RLG00000011192

Protein LTV1 homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
7495635 .. 7498512
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011192

Sequence Viewer

Length: 1530 bp
ATGGGGAGAAAGAAGAAGTTCATTGACAAGAAAAAGTCGTCCACTTTCCAATTAGTGGCCCGAGACTCCTCCGACCCCAACTACGATGACTCACCAGGCGGCGACCGTGTCTTCATTCAAGTCTCCGGCCGACCCAACGACGATCCCGATTCTATCTTCGCCGACGCGCCTGAGGACGAAGAAGGTGACCACTATTACGACCAGGCTTTCGGAAACTCTGAGGCGGCGACTCAGCCCCTGCCGGAGAAACTGAGGAAGGAGATTCTGGACCTCGGGTTTCCCGACGACGGTTACAACTATTTGAACCATTTGAGGGAGATTAAGAACACCGGCGGTGGCTCCTCCTATTACTCCAACCCCAAGGCTAAGCTCGAGCAGCTTCCGCATGACGTCAAGGCATACGATGCTTCAAGATTGCGAATTTCGGAGAATGAAGCTCCGGATGAGAATGCTATTTACAATGTGGCGTCTAAGACGGTCAATGTGAGGGTTAAGAAAGCTGTTGATCCGGAAGTGTCTGCATTGCTTGATGCTGGTAGTGATGCTTCGCGGTTCGGTTCTGATGATGAGGATTTGGAAGAGGATTTTGTGGTTAAGGCTAACTTTGCTGATGGAGATGAAGAGGAGGATGTGTGTATAGGTGATAGGCCAAGTTTTGTTGAGCAATCGGAGAACAACAATGCAAGGAATGAATTTGGTGTGGTTGGAAGAAATTGCGTGGAGAGAGGGAAGAGTGACATTGTGGTGGATGATCCACGAGCTCGTCGGGATGTGGATGAAGAATTTGATATGGTTTTAAGTCGGGAATATGACAATGACAATGATGACCATGATGATGACTATGAAGGTGGTGATCATGACGATGATTATTTTTATGGAGATGAAGTGGATGAATCCATTGAGGAGAAGCTCAAGAACGTCAAACTTAATGACTGCGTGAAGGATGACTTTGAGCTTAATGAATATGAGGTTCCTGGAGATGATGAGGAGAAACAGAAAACGAAGCAGCTTGGGAAGATATATGAGGATGAAGATCAAGAGGACAAGGTGGTTATTGTAGAGGAATCTAGTGATGAATCAGAAAAATGGGACTGTGAGACTGTTATTACTACATATTCAAATCTTGAGAACCATCCTGCAAAAATCGGAGCTCCAGAGCTAAGTAGAAAGAAGAAGCAGCTTTCAGAAACCGTTTTTGGAGGCTTGGATGCCTCCAATAATTTGATAAAGCTTGGAGGAAGACAGAGGCTGCCTGTGGACTTCTTACCTCGTAATAGAAGACCTGCTGCTACAGAGAGGGCGACAGAGAAGGTGGAAGATATAGTTAGCTTGAAAACTGAGCAGCAGAAAAGGAAGCAACATGGTCAGGAGTCAAAGGAGGAGAAGAAAGAGCGGAAGGCGGCTGTCAAGGAGGAAAGACGTGAGGCACGGCGCACAAAAAAGGAATTGAAGGAACTTTACAAGGGTGAAGCGCAGCATGCTCAGAGAGTAGCTGCTATATCTGGTCCTTCTTCCAAACATCTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

57.71

Weight (kDa)

4.66

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 1 cut(s) 1291
AccB7I CCANNNNNTGG 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 1393
AccII CGCG 2 cut(s) 167, 550
AccIII TCCGGA 2 cut(s) 439, 508
AciI CCGC 7 cut(s) 99, 224, 333, 383, 550, 1393, 1400
AclWI GGATC 3 cut(s) 137, 500, 746
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 3 cut(s) 420, 692, 782
AcyI GRCGYC 2 cut(s) 390, 467
AfiI CCNNNNNNNGG 3 cut(s) 55, 287, 313
AgsI TTSAA 6 cut(s) 119, 304, 411, 1119, 1333, 1450
AjiI CACGTC 1 cut(s) 1421
AjnI CCWGG 3 cut(s) 94, 201, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 1179, 1211
Alw21I GWGCWC 2 cut(s) 763, 1153
Alw26I GTCTC 3 cut(s) 57, 127, 1091
AlwI GGATC 3 cut(s) 137, 500, 746
AlwNI CAGNNNCTG 2 cut(s) 238, 1249
Ama87I CYCGRG 3 cut(s) 60, 272, 371
