AT3G50810

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015024
Physical Location & Seq
Reverse (-)
18888821 .. 18890263
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50810.3

Sequence Viewer

Length: 465 bp
ATGGAGCATGTGCCGGGATCGTTCGGCACTAGCGCCAGCTTCGCTCTCCGTTTCGGCCAAACCATTTTCTCAGCTGCTTCGTTGATCTTCATGTGCTTTGATTTCGATTTCTATGATTTCACTACTTTCTGCTATTTAGCGATGGTGATGGCAATTGTAACTCCATGGAGCATTTTACTTGCCTTGACAGACACATACTCTGTCTTAGTGAAACTCCTTCCTCAAGAATTAAGAGTTCTTTCCATCGTTTTCGCCGGTGATTTCGTACTTTCGTTTCTTTCTCTTGGTGGTGCTTGTGCTGTAGCTAGTGCAACTGAACTGCTTGCGTCTGCTGATGGAAAGATCTGTGATGGTAGCCTCTGTATCCAATACCAAGTCTCGGCTGCATTGGCTTTCTTGTGTTGGTTTCTGTTACTTGCTTCAGCTCTTTTCAATTTTTGGAGTTTACCTTCTTTATACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

154

Amino Acids

16.82

Weight (kDa)

4.2

Isoelectric Point (pI)

25.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 9 - 137 3.3e-21 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50810 AT3G50810 AT3G50810 AT4G37235
fragaria_vesca FvH4_1g14420
malus_domestica MD02G1157700.v1.1 MD15G1272400.v1.1
prunus_persica Prupe.7G146000_v2.0.a1
pyrus_communis pycom15g23600
rosa_chinensis RchiOBHm_Chr2g0103141
rosa_roxburghii Rroxscaffold_2G00139890
rosa_rugosa Rorug02G0112100
rosa_samantha Rh2BG167600 Rh2CG167900 Rh2DG166500
rosa_wichuraiana Rw2G012610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 25
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 1 cut(s) 379
AgsI TTSAA 1 cut(s) 433
AluBI AGCT 4 cut(s) 39, 74, 305, 425
AluI AGCT 4 cut(s) 39, 74, 305, 425
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 25
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 74, 383
AspLEI GCGC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 157, 269
BbvI GCAGC 2 cut(s) 61, 370
BccI CCATC 5 cut(s) 136, 142, 251, 329, 344
BciVI GTATCC 1 cut(s) 374
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 2 cut(s) 30, 306
BfmI CTRYAG 1 cut(s) 300
BfoI RGCGCY 1 cut(s) 36
BfuI GTATCC 1 cut(s) 374
BglII AGATCT 1 cut(s) 342
BisI GCNGC 2 cut(s) 75, 384
BlsI GCNGC 2 cut(s) 76, 385
Bme1390I CCNGG 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 84
BseXI GCAGC 2 cut(s) 61, 370
BshFI GGCC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 14, 255
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 382
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 3 cut(s) 17, 84, 342
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 83
BspPI GGATC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 3 cut(s) 17, 84, 342
BssT1I CCWWGG 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 37, 324
BstDEI CTNAG 2 cut(s) 70, 205
BstDSI CCRYGG 1 cut(s) 164
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 3 cut(s) 20, 87, 345
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 3 cut(s) 17, 84, 342
BstMWI GCNNNNNNNGC 2 cut(s) 41, 389
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 61, 370
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
BsuI GTATCC 1 cut(s) 374
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 164
BtgZI GCGATG 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 37, 324
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 254
CseI GACGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 266
CviAII CATG 3 cut(s) 8, 91, 165
CviJI RGCY 8 cut(s) 39, 57, 74, 305, 357, 383, 392, 425
CviKI_1 RGCY 8 cut(s) 39, 57, 74, 305, 357, 383, 392, 425
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 2 cut(s) 70, 205
DpnI GATC 3 cut(s) 19, 86, 344
DpnII GATC 3 cut(s) 17, 84, 342
EaeI YGGCCR 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 405
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 3 cut(s) 11, 94, 168
FaiI YATR 6 cut(s) 9, 92, 114, 166, 196, 457
FatI CATG 3 cut(s) 7, 90, 164
Fnu4HI GCNGC 2 cut(s) 75, 384
Fsp4HI GCNGC 2 cut(s) 75, 384
FspBI CTAG 2 cut(s) 30, 306
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 75, 384
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 1 cut(s) 57
HapII CCGG 2 cut(s) 14, 255
HgaI GACGC 1 cut(s) 315
HhaI GCGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 11, 94, 168
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HpaII CCGG 2 cut(s) 14, 255
HphI GGTGA 2 cut(s) 157, 269
Hpy166II GTNNAC 1 cut(s) 446
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 2 cut(s) 227, 459
HpyCH4V TGCA 2 cut(s) 311, 386
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 389
HpyF3I CTNAG 2 cut(s) 70, 205
Hsp92II CATG 3 cut(s) 11, 94, 168
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 3 cut(s) 17, 84, 342
LmnI GCTCC 2 cut(s) 4, 168
LpnPI CCDG 3 cut(s) 27, 49, 268
Lsp1109I GCAGC 2 cut(s) 61, 370
MaeI CTAG 2 cut(s) 30, 306
MaeIII GTNAC 2 cut(s) 157, 411
MalI GATC 3 cut(s) 19, 86, 344
MboI GATC 3 cut(s) 17, 84, 342
MboII GAAGA 1 cut(s) 79
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 342
MluCI AATT 3 cut(s) 153, 227, 433
MnlI CCTC 2 cut(s) 231, 368
MseI TTAA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 2 cut(s) 14, 255
MspR9I CCNGG 1 cut(s) 15
MunI CAATTG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 41, 389
NciI CCSGG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 164
NdeII GATC 3 cut(s) 17, 84, 342
NlaIII CATG 3 cut(s) 11, 94, 168
NmeAIII GCCGAG 1 cut(s) 359
NspI RCATGY 1 cut(s) 11
PkrI GCNGC 2 cut(s) 76, 385
PsuI RGATCY 1 cut(s) 342
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 2 cut(s) 75, 384
Sau3AI GATC 3 cut(s) 17, 84, 342
ScrFI CCNGG 1 cut(s) 15
SetI ASST 5 cut(s) 41, 76, 307, 427, 451
SfcI CTRYAG 1 cut(s) 300
SgrAI CRCCGGYG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 3 cut(s) 153, 227, 433
SspMI CTAG 2 cut(s) 30, 306
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 1 cut(s) 164
TaqI TCGA 1 cut(s) 105
TasI AATT 3 cut(s) 153, 227, 433
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TseI GCWGC 2 cut(s) 74, 383
TspDTI ATGAA 1 cut(s) 79
TspGWI ACGGA 1 cut(s) 38
XceI RCATGY 1 cut(s) 11
XspI CTAG 2 cut(s) 30, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.