Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008366

Physical Location & Seq

Genomic Coordinates Forward (+)

7366157 .. 7367987

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g07450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAGTTTGGTGTCGATTTTTCAGGCGTATGATGCTTCCAAGTTGCGAATTTCGGAGAATGAGGCTCCGGATGAGAAGGCTATATACACTGTGGCGTCCAAGACTGTGAATGTGAGGGTTCAGAGAGCTGTTGATCCGGAAGTGTCTACATTGCTTGATGATAGTGATGCGGCGTCGCGGTTTGGTTCTGATGATGAGGATTTGGAGGAGGATTTTGTGATTAAGGCTAACCTTCCTGATGGAGATGAAGAGGAGAAGGAGGAGGAGGAAGAGGAGGATGTTTGTGTAGGTGATGGGCCAAGTTTTGTTGAGCAGTCGGAGAGCGAGAATGTAAGCAATGAAGTTGGTGTAGTTGGAAGGAATTGCGTGGAGAGGGGAAAGACTGAGTTTTTGGTGAATCATCCACGAGCTCGGAGGGATGTGGATGATGAATTTGATATGGTTTTAAATCGGGAGTATGATAATGACGATGATGAGGATGACTATGATGGTGGTGATCATGACGATGGTTATTTTTATGGAGATGAAGAGGATAAATCCATTGAAGAGAAGCTCAAGAACGTCAAACTTAATGACTGCGTGAAGGATGACTTTGAACTTAATGAATATGAGGTGCCGGGAGATGGTGAGGAGATACAAAAAACAAAGCAGCTTGGGAAGATATATGAGAATGAAGATCAAGAGGATGAGGTGGTAATAGTAGAGGAATCTAGTGATGAATCAGAAAAGTGGGACTGTGAGACTGTTGTTACTACATATTCAACTCTCGAAAACCATCCTGCAAAAATTGGAGCTCCAGAACTAAATAGAAAGAAGAAGCAACTTTCAGAAACCGTTTTTAAAGGCTTGGATGCGTCAAATACTTTGATAAAGCTTGGAGGTAAACAGAGGCTGCCTGTGGACTTCTTGCCTGGTAATAGAAAACCTGCTGCTGCTGCTACAGAGAAGGTGGAAGATACAGGTAGCTTGAAAACTGAGCAGCAGAAAAGGAAGCAACATGGTCAGGAGTCAAAGGAGGAGAAGAAAGAGCGGAAGGCGGTTGTCAAGGAGGAAAGACGTGAAGCACGGTGTGCTAAAAAGGAATTGAAGGAACTTTACAAGGGTGAAGCGCAACATGCTCAGAGAATAGCTGCTATATCTGGCCCTTCTTCCAAGCGTCTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTV

Protein Analysis

389

Amino Acids

43.86

Weight (kDa)