Aor13HI TCCGGA 2 cut(s) 439, 508
AoxI GGCC 3 cut(s) 57, 127, 647
ApeKI GCWGC 8 cut(s) 376, 1006, 1177, 1249, 1286, 1342, 1474, 1493
ApoI RAATTY 3 cut(s) 420, 692, 782
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 3 cut(s) 169, 1434, 1474
AspS9I GGNCC 3 cut(s) 58, 268, 1505
AsuHPI GGTGA 5 cut(s) 84, 197, 653, 863, 1478
AvaI CYCGRG 3 cut(s) 60, 272, 371
AvaII GGWCC 2 cut(s) 268, 1505
AxyI CCTNAGG 1 cut(s) 171
BanII GRGCYC 2 cut(s) 763, 1153
BarI GAAGNNNNNNTAC 4 cut(s) 529, 561, 1442, 1474
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 3 cut(s) 103, 1246, 1285
Bbv12I GWGCWC 2 cut(s) 763, 1153
BbvI GCAGC 8 cut(s) 388, 1018, 1189, 1236, 1273, 1354, 1480, 1486
BccI CCATC 2 cut(s) 605, 1140
BceAI ACGGC 1 cut(s) 1445
BciT130I CCWGG 3 cut(s) 96, 203, 975
BclI TGATCA 1 cut(s) 853
BcoDI GTCTC 3 cut(s) 57, 127, 1091
BfaI CTAG 1 cut(s) 1068
BfmI CTRYAG 1 cut(s) 1290
BfuAI ACCTGC 1 cut(s) 1291
BlpI GCTNAGC 1 cut(s) 366
Bme1390I CCNGG 3 cut(s) 96, 203, 975
Bme18I GGWCC 2 cut(s) 268, 1505
BmeT110I CYCGRG 3 cut(s) 60, 272, 371
BmgBI CACGTC 1 cut(s) 1421
BmgT120I GGNCC 3 cut(s) 58, 268, 1505
BmiI GGNNCC 2 cut(s) 340, 972
BmrFI CCNGG 3 cut(s) 96, 203, 975
BmsI GCATC 4 cut(s) 394, 520, 532, 1198
BpiI GAAGAC 3 cut(s) 103, 1246, 1285
BpmI CTGGAG 2 cut(s) 996, 1137
Bpu1102I GCTNAGC 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 896, 1145
BsaBI GATNNNNATC 1 cut(s) 1032
BsaHI GRCGYC 2 cut(s) 390, 467
BsaJI CCNNGG 2 cut(s) 271, 360
BsaWI WCCGGW 2 cut(s) 439, 508
BsaXI ACNNNNNCTCC 4 cut(s) 617, 647, 870, 900
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 287, 313
Bse118I RCCGGY 1 cut(s) 329
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 521
Bse8I GATNNNNATC 1 cut(s) 1032
BseAI TCCGGA 2 cut(s) 439, 508
BseBI CCWGG 3 cut(s) 96, 203, 975
BseDI CCNNGG 2 cut(s) 271, 360
BseJI GATNNNNATC 1 cut(s) 1032
BseLI CCNNNNNNNGG 3 cut(s) 55, 287, 313
BseMI GCAATG 1 cut(s) 521
BseMII CTCAG 6 cut(s) 162, 210, 242, 245, 1329, 1496
BseRI GAGGAG 6 cut(s) 58, 331, 638, 917, 1001, 1394
BseX3I CGGCCG 1 cut(s) 127
BseXI GCAGC 8 cut(s) 388, 1018, 1189, 1236, 1273, 1354, 1480, 1486
Bsh1236I CGCG 2 cut(s) 167, 550
Bsh1285I CGRYCG 2 cut(s) 106, 130
BshFI GGCC 3 cut(s) 59, 129, 649
BsiEI CGRYCG 2 cut(s) 106, 130
BsiHKAI GWGCWC 2 cut(s) 763, 1153
BsiHKCI CYCGRG 3 cut(s) 60, 272, 371
BsiSI CCGG 5 cut(s) 126, 242, 330, 440, 509
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 3 cut(s) 55, 287, 313
BsmAI GTCTC 3 cut(s) 57, 127, 1091
BsmFI GGGAC 1 cut(s) 1103
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 3 cut(s) 59, 129, 649
BsoBI CYCGRG 3 cut(s) 60, 272, 371
