCCGGCCGACCTAACGACGATCCCGATTCTATCTTCGCCGACGCTGCTGAGGACGAAGAAGGCGACCACTATTACGACCAGGCTTTCGGAAACTCTGAGGCGGCGGCTCAGCCCCTGCCGGAGAAACTGAGGAAGGAGATTCTGGACCTCGGGTTTCCCGACGACGGTTACAACTATTTGAACCATTTGAGGGAGATTAAGAACACCGGCGGTGGCTCCGCCTATTACTCCAACCCCAAGGCTAAGCTCGAGCAGCTTCCGCATGACGTCAAGGCATATGATGCTTCAAGATTGCGAATTTCGGAGAATGAGGCTCCGGATGAGAATGCTATTTACAATGTGGCGTCTAAGACGGTCAATGTGAGGGTTAAGAAAGCTGTTGATCCGGAAGTTTCTGCATTGCTTGATGCTGATAGCGATGCTTCGCTGTTCGGTTCTGATGATGAGGATTTGGAAGAGGATTTTGTGGTTAAGGCTAACCTTGCTGATGGAGATGAAGAGGAGGATGTGTGTATAGGTGATGGGCCAAGTTTTGTTGCGCAATCGGAGAACAACAATGCAAGGAATGAAGTTGGTGTGGTTGGAAGAAATTGCGTGGAGAGAGGAAAGGGTGACTTTGTGGTAGATGATCCACGAGCTCGTCGGGATGTGGATGCAGAATTTGATATGGTTTTAAGTCGGGAATATGACAATGACGACGATGACGATGACTATGAAGGTGGTGATCATGACGATGATTATTTTTACGGAGATGAAGTGGATGAATCCATTGAGGAGAAGCTCAAGAACGTCAAACTTAATGACTGCGTGAAGGATGACTTTGAGCTTAATGAATATGAGGTTCCGGGAGATGATGAGGAGAAACAGAAAACGAAGCAGCTTGGGAAGATATATGAGGATGAAGATCAAGAGGACAAGGTGGTAATTGTAGAGGAATCTAGTGATGAATCAGAAAAATGGGACTGTGAGACTGTTATTACTACATATTCAAATCTTGAGAACCATCCTGCGAAAATCGGAGCTCCAGAGCTAAGTAGAAAGAAGAAGCAGCTTTCAGAAACCGTTTTTGGAGGCTTGGATGCCTCCAATAATTTGATAAAGCTTGGGGGAAGACAGAGGCTGCCTGTGGACTTCTTGCCTCGTAATAGAAGACCTGCTGCTACAGAGAGGGCGACAGAGAAGGTGGAAGATATAGGGAGCTTGAAAACTGAGCAGCAGAAAAGGAAGCAACTTGGTCAGGAGTCAAAGGAGGAGAAGAAAGAGCGGAAGGCAGCTGTCAAGGAGGAAAGACGTGAGGCACGGCGCGCTAAAAAGGAATTGAAGGAACTTTACAAGGGTGAAGCGCAGCATGCTCAGAGAGTAGCTGCTATATCTGGTCCTTCTTCCAAACGTCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTV

Protein Analysis

507

Amino Acids

57.03

Weight (kDa)

4.6

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
Acc16I TGCGCA 1 cut(s) 663
Acc36I ACCTGC 1 cut(s) 1285
AccBSI CCGCTC 1 cut(s) 1387
AccII CGCG 1 cut(s) 1428
AccIII TCCGGA 2 cut(s) 439, 508
AciI CCGC 7 cut(s) 99, 224, 227, 333, 342, 383, 1387
AclWI GGATC 3 cut(s) 137, 500, 746
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 2 cut(s) 420, 782
AcyI GRCGYC 2 cut(s) 390, 467
AfiI CCNNNNNNNGG 2 cut(s) 287, 313
AgsI TTSAA 5 cut(s) 304, 411, 1113, 1327, 1444
AjiI CACGTC 1 cut(s) 1415
AjnI CCWGG 1 cut(s) 201
AjuI GAANNNNNNNTTGG 2 cut(s) 1173, 1205
Alw21I GWGCWC 2 cut(s) 763, 1147
Alw26I GTCTC 3 cut(s) 57, 127, 1085
AlwI GGATC 3 cut(s) 137, 500, 746
AlwNI CAGNNNCTG 2 cut(s) 238, 1243
Ama87I CYCGRG 3 cut(s) 60, 272, 371
Aor13HI TCCGGA 2 cut(s) 439, 508
AoxI GGCC 2 cut(s) 127, 647
ApoI RAATTY 2 cut(s) 420, 782
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 4 cut(s) 664, 1428, 1430, 1468