4.51

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49990
fragaria_vesca	FvH4_2g39030 FvH4_2g39030 FvH4_7g07450
malus_domestica	MD08G1018100.v1.1 MD15G1017400.v1.1
prunus_persica	Prupe.1G370700_v2.0.a1
pyrus_communis	pycom08g01570 pycom15g01530
rosa_chinensis	RchiOBHm_Chr6g0302141
rosa_laevigata	RLG00000011192
rosa_multiflora	Rmu_co8261167.1_g000001 Rmu_sc0002132.1_g000026 Rmu_sc0033550.1_g000001 Rmu_ssc0000160.1_g000014
rosa_roxburghii	Rroxscaffold_7G00166050
rosa_rugosa	Rorug06G0312500
rosa_samantha	Rh6AG425000 Rh6BG168000 Rh6BG477500 Rh6CG437800 Rh6DG424900
rosa_wichuraiana	Rw6G036810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	934
AccB1I	GGYRCC	1 cut(s)	613
AccBSI	CCGCTC	1 cut(s)	1030
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	178
AccIII	TCCGGA	2 cut(s)	67, 136
AciI	CCGC	4 cut(s)	170, 178, 1030, 1037
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	2 cut(s)	48, 431
AcyI	GRCGYC	2 cut(s)	95, 173
AdeI	CACNNNGTG	1 cut(s)	1070
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	5 cut(s)	545, 596, 762, 970, 1087
AjiI	CACGTC	1 cut(s)	1058
AjnI	CCWGG	1 cut(s)	910
AluBI	AGCT	8 cut(s)	128, 410, 553, 652, 794, 874, 966, 1130
AluI	AGCT	8 cut(s)	128, 410, 553, 652, 794, 874, 966, 1130
Alw21I	GWGCWC	2 cut(s)	412, 796
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	1 cut(s)	128
AlwNI	CAGNNNCTG	1 cut(s)	892
Aor13HI	TCCGGA	2 cut(s)	67, 136
AoxI	GGCC	2 cut(s)	296, 1141
ApeKI	GCWGC	7 cut(s)	649, 892, 929, 932, 935, 979, 1130
ApoI	RAATTY	2 cut(s)	48, 431
ArsI	GACNNNNNNTTYG	2 cut(s)	373, 405
AspLEI	GCGC	1 cut(s)	1111
AspS9I	GGNCC	2 cut(s)	296, 1142
AsuC2I	CCSGG	1 cut(s)	618
AsuHPI	GGTGA	5 cut(s)	302, 406, 506, 638, 1115
BanI	GGYRCC	1 cut(s)	613
BanII	GRGCYC	2 cut(s)	412, 796
BarI	GAAGNNNNNNTAC	4 cut(s)	68, 100, 1079, 1111
BauI	CACGAG	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	412, 796
BbvI	GCAGC	7 cut(s)	661, 879, 916, 919, 922, 991, 1117
BccI	CCATC	6 cut(s)	233, 287, 482, 500, 617, 783
BciT130I	CCWGG	1 cut(s)	912
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	618
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	939
BfuAI	ACCTGC	1 cut(s)	934
BisI	GCNGC	8 cut(s)	171, 650, 893, 930, 933, 936, 980, 1131
BlsI	GCNGC	8 cut(s)	172, 651, 894, 931, 934, 937, 981, 1132
Bme1390I	CCNGG	2 cut(s)	618, 912
BmgBI	CACGTC	1 cut(s)	1058
BmgT120I	GGNCC	2 cut(s)	296, 1142
BmiI	GGNNCC	2 cut(s)	66, 615
BmrFI	CCNGG	2 cut(s)	618, 912
BmsI	GCATC	3 cut(s)	22, 157, 841
BpmI	CTGGAG	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	618
BsaHI	GRCGYC	2 cut(s)	95, 173
BsaWI	WCCGGW	2 cut(s)	67, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse3DI	GCAATG	2 cut(s)	149, 343
BseAI	TCCGGA	2 cut(s)	67, 136
BseBI	CCWGG	1 cut(s)	912
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	2 cut(s)	149, 343
BseMII	CTCAG	3 cut(s)	375, 966, 1133
BseRI	GAGGAG	7 cut(s)	221, 266, 275, 278, 287, 644, 1031
BseXI	GCAGC	7 cut(s)	661, 879, 916, 919, 922, 991, 1117
Bsh1236I	CGCG	1 cut(s)	178
BshFI	GGCC	2 cut(s)	298, 1143
BshNI	GGYRCC	1 cut(s)	613
BsiHKAI	GWGCWC	2 cut(s)	412, 796