Bsp1286I GDGCHC 2 cut(s) 763, 1153
Bsp13I TCCGGA 2 cut(s) 439, 508
Bsp143I GATC 5 cut(s) 142, 505, 751, 853, 1033
Bsp1720I GCTNAGC 1 cut(s) 366
BspACI CCGC 7 cut(s) 99, 224, 333, 383, 550, 1393, 1400
BspANI GGCC 3 cut(s) 59, 129, 649
BspCNI CTCAG 6 cut(s) 163, 211, 243, 244, 1330, 1495
BspEI TCCGGA 2 cut(s) 439, 508
BspFNI CGCG 2 cut(s) 167, 550
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 2 cut(s) 340, 972
BspMI ACCTGC 1 cut(s) 1291
BspPI GGATC 3 cut(s) 137, 500, 746
BsrBI CCGCTC 1 cut(s) 1393
BsrDI GCAATG 1 cut(s) 521
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 271, 360
BssMI GATC 5 cut(s) 142, 505, 751, 853, 1033
BssNI GRCGYC 2 cut(s) 390, 467
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 360
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 3 cut(s) 96, 203, 975
Bst4CI ACNGT 6 cut(s) 107, 290, 478, 1094, 1102, 1192
Bst6I CTCTTC 3 cut(s) 573, 615, 725
BstACI GRCGYC 2 cut(s) 390, 467
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 1479
BstDEI CTNAG 9 cut(s) 171, 219, 231, 251, 366, 471, 1160, 1338, 1482
BstEII GGTNACC 1 cut(s) 185
BstFNI CGCG 2 cut(s) 167, 550
BstHHI GCGC 3 cut(s) 169, 1434, 1474
BstKTI GATC 5 cut(s) 145, 508, 754, 856, 1036
BstMAI GTCTC 3 cut(s) 57, 127, 1091
BstMBI GATC 5 cut(s) 142, 505, 751, 853, 1033
BstMCI CGRYCG 2 cut(s) 106, 130
BstMWI GCNNNNNNNGC 5 cut(s) 376, 382, 404, 605, 1478
BstNI CCWGG 3 cut(s) 96, 203, 975
BstNSI RCATGY 1 cut(s) 1481
BstPI GGTNACC 1 cut(s) 185
BstSCI CCNGG 3 cut(s) 94, 201, 973
BstSFI CTRYAG 1 cut(s) 1290
BstUI CGCG 2 cut(s) 167, 550
BstV1I GCAGC 8 cut(s) 388, 1018, 1189, 1236, 1273, 1354, 1480, 1486
BstV2I GAAGAC 3 cut(s) 103, 1246, 1285
BstZI CGGCCG 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 59, 129, 649
BtrI CACGTC 1 cut(s) 1421
BveI ACCTGC 1 cut(s) 1291
Cac8I GCNNGC 1 cut(s) 1479
CaiI CAGNNNCTG 2 cut(s) 238, 1249
CciI TCATGA 1 cut(s) 856
CfoI GCGC 3 cut(s) 169, 1434, 1474
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 3 cut(s) 58, 268, 1505
CseI GACGC 2 cut(s) 173, 456
CviAII CATG 5 cut(s) 386, 830, 857, 1361, 1478
DdeI CTNAG 9 cut(s) 171, 219, 231, 251, 366, 471, 1160, 1338, 1482
DpnI GATC 5 cut(s) 144, 507, 753, 855, 1035
DpnII GATC 5 cut(s) 142, 505, 751, 853, 1033
EaeI YGGCCR 1 cut(s) 127
EagI CGGCCG 1 cut(s) 127
Eam1104I CTCTTC 3 cut(s) 573, 615, 725
EarI CTCTTC 3 cut(s) 573, 615, 725
Ecl136II GAGCTC 2 cut(s) 761, 1151
EclXI CGGCCG 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 360
Eco24I GRGCYC 2 cut(s) 763, 1153
Eco47I GGWCC 2 cut(s) 268, 1505
Eco52I CGGCCG 1 cut(s) 127
Eco53kI GAGCTC 2 cut(s) 761, 1151
