Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015024

Physical Location & Seq

Genomic Coordinates Reverse (-)

17759809 .. 17761497

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATGAACTGCCGGGGTCGTTGGGAACCAGTGCCAGCTTGGCTCTGCGATTCGGGCAGACCATCTTCTCCACCGCCTCTCTTCTCTTCATGTGCTTGGACGTCGAGTTCTACAGCTACACCGCTTTCTGCTATTTGGTGACGGTAATGGGTTTGGTAGTTCCGTGGAGCATGACTCTGGTGATCGTTGATGCCTACTCTTTCTTCGTTAGATGTTTGCATCATCAACCAAGAATAATTACAATAATTATTTTAGGAGACTTGGCATTGTCATATCTCTCACTCGCTGCGGCTTGCACGACAGCTAGTACCACAAATTTCCTACTGTATCTCGACGGATCCTACTGCCCCGCCAAGTTATGTACAAGATATCAGTTATCTGCTGCAATGGCTTTCCTTTCTTGGTTTCTTTCACTAGGTTCCTCTCTGTTCAATCTCTGGCTTCTTCCTTCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

153

Amino Acids

16.78

Weight (kDa)

5.39

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50810 AT3G50810 AT3G50810 AT4G37235
fragaria_vesca	FvH4_1g14420
malus_domestica	MD02G1157700.v1.1 MD15G1272400.v1.1
prunus_persica	Prupe.7G146000_v2.0.a1
pyrus_communis	pycom15g23600
rosa_chinensis	RchiOBHm_Chr2g0103141
rosa_roxburghii	Rroxscaffold_2G00139890
rosa_rugosa	Rorug02G0112100
rosa_samantha	Rh2BG167600 Rh2CG167900 Rh2DG166500
rosa_wichuraiana	Rw2G012610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	105
AciI	CCGC	4 cut(s)	75, 123, 290, 351
AclWI	GGATC	2 cut(s)	333, 346
AcsI	RAATTY	1 cut(s)	316
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	310, 364
AgsI	TTSAA	1 cut(s)	433
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	3 cut(s)	39, 117, 305
AluI	AGCT	3 cut(s)	39, 117, 305
Alw26I	GTCTC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	333, 346
ApeKI	GCWGC	2 cut(s)	287, 383
ApoI	RAATTY	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	151, 193
BamHI	GGATCC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	274, 370
BccI	CCATC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	252
BfaI	CTAG	2 cut(s)	306, 416
BfmI	CTRYAG	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	288, 291, 384
BlsI	GCNGC	3 cut(s)	289, 292, 385
Bme1390I	CCNGG	1 cut(s)	15
BmiI	GGNNCC	3 cut(s)	28, 340, 421
BmrFI	CCNGG	1 cut(s)	15
BmsI	GCATC	2 cut(s)	181, 229
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
BpuMI	CCSGG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	14, 164
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	14, 164
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	274, 370
BsiSI	CCGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	252
Bsp1407I	TGTACA	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	183, 338
BspACI	CCGC	4 cut(s)	75, 123, 290, 351
BspLI	GGNNCC	3 cut(s)	28, 340, 421
BspPI	GGATC	2 cut(s)	333, 346
BsrDI	GCAATG	1 cut(s)	393
BsrGI	TGTACA	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	2 cut(s)	14, 164
BssMI	GATC	2 cut(s)	183, 338
BssNI	GRCGYC	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	145, 327
Bst6I	CTCTTC	2 cut(s)	87, 92
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	362
BstC8I	GCNNGC	2 cut(s)	37, 295
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	186, 341
BstMAI	GTCTC	1 cut(s)	252
BstMBI	GATC	2 cut(s)	183, 338
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 55, 389
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	274, 370
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	37, 295
Csp6I	GTAC	2 cut(s)	309, 363
CviAII	CATG	2 cut(s)	91, 172
CviJI	RGCY	7 cut(s)	39, 44, 117, 293, 305, 392, 442
CviKI_1	RGCY	7 cut(s)	39, 44, 117, 293, 305, 392, 442
CviQI	GTAC	2 cut(s)	309, 363
DpnI	GATC	2 cut(s)	185, 340
DpnII	GATC	2 cut(s)	183, 338
Eam1104I	CTCTTC	2 cut(s)	87, 92
EarI	CTCTTC	2 cut(s)	87, 92
Eco32I	GATATC	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	371
FaeI	CATG	2 cut(s)	94, 175
FaiI	YATR	4 cut(s)	92, 173, 274, 361
FatI	CATG	2 cut(s)	90, 171
FauI	CCCGC	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	288, 291, 384
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	3 cut(s)	288, 291, 384
FspBI	CTAG	2 cut(s)	306, 416
GluI	GCNGC	3 cut(s)	288, 291, 384
HapII	CCGG	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	94, 175
HinfI	GANTC	2 cut(s)	51, 175
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	2 cut(s)	151, 193
Hpy188III	TCNNGA	1 cut(s)	332
Hpy99I	CGWCG	2 cut(s)	107, 338
HpyAV	CCTTC	1 cut(s)	459
HpyCH4III	ACNGT	2 cut(s)	145, 327
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	3 cut(s)	220, 297, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 55, 389
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	94, 175
Kzo9I	GATC	2 cut(s)	183, 338
LmnI	GCTCC	1 cut(s)	168
LpnPI	CCDG	5 cut(s)	27, 43, 49, 164, 424
Lsp1109I	GCAGC	2 cut(s)	274, 370
LweI	GCATC	2 cut(s)	181, 229
MaeI	CTAG	2 cut(s)	306, 416
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	185, 340
MboI	GATC	2 cut(s)	183, 338
MboII	GAAGA	5 cut(s)	58, 74, 79, 196, 437
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	3 cut(s)	237, 246, 316
MlyI	GAGTC	1 cut(s)	169
MnlI	CCTC	2 cut(s)	88, 433
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	41, 55, 389
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	183, 338
NlaIII	CATG	2 cut(s)	94, 175
NlaIV	GGNNCC	3 cut(s)	28, 340, 421
NmuCI	GTSAC	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	289, 292, 385
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	28, 340, 421
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	2 cut(s)	310, 364
RsaNI	GTAC	2 cut(s)	309, 363
SatI	GCNGC	3 cut(s)	288, 291, 384
Sau3AI	GATC	2 cut(s)	183, 338
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	5 cut(s)	41, 105, 119, 307, 421
SfaNI	GCATC	2 cut(s)	181, 229
SfcI	CTRYAG	1 cut(s)	112
Sse9I	AATT	3 cut(s)	237, 246, 316
SsiI	CCGC	4 cut(s)	75, 123, 290, 351
SspMI	CTAG	2 cut(s)	306, 416
StyD4I	CCNGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	145, 327
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	105, 333
TasI	AATT	3 cut(s)	237, 246, 316
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	1 cut(s)	37
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	287, 383
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	21, 79
TspGWI	ACGGA	2 cut(s)	153, 351
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XspI	CTAG	2 cut(s)	306, 416
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.