BsiSI	CCGG	3 cut(s)	68, 137, 617
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	2 cut(s)	298, 1143
Bsp1286I	GDGCHC	2 cut(s)	412, 796
Bsp13I	TCCGGA	2 cut(s)	67, 136
Bsp143I	GATC	3 cut(s)	133, 496, 676
BspACI	CCGC	4 cut(s)	170, 178, 1030, 1037
BspANI	GGCC	2 cut(s)	298, 1143
BspCNI	CTCAG	3 cut(s)	376, 967, 1132
BspEI	TCCGGA	2 cut(s)	67, 136
BspFNI	CGCG	1 cut(s)	178
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	66, 615
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	613
BsrBI	CCGCTC	1 cut(s)	1030
BsrDI	GCAATG	2 cut(s)	149, 343
BssMI	GATC	3 cut(s)	133, 496, 676
BssNI	GRCGYC	2 cut(s)	95, 173
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	912
Bst4CI	ACNGT	6 cut(s)	91, 106, 737, 745, 835, 1068
Bst6I	CTCTTC	4 cut(s)	243, 264, 522, 540
BstACI	GRCGYC	2 cut(s)	95, 173
BstAPI	GCANNNNNTGC	1 cut(s)	1070
BstDEI	CTNAG	3 cut(s)	384, 975, 1119
BstFNI	CGCG	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	1111
BstKTI	GATC	3 cut(s)	136, 499, 679
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	3 cut(s)	133, 496, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 935, 1070, 1115
BstNI	CCWGG	1 cut(s)	912
BstNSI	RCATGY	1 cut(s)	1118
BstSCI	CCNGG	2 cut(s)	616, 910
BstSFI	CTRYAG	1 cut(s)	939
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	7 cut(s)	661, 879, 916, 919, 922, 991, 1117
BsuRI	GGCC	2 cut(s)	298, 1143
BtrI	CACGTC	1 cut(s)	1058
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	934
CaiI	CAGNNNCTG	1 cut(s)	892
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	1 cut(s)	1111
Cfr13I	GGNCC	2 cut(s)	296, 1142
CseI	GACGC	4 cut(s)	84, 162, 843, 1145
CviAII	CATG	3 cut(s)	500, 998, 1115
DdeI	CTNAG	3 cut(s)	384, 975, 1119
DpnI	GATC	3 cut(s)	135, 498, 678
DpnII	GATC	3 cut(s)	133, 496, 676
DraI	TTTAAA	2 cut(s)	447, 841
DraIII	CACNNNGTG	1 cut(s)	1070
Eam1104I	CTCTTC	4 cut(s)	243, 264, 522, 540
EarI	CTCTTC	4 cut(s)	243, 264, 522, 540
Ecl136II	GAGCTC	2 cut(s)	410, 794
Eco24I	GRGCYC	2 cut(s)	412, 796
Eco53kI	GAGCTC	2 cut(s)	410, 794
EcoICRI	GAGCTC	2 cut(s)	410, 794
EcoRII	CCWGG	1 cut(s)	910
EcoT38I	GRGCYC	2 cut(s)	412, 796
FaeI	CATG	3 cut(s)	503, 1001, 1118
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	3 cut(s)	499, 997, 1114
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	8 cut(s)	171, 650, 893, 930, 933, 936, 980, 1131
FriOI	GRGCYC	2 cut(s)	412, 796
Fsp4HI	GCNGC	8 cut(s)	171, 650, 893, 930, 933, 936, 980, 1131
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	1 cut(s)	1110
GluI	GCNGC	8 cut(s)	171, 650, 893, 930, 933, 936, 980, 1131
GsuI	CTGGAG	1 cut(s)	780
HaeIII	GGCC	2 cut(s)	298, 1143
HapII	CCGG	3 cut(s)	68, 137, 617
HgaI	GACGC	4 cut(s)	84, 162, 843, 1145
HhaI	GCGC	1 cut(s)	1111
Hin1I	GRCGYC	2 cut(s)	95, 173
Hin1II	CATG	3 cut(s)	503, 1001, 1118
Hin6I	GCGC	1 cut(s)	1109
HinP1I	GCGC	1 cut(s)	1109
HindIII	AAGCTT	1 cut(s)	872
HinfI	GANTC	4 cut(s)	397, 707, 719, 1007
HpaII	CCGG	3 cut(s)	68, 137, 617
HphI	GGTGA	5 cut(s)	302, 406, 506, 638, 1115
Hpy166II	GTNNAC	3 cut(s)	147, 884, 901
Hpy188I	TCNGA	9 cut(s)	55, 123, 190, 319, 414, 724, 829, 1122, 1161
Hpy8I	GTNNAC	3 cut(s)	147, 884, 901
