AT4G37235

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015024
Physical Location & Seq
Forward (+)
17517743 .. 17519785
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37235.1

Sequence Viewer

Length: 459 bp
ATGGTAAGAACAACGGCGTCGTTTGGAACCAGCTCAAGCTTTGTTCTTCGTCTCGGACAAACTCTGTTTTCCTCTGCTTCGCTTCTTTTCATGTGCTTTAACGATGACGAAGATTTCTACGCTTACACCACCTTCTGTTATCTAGTCACAGTCATGGGTTTAGTGACACCTTGGAGCGTGACGTTAGCCCTAATGGAAGCTTACTCAATCCTCGTAAAAAAACTTCCTATGCAAGCAACAGTTATATCTGTCATCGTCGCTGGAGATTTTGTTTTGTCGTTTTTGTCATTGGGAGGTGCATGCTCGACGGCGAGCGTGGCCGTACTTTTGATGGACGCCGGAGAGAAGCAATGTGATCGGTATAAGCTATCGGCGACAATGGCGTTTTTGTCTTCGTTTCTTTCATTTGCTTCAACTTTCTTTAATTTTTGTCTTCTTCCTTCTCTAATGTCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

152

Amino Acids

16.55

Weight (kDa)

5.07

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 9 - 133 9.8e-22 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50810 AT3G50810 AT3G50810 AT4G37235
fragaria_vesca FvH4_1g14420
malus_domestica MD02G1157700.v1.1 MD15G1272400.v1.1
prunus_persica Prupe.7G146000_v2.0.a1
pyrus_communis pycom15g23600
rosa_chinensis RchiOBHm_Chr2g0103141
rosa_roxburghii Rroxscaffold_2G00139890
rosa_rugosa Rorug02G0112100
rosa_samantha Rh2BG167600 Rh2CG167900 Rh2DG166500
rosa_wichuraiana Rw2G012610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 318
AcyI GRCGYC 2 cut(s) 17, 336
AfaI GTAC 1 cut(s) 324
AgsI TTSAA 1 cut(s) 414
AluBI AGCT 4 cut(s) 33, 39, 200, 367
AluI AGCT 4 cut(s) 33, 39, 200, 367
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BbsI GAAGAC 2 cut(s) 384, 425
BccI CCATC 1 cut(s) 325
BceAI ACGGC 3 cut(s) 30, 305, 324
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 384, 425
BpmI CTGGAG 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 19
BsaHI GRCGYC 2 cut(s) 17, 336
BsaJI CCNNGG 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bse3DI GCAATG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 356
BshFI GGCC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 355
BspANI GGCC 1 cut(s) 320
BspLI GGNNCC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 1 cut(s) 355
BssNI GRCGYC 2 cut(s) 17, 336
BssT1I CCWWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 151, 241
BstACI GRCGYC 2 cut(s) 17, 336
BstC8I GCNNGC 3 cut(s) 234, 301, 313
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 1 cut(s) 355
BstMWI GCNNNNNNNGC 2 cut(s) 317, 380
BstNSI RCATGY 1 cut(s) 303
BstV2I GAAGAC 2 cut(s) 384, 425
BsuRI GGCC 1 cut(s) 320
Cac8I GCNNGC 3 cut(s) 234, 301, 313
CseI GACGC 2 cut(s) 6, 344
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 91, 154, 300
CviJI RGCY 6 cut(s) 33, 39, 188, 200, 320, 367
CviKI_1 RGCY 6 cut(s) 33, 39, 188, 200, 320, 367
CviQI GTAC 1 cut(s) 323
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 3 cut(s) 94, 157, 303
FaiI YATR 6 cut(s) 92, 155, 230, 245, 301, 363
FatI CATG 3 cut(s) 90, 153, 299
FspBI CTAG 1 cut(s) 143
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 339
HgaI GACGC 2 cut(s) 6, 344
Hin1I GRCGYC 2 cut(s) 17, 336
Hin1II CATG 3 cut(s) 94, 157, 303
HindIII AAGCTT 2 cut(s) 37, 198
HpaII CCGG 1 cut(s) 339
Hpy188I TCNGA 1 cut(s) 56
Hpy99I CGWCG 3 cut(s) 22, 260, 310
HpyAV CCTTC 2 cut(s) 142, 450
HpyCH4III ACNGT 2 cut(s) 151, 241
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 2 cut(s) 232, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 317, 380
HpySE526I ACGT 1 cut(s) 182
Hsp92I GRCGYC 2 cut(s) 17, 336
Hsp92II CATG 3 cut(s) 94, 157, 303
Kzo9I GATC 1 cut(s) 355
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 3 cut(s) 43, 246, 352
MaeI CTAG 1 cut(s) 143
MaeII ACGT 1 cut(s) 182
MaeIII GTNAC 3 cut(s) 145, 163, 178
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 5 cut(s) 38, 122, 384, 425, 428
MluCI AATT 1 cut(s) 424
MnlI CCTC 3 cut(s) 82, 221, 287
MseI TTAA 2 cut(s) 99, 423
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 339
MwoI GCNNNNNNNGC 2 cut(s) 317, 380
NdeII GATC 1 cut(s) 355
NlaIII CATG 3 cut(s) 94, 157, 303
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 3 cut(s) 145, 163, 178
NspI RCATGY 1 cut(s) 303
PaeI GCATGC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 28
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 99, 423
Sau3AI GATC 1 cut(s) 355
SetI ASST 8 cut(s) 35, 41, 134, 172, 185, 202, 298, 369
SmiMI CAYNNNNRTG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SphI GCATGC 1 cut(s) 303
Sse9I AATT 1 cut(s) 424
SspMI CTAG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 151, 241
TaiI ACGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 305
TasI AATT 1 cut(s) 424
Tru1I TTAA 2 cut(s) 99, 423
Tru9I TTAA 2 cut(s) 99, 423
TseFI GTSAC 3 cut(s) 145, 163, 178
Tsp45I GTSAC 3 cut(s) 145, 163, 178
TspDTI ATGAA 2 cut(s) 79, 393
XceI RCATGY 1 cut(s) 303
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.