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 3 cut(s) 60, 272, 371
Eco91I GGTNACC 1 cut(s) 185
EcoICRI GAGCTC 2 cut(s) 761, 1151
EcoO65I GGTNACC 1 cut(s) 185
EcoRII CCWGG 3 cut(s) 94, 201, 973
EcoT14I CCWWGG 1 cut(s) 360
EcoT38I GRGCYC 2 cut(s) 763, 1153
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 5 cut(s) 389, 833, 860, 1364, 1481
FalI AAGNNNNNCTT 4 cut(s) 587, 619, 932, 964
FaqI GGGAC 1 cut(s) 1103
FatI CATG 5 cut(s) 385, 829, 856, 1360, 1477
FbaI TGATCA 1 cut(s) 853
FriOI GRGCYC 2 cut(s) 763, 1153
FspBI CTAG 1 cut(s) 1068
GlaI GCGC 3 cut(s) 168, 1433, 1473
GsuI CTGGAG 2 cut(s) 996, 1137
HaeIII GGCC 3 cut(s) 59, 129, 649
HapII CCGG 5 cut(s) 126, 242, 330, 440, 509
HgaI GACGC 2 cut(s) 173, 456
HhaI GCGC 3 cut(s) 169, 1434, 1474
Hin1I GRCGYC 2 cut(s) 390, 467
Hin1II CATG 5 cut(s) 389, 833, 860, 1364, 1481
Hin6I GCGC 3 cut(s) 167, 1432, 1472
HinP1I GCGC 3 cut(s) 167, 1432, 1472
HindIII AAGCTT 1 cut(s) 1229
HinfI GANTC 9 cut(s) 65, 89, 149, 229, 262, 893, 1064, 1076, 1370
HpaII CCGG 5 cut(s) 126, 242, 330, 440, 509
HphI GGTGA 5 cut(s) 84, 197, 653, 863, 1478
Hpy166II GTNNAC 2 cut(s) 42, 1258
Hpy8I GTNNAC 2 cut(s) 42, 1258
Hpy99I CGWCG 5 cut(s) 143, 167, 287, 290, 768
HpyAV CCTTC 8 cut(s) 176, 250, 839, 934, 1303, 1390, 1444, 1518
HpyCH4III ACNGT 6 cut(s) 107, 290, 478, 1094, 1102, 1192
HpyCH4IV ACGT 3 cut(s) 390, 918, 1420
HpyCH4V TGCA 3 cut(s) 521, 683, 1139
HpyF10VI GCNNNNNNNGC 5 cut(s) 376, 382, 404, 605, 1478
HpyF3I CTNAG 9 cut(s) 171, 219, 231, 251, 366, 471, 1160, 1338, 1482
HpySE526I ACGT 3 cut(s) 390, 918, 1420
Hsp92I GRCGYC 2 cut(s) 390, 467
Hsp92II CATG 5 cut(s) 389, 833, 860, 1364, 1481
HspAI GCGC 3 cut(s) 167, 1432, 1472
Kpn2I TCCGGA 2 cut(s) 439, 508
Ksp22I TGATCA 1 cut(s) 853
Kzo9I GATC 5 cut(s) 142, 505, 751, 853, 1033
LmnI GCTCC 4 cut(s) 344, 442, 1148, 1156
Lsp1109I GCAGC 8 cut(s) 388, 1018, 1189, 1236, 1273, 1354, 1480, 1486
LweI GCATC 4 cut(s) 394, 520, 532, 1198
MaeI CTAG 1 cut(s) 1068
MaeII ACGT 3 cut(s) 390, 918, 1420
MaeIII GTNAC 3 cut(s) 185, 290, 734
MalI GATC 5 cut(s) 144, 507, 753, 855, 1035
MbiI CCGCTC 1 cut(s) 1393
MboI GATC 5 cut(s) 142, 505, 751, 853, 1033
MhlI GDGCHC 2 cut(s) 763, 1153
MluCI AATT 7 cut(s) 50, 420, 692, 712, 782, 1219, 1445
MlyI GAGTC 4 cut(s) 59, 83, 223, 1379
MmeI TCCRAC 3 cut(s) 96, 378, 685
MroI TCCGGA 2 cut(s) 439, 508
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 6 cut(s) 321, 492, 594, 797, 927, 957
MslI CAYNNNNRTG 3 cut(s) 743, 834, 861
MspI CCGG 5 cut(s) 126, 242, 330, 440, 509
MspR9I CCNGG 3 cut(s) 96, 203, 975
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 3 cut(s) 96, 203, 975