AspS9I GGNCC 3 cut(s) 268, 647, 1499
AsuC2I CCSGG 2 cut(s) 96, 969
AsuHPI GGTGA 5 cut(s) 84, 653, 746, 857, 1472
AvaI CYCGRG 3 cut(s) 60, 272, 371
AvaII GGWCC 2 cut(s) 268, 1499
BanII GRGCYC 2 cut(s) 763, 1147
BarI GAAGNNNNNNTAC 2 cut(s) 1436, 1468
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 3 cut(s) 103, 1240, 1279
Bbv12I GWGCWC 2 cut(s) 763, 1147
BbvCI CCTCAGC 1 cut(s) 171
BccI CCATC 3 cut(s) 605, 638, 1134
BceAI ACGGC 1 cut(s) 1439
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 2 cut(s) 96, 969
BcoDI GTCTC 3 cut(s) 57, 127, 1085
BfaI CTAG 1 cut(s) 1062
BfmI CTRYAG 1 cut(s) 1284
BfuAI ACCTGC 1 cut(s) 1285
BlpI GCTNAGC 2 cut(s) 231, 366
Bme1390I CCNGG 3 cut(s) 96, 203, 969
Bme18I GGWCC 2 cut(s) 268, 1499
BmeT110I CYCGRG 3 cut(s) 60, 272, 371
BmgBI CACGTC 1 cut(s) 1415
BmgT120I GGNCC 3 cut(s) 268, 647, 1499
BmiI GGNNCC 3 cut(s) 340, 438, 966
BmrFI CCNGG 3 cut(s) 96, 203, 969
BmsI GCATC 5 cut(s) 394, 520, 532, 766, 1192
BpiI GAAGAC 3 cut(s) 103, 1240, 1279
BpmI CTGGAG 1 cut(s) 1131
Bpu10I CCTNAGC 1 cut(s) 171
Bpu1102I GCTNAGC 2 cut(s) 231, 366
BpuEI CTTGAG 2 cut(s) 890, 1139
BpuMI CCSGG 2 cut(s) 96, 969
BsaBI GATNNNNATC 1 cut(s) 1026
BsaHI GRCGYC 2 cut(s) 390, 467
BsaJI CCNNGG 2 cut(s) 271, 360
BsaWI WCCGGW 2 cut(s) 439, 508
BsaXI ACNNNNNCTCC 4 cut(s) 617, 647, 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 313
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 1026
BseAI TCCGGA 2 cut(s) 439, 508
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 271, 360
BseJI GATNNNNATC 1 cut(s) 1026
BseLI CCNNNNNNNGG 2 cut(s) 287, 313
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 6 cut(s) 162, 210, 242, 245, 1323, 1490
BseNI ACTGG 1 cut(s) 49
BsePI GCGCGC 1 cut(s) 1426
BseRI GAGGAG 5 cut(s) 58, 638, 911, 995, 1388
BseX3I CGGCCG 1 cut(s) 127
Bsh1236I CGCG 1 cut(s) 1428
Bsh1285I CGRYCG 2 cut(s) 106, 130
BshFI GGCC 2 cut(s) 129, 649
BsiEI CGRYCG 2 cut(s) 106, 130
BsiHKAI GWGCWC 2 cut(s) 763, 1147
BsiHKCI CYCGRG 3 cut(s) 60, 272, 371
BsiSI CCGG 7 cut(s) 96, 126, 242, 330, 440, 509, 968
BslFI GGGAC 1 cut(s) 1097
BslI CCNNNNNNNGG 2 cut(s) 287, 313
BsmAI GTCTC 3 cut(s) 57, 127, 1085
BsmFI GGGAC 1 cut(s) 1097
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 2 cut(s) 129, 649
BsoBI CYCGRG 3 cut(s) 60, 272, 371
Bsp1286I GDGCHC 2 cut(s) 763, 1147
Bsp13I TCCGGA 2 cut(s) 439, 508
Bsp143I GATC 5 cut(s) 142, 505, 751, 847, 1027
Bsp1720I GCTNAGC 2 cut(s) 231, 366