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	9 cut(s)	70, 242, 250, 351, 577, 940, 1027, 1081, 1155
HpyCH4III	ACNGT	6 cut(s)	91, 106, 737, 745, 835, 1068
HpyCH4IV	ACGT	2 cut(s)	561, 1057
HpyCH4V	TGCA	1 cut(s)	782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 935, 1070, 1115
HpyF3I	CTNAG	3 cut(s)	384, 975, 1119
HpySE526I	ACGT	2 cut(s)	561, 1057
Hsp92I	GRCGYC	2 cut(s)	95, 173
Hsp92II	CATG	3 cut(s)	503, 1001, 1118
HspAI	GCGC	1 cut(s)	1109
Kpn2I	TCCGGA	2 cut(s)	67, 136
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	133, 496, 676
LmnI	GCTCC	3 cut(s)	70, 791, 799
Lsp1109I	GCAGC	7 cut(s)	661, 879, 916, 919, 922, 991, 1117
LweI	GCATC	3 cut(s)	22, 157, 841
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	2 cut(s)	561, 1057
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	3 cut(s)	135, 498, 678
MbiI	CCGCTC	1 cut(s)	1030
MboI	GATC	3 cut(s)	133, 496, 676
MhlI	GDGCHC	2 cut(s)	412, 796
MluCI	AATT	5 cut(s)	48, 361, 431, 786, 1082
MlyI	GAGTC	1 cut(s)	1016
MmeI	TCCRAC	2 cut(s)	297, 334
MroI	TCCGGA	2 cut(s)	67, 136
MseI	TTAA	5 cut(s)	222, 446, 570, 600, 840
MslI	CAYNNNNRTG	1 cut(s)	504
MspI	CCGG	3 cut(s)	68, 137, 617
MspR9I	CCNGG	2 cut(s)	618, 912
MvaI	CCWGG	1 cut(s)	912
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	4 cut(s)	32, 935, 1070, 1115
NciI	CCSGG	1 cut(s)	618
NdeII	GATC	3 cut(s)	133, 496, 676
NlaIII	CATG	3 cut(s)	503, 1001, 1118
NlaIV	GGNNCC	2 cut(s)	66, 615
NspI	RCATGY	1 cut(s)	1118
PagI	TCATGA	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	397, 707, 719
PkrI	GCNGC	8 cut(s)	172, 651, 894, 931, 934, 937, 981, 1132
PleI	GAGTC	1 cut(s)	1015
PpsI	GAGTC	1 cut(s)	1015
Psp124BI	GAGCTC	2 cut(s)	412, 796
Psp6I	CCWGG	1 cut(s)	910
PspGI	CCWGG	1 cut(s)	910
PspN4I	GGNNCC	2 cut(s)	66, 615
PspPI	GGNCC	2 cut(s)	296, 1142
PstNI	CAGNNNCTG	1 cut(s)	892
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	2 cut(s)	412, 796
SaqAI	TTAA	5 cut(s)	222, 446, 570, 600, 840
SatI	GCNGC	8 cut(s)	171, 650, 893, 930, 933, 936, 980, 1131
Sau3AI	GATC	3 cut(s)	133, 496, 676
Sau96I	GGNCC	2 cut(s)	296, 1142
SchI	GAGTC	1 cut(s)	1016
ScrFI	CCNGG	2 cut(s)	618, 912
SduI	GDGCHC	2 cut(s)	412, 796
SfaNI	GCATC	3 cut(s)	22, 157, 841
SfcI	CTRYAG	1 cut(s)	939
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	5 cut(s)	48, 361, 431, 786, 1082
SsiI	CCGC	4 cut(s)	170, 178, 1030, 1037
SspMI	CTAG	1 cut(s)	711
SstI	GAGCTC	2 cut(s)	412, 796
StyD4I	CCNGG	2 cut(s)	616, 910
TaaI	ACNGT	6 cut(s)	91, 106, 737, 745, 835, 1068
TaiI	ACGT	2 cut(s)	564, 1060
TaqI	TCGA	2 cut(s)	14, 768
TasI	AATT	5 cut(s)	48, 361, 431, 786, 1082
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	397, 707, 719
Tru1I	TTAA	5 cut(s)	222, 446, 570, 600, 840
Tru9I	TTAA	5 cut(s)	222, 446, 570, 600, 840
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	7 cut(s)	649, 892, 929, 932, 935, 979, 1130
TspDTI	ATGAA	7 cut(s)	261, 354, 444, 540, 618, 687, 732
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	2 cut(s)	48, 431
XceI	RCATGY	1 cut(s)	1118
XmiI	GTMKAC	1 cut(s)	146
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.