MvnI CGCG 2 cut(s) 167, 550
MwoI GCNNNNNNNGC 5 cut(s) 376, 382, 404, 605, 1478
NdeII GATC 5 cut(s) 142, 505, 751, 853, 1033
NlaIII CATG 5 cut(s) 389, 833, 860, 1364, 1481
NlaIV GGNNCC 2 cut(s) 340, 972
NmuCI GTSAC 2 cut(s) 185, 734
NspI RCATGY 1 cut(s) 1481
PaeI GCATGC 1 cut(s) 1481
PaeR7I CTCGAG 1 cut(s) 371
PagI TCATGA 1 cut(s) 856
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 279
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 5 cut(s) 149, 262, 893, 1064, 1076
PflFI GACNNNGTC 1 cut(s) 107
PflMI CCANNNNNTGG 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 973
PleI GAGTC 4 cut(s) 59, 83, 223, 1378
PpsI GAGTC 4 cut(s) 59, 83, 223, 1378
Psp124BI GAGCTC 2 cut(s) 763, 1153
Psp6I CCWGG 3 cut(s) 94, 201, 973
PspEI GGTNACC 1 cut(s) 185
PspGI CCWGG 3 cut(s) 94, 201, 973
PspN4I GGNNCC 2 cut(s) 340, 972
PspPI GGNCC 3 cut(s) 58, 268, 1505
PspXI VCTCGAGB 1 cut(s) 371
PstNI CAGNNNCTG 2 cut(s) 238, 1249
PsyI GACNNNGTC 1 cut(s) 107
RseI CAYNNNNRTG 3 cut(s) 743, 834, 861
SacI GAGCTC 2 cut(s) 763, 1153
SaqAI TTAA 6 cut(s) 321, 492, 594, 797, 927, 957
Sau3AI GATC 5 cut(s) 142, 505, 751, 853, 1033
Sau96I GGNCC 3 cut(s) 58, 268, 1505
SchI GAGTC 4 cut(s) 59, 83, 223, 1379
ScrFI CCNGG 3 cut(s) 96, 203, 975
SduI GDGCHC 2 cut(s) 763, 1153
SfaNI GCATC 4 cut(s) 394, 520, 532, 1198
SfcI CTRYAG 1 cut(s) 1290
Sfr274I CTCGAG 1 cut(s) 371
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 2 cut(s) 268, 1505
SlaI CTCGAG 1 cut(s) 371
SmiMI CAYNNNNRTG 3 cut(s) 743, 834, 861
SmlI CTYRAG 3 cut(s) 371, 911, 1124
SmoI CTYRAG 3 cut(s) 371, 911, 1124
SphI GCATGC 1 cut(s) 1481
Sse9I AATT 7 cut(s) 50, 420, 692, 712, 782, 1219, 1445
SsiI CCGC 7 cut(s) 99, 224, 333, 383, 550, 1393, 1400
SspMI CTAG 1 cut(s) 1068
SstI GAGCTC 2 cut(s) 763, 1153
StyD4I CCNGG 3 cut(s) 94, 201, 973
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 6 cut(s) 107, 290, 478, 1094, 1102, 1192
TaiI ACGT 3 cut(s) 393, 921, 1423
TaqI TCGA 1 cut(s) 372
TasI AATT 7 cut(s) 50, 420, 692, 712, 782, 1219, 1445
TauI GCSGC 3 cut(s) 102, 227, 1403
TfiI GAWTC 5 cut(s) 149, 262, 893, 1064, 1076
Tru1I TTAA 6 cut(s) 321, 492, 594, 797, 927, 957
Tru9I TTAA 6 cut(s) 321, 492, 594, 797, 927, 957
TseFI GTSAC 2 cut(s) 185, 734
TseI GCWGC 8 cut(s) 376, 1006, 1177, 1249, 1286, 1342, 1474, 1493
Tsp45I GTSAC 2 cut(s) 185, 734
Tth111I GACNNNGTC 1 cut(s) 107
Van91I CCANNNNNTGG 1 cut(s) 55
VpaK11BI GGWCC 2 cut(s) 268, 1505
XapI RAATTY 3 cut(s) 420, 692, 782
XceI RCATGY 1 cut(s) 1481
XhoI CTCGAG 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 1 cut(s) 1068
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.