BspACI CCGC 7 cut(s) 99, 224, 227, 333, 342, 383, 1387
BspANI GGCC 2 cut(s) 129, 649
BspCNI CTCAG 6 cut(s) 163, 211, 243, 244, 1324, 1489
BspEI TCCGGA 2 cut(s) 439, 508
BspFNI CGCG 1 cut(s) 1428
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 3 cut(s) 340, 438, 966
BspMI ACCTGC 1 cut(s) 1285
BspPI GGATC 3 cut(s) 137, 500, 746
BsrBI CCGCTC 1 cut(s) 1387
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 329
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 271, 360
BssHII GCGCGC 1 cut(s) 1426
BssMI GATC 5 cut(s) 142, 505, 751, 847, 1027
BssNI GRCGYC 2 cut(s) 390, 467
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 6 cut(s) 107, 290, 478, 1088, 1096, 1186
Bst6I CTCTTC 2 cut(s) 573, 615
BstACI GRCGYC 2 cut(s) 390, 467
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 1428, 1473
BstDEI CTNAG 9 cut(s) 171, 219, 231, 251, 366, 471, 1154, 1332, 1476
BstFNI CGCG 1 cut(s) 1428
BstHHI GCGC 4 cut(s) 664, 1428, 1430, 1468
BstKTI GATC 5 cut(s) 145, 508, 754, 850, 1030
BstMAI GTCTC 3 cut(s) 57, 127, 1085
BstMBI GATC 5 cut(s) 142, 505, 751, 847, 1027
BstMCI CGRYCG 2 cut(s) 106, 130
BstMWI GCNNNNNNNGC 7 cut(s) 167, 376, 382, 404, 605, 1427, 1472
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 1475
BstSCI CCNGG 3 cut(s) 94, 201, 967
BstSFI CTRYAG 1 cut(s) 1284
BstUI CGCG 1 cut(s) 1428
BstV2I GAAGAC 3 cut(s) 103, 1240, 1279
BstZI CGGCCG 1 cut(s) 127
BsuRI GGCC 2 cut(s) 129, 649
BtgZI GCGATG 1 cut(s) 555
BtrI CACGTC 1 cut(s) 1415
BveI ACCTGC 1 cut(s) 1285
Cac8I GCNNGC 2 cut(s) 1428, 1473
CaiI CAGNNNCTG 2 cut(s) 238, 1243
CciI TCATGA 1 cut(s) 850
CfoI GCGC 4 cut(s) 664, 1428, 1430, 1468
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 3 cut(s) 268, 647, 1499
CseI GACGC 2 cut(s) 173, 456
CviAII CATG 3 cut(s) 386, 851, 1472
DdeI CTNAG 9 cut(s) 171, 219, 231, 251, 366, 471, 1154, 1332, 1476
DpnI GATC 5 cut(s) 144, 507, 753, 849, 1029
DpnII GATC 5 cut(s) 142, 505, 751, 847, 1027
EaeI YGGCCR 1 cut(s) 127
EagI CGGCCG 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 573, 615
EarI CTCTTC 2 cut(s) 573, 615
EciI GGCGGA 1 cut(s) 331
Ecl136II GAGCTC 2 cut(s) 761, 1145
EclXI CGGCCG 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 763, 1147
Eco47I GGWCC 2 cut(s) 268, 1499
Eco52I CGGCCG 1 cut(s) 127
Eco53kI GAGCTC 2 cut(s) 761, 1145
Eco88I CYCGRG 3 cut(s) 60, 272, 371
EcoICRI GAGCTC 2 cut(s) 761, 1145
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 763, 1147
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 3 cut(s) 389, 854, 1475
FalI AAGNNNNNCTT 4 cut(s) 722, 754, 926, 958
FaqI GGGAC 1 cut(s) 1097
FatI CATG 3 cut(s) 385, 850, 1471
FauNDI CATATG 1 cut(s) 400
FbaI TGATCA 1 cut(s) 847
FriOI GRGCYC 2 cut(s) 763, 1147
FspBI CTAG 1 cut(s) 1062
FspI TGCGCA 1 cut(s) 663
GlaI GCGC 4 cut(s) 663, 1427, 1429, 1467
GsuI CTGGAG 1 cut(s) 1131
HaeIII GGCC 2 cut(s) 129, 649
HapII CCGG 7 cut(s) 96, 126, 242, 330, 440, 509, 968
HgaI GACGC 2 cut(s) 173, 456
HhaI GCGC 4 cut(s) 664, 1428, 1430, 1468
Hin1I GRCGYC 2 cut(s) 390, 467
Hin1II CATG 3 cut(s) 389, 854, 1475
Hin6I GCGC 4 cut(s) 662, 1426, 1428, 1466
HinP1I GCGC 4 cut(s) 662, 1426, 1428, 1466
HindIII AAGCTT 1 cut(s) 1223
HinfI GANTC 8 cut(s) 65, 89, 149, 262, 887, 1058, 1070, 1364
HpaII CCGG 7 cut(s) 96, 126, 242, 330, 440, 509, 968
HphI GGTGA 5 cut(s) 84, 653, 746, 857, 1472
Hpy166II GTNNAC 1 cut(s) 1252
Hpy8I GTNNAC 1 cut(s) 1252
Hpy99I CGWCG 7 cut(s) 89, 143, 167, 287, 290, 768, 824
HpyAV CCTTC 8 cut(s) 176, 250, 833, 928, 1297, 1384, 1438, 1512
HpyCH4III ACNGT 6 cut(s) 107, 290, 478, 1088, 1096, 1186
HpyCH4IV ACGT 4 cut(s) 390, 912, 1414, 1513
HpyCH4V TGCA 3 cut(s) 521, 683, 779
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 376, 382, 404, 605, 1427, 1472
HpyF3I CTNAG 9 cut(s) 171, 219, 231, 251, 366, 471, 1154, 1332, 1476
HpySE526I ACGT 4 cut(s) 390, 912, 1414, 1513
Hsp92I GRCGYC 2 cut(s) 390, 467
Hsp92II CATG 3 cut(s) 389, 854, 1475
HspAI GCGC 4 cut(s) 662, 1426, 1428, 1466
Kpn2I TCCGGA 2 cut(s) 439, 508
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 142, 505, 751, 847, 1027
LmnI GCTCC 5 cut(s) 344, 442, 1142, 1150, 1320
LweI GCATC 5 cut(s) 394, 520, 532, 766, 1192
MaeI CTAG 1 cut(s) 1062
MaeII ACGT 4 cut(s) 390, 912, 1414, 1513
MaeIII GTNAC 2 cut(s) 290, 734
MalI GATC 5 cut(s) 144, 507, 753, 849, 1029
MbiI CCGCTC 1 cut(s) 1387
MboI GATC 5 cut(s) 142, 505, 751, 847, 1027
MhlI GDGCHC 2 cut(s) 763, 1147
MluCI AATT 6 cut(s) 420, 712, 782, 1047, 1213, 1439
MlyI GAGTC 3 cut(s) 59, 83, 1373
MmeI TCCRAC 3 cut(s) 96, 378, 685
MroI TCCGGA 2 cut(s) 439, 508
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 6 cut(s) 321, 492, 594, 797, 921, 951
MslI CAYNNNNRTG 1 cut(s) 855
MspA1I CMGCKG 1 cut(s) 1397
MspI CCGG 7 cut(s) 96, 126, 242, 330, 440, 509, 968
MspR9I CCNGG 3 cut(s) 96, 203, 969
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 1428
MwoI GCNNNNNNNGC 7 cut(s) 167, 376, 382, 404, 605, 1427, 1472
NciI CCSGG 2 cut(s) 96, 969
NdeI CATATG 1 cut(s) 400
NdeII GATC 5 cut(s) 142, 505, 751, 847, 1027
NlaIII CATG 3 cut(s) 389, 854, 1475
NlaIV GGNNCC 3 cut(s) 340, 438, 966
NmuCI GTSAC 1 cut(s) 734
NsbI TGCGCA 1 cut(s) 663
NspI RCATGY 1 cut(s) 1475
PaeI GCATGC 1 cut(s) 1475
PaeR7I CTCGAG 1 cut(s) 371
PagI TCATGA 1 cut(s) 850
PauI GCGCGC 1 cut(s) 1426
PcsI WCGNNNNNNNCGW 4 cut(s) 144, 183, 279, 825
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 5 cut(s) 149, 262, 887, 1058, 1070
PflFI GACNNNGTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 967
PleI GAGTC 3 cut(s) 59, 83, 1372
PpsI GAGTC 3 cut(s) 59, 83, 1372
Psp124BI GAGCTC 2 cut(s) 763, 1147
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 340, 438, 966
PspPI GGNCC 3 cut(s) 268, 647, 1499
PspXI VCTCGAGB 1 cut(s) 371
PstNI CAGNNNCTG 2 cut(s) 238, 1243
PsyI GACNNNGTC 1 cut(s) 107
PteI GCGCGC 1 cut(s) 1426
PvuII CAGCTG 1 cut(s) 1397
RseI CAYNNNNRTG 1 cut(s) 855
SacI GAGCTC 2 cut(s) 763, 1147
SaqAI TTAA 6 cut(s) 321, 492, 594, 797, 921, 951
Sau3AI GATC 5 cut(s) 142, 505, 751, 847, 1027
Sau96I GGNCC 3 cut(s) 268, 647, 1499
SchI GAGTC 3 cut(s) 59, 83, 1373
ScrFI CCNGG 3 cut(s) 96, 203, 969
SduI GDGCHC 2 cut(s) 763, 1147
SfaNI GCATC 5 cut(s) 394, 520, 532, 766, 1192
SfcI CTRYAG 1 cut(s) 1284
Sfr274I CTCGAG 1 cut(s) 371
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 2 cut(s) 268, 1499
SlaI CTCGAG 1 cut(s) 371
SmiMI CAYNNNNRTG 1 cut(s) 855
SmlI CTYRAG 3 cut(s) 371, 905, 1118
SmoI CTYRAG 3 cut(s) 371, 905, 1118
SphI GCATGC 1 cut(s) 1475
Sse9I AATT 6 cut(s) 420, 712, 782, 1047, 1213, 1439
SsiI CCGC 7 cut(s) 99, 224, 227, 333, 342, 383, 1387
SspMI CTAG 1 cut(s) 1062
SstI GAGCTC 2 cut(s) 763, 1147
StyD4I CCNGG 3 cut(s) 94, 201, 967
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 6 cut(s) 107, 290, 478, 1088, 1096, 1186
TaiI ACGT 4 cut(s) 393, 915, 1417, 1516
TaqI TCGA 1 cut(s) 372
TasI AATT 6 cut(s) 420, 712, 782, 1047, 1213, 1439
TauI GCSGC 3 cut(s) 102, 227, 230
TfiI GAWTC 5 cut(s) 149, 262, 887, 1058, 1070
Tru1I TTAA 6 cut(s) 321, 492, 594, 797, 921, 951
Tru9I TTAA 6 cut(s) 321, 492, 594, 797, 921, 951
TseFI GTSAC 1 cut(s) 734
Tsp45I GTSAC 1 cut(s) 734
TspGWI ACGGA 1 cut(s) 885
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 268, 1499
XapI RAATTY 2 cut(s) 420, 782
XceI RCATGY 1 cut(s) 1475
XhoI CTCGAG 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 1062
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.