FvH4_1g14420

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015024
Physical Location & Seq
Reverse (-)
8047451 .. 8049784
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g14420.t1

Sequence Viewer

Length: 459 bp
ATGGACGAACTGCCGGGCTCGTTGGGCACCAGTGCCAGCTTGGCTCTGCGTTTCGGCCAGACCATATTCTCCACCGCTTCTCTTCTCTTTATGTGCCTGGACGTCGAGTTCTACAGCTACACAGCTTTCTGTTATTTGGTGACAGTAATGGGCTTGGTAGTTCCATGGGGCATGACTTTAGTGATAGTGGATGCCTACTTTGTTTTTGTTAGATGCTTACCTCGTCAGCCAAGAATAATTATAATCCTCATTGCAGGAGACTTGGCTTTATCTTATCTCTCGCTAGCTGCAGCCTGCTCAACGGCTAGTACTACAATGCTCCTCCATGATGCTGATCGATCCTACTGCCCCGCAAAGTTGTGCACTAGATATCAGTTGTCCGCAGCAATGGCTTTCCTTTCTTGGTTTCTCTCTATGGGTTCTTGTCTGTTCAATCTTTGGCTTCTTCCTTCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

153

Amino Acids

16.74

Weight (kDa)

5.58

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 8 - 137 1.3e-24 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50810 AT3G50810 AT3G50810 AT4G37235
fragaria_vesca FvH4_1g14420
malus_domestica MD02G1157700.v1.1 MD15G1272400.v1.1
prunus_persica Prupe.7G146000_v2.0.a1
pyrus_communis pycom15g23600
rosa_chinensis RchiOBHm_Chr2g0103141
rosa_roxburghii Rroxscaffold_2G00139890
rosa_rugosa Rorug02G0112100
rosa_samantha Rh2BG167600 Rh2CG167900 Rh2DG166500
rosa_wichuraiana Rw2G012610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AatII GACGTC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 26
AciI CCGC 3 cut(s) 75, 351, 381
AclWI GGATC 1 cut(s) 333
AcoI YGGCCR 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 310
AgsI TTSAA 1 cut(s) 433
AjnI CCWGG 1 cut(s) 96
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 39, 117, 125, 287
AluI AGCT 4 cut(s) 39, 117, 125, 287
Alw21I GWGCWC 1 cut(s) 365
Alw26I GTCTC 1 cut(s) 252
Alw44I GTGCAC 1 cut(s) 361
AlwI GGATC 1 cut(s) 333
AoxI GGCC 1 cut(s) 55
ApaLI GTGCAC 1 cut(s) 361
ApeKI GCWGC 3 cut(s) 287, 290, 383
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 151
AsuNHI GCTAGC 1 cut(s) 283
BaeGI GKGCMC 2 cut(s) 29, 365
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 274, 302, 395
BceAI ACGGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 327, 361
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 3 cut(s) 284, 306, 366
BfmI CTRYAG 2 cut(s) 112, 288
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 3 cut(s) 288, 291, 384
BlsI GCNGC 3 cut(s) 289, 292, 385
BmcAI AGTACT 1 cut(s) 310
Bme1390I CCNGG 2 cut(s) 15, 98
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 2 cut(s) 15, 98
BmsI GCATC 3 cut(s) 181, 203, 319
BmtI GCTAGC 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 15
Bsa29I ATCGAT 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 2 cut(s) 249, 393
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 1 cut(s) 98
BseCI ATCGAT 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 333
BseMI GCAATG 2 cut(s) 249, 393
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 311
BseSI GKGCMC 2 cut(s) 29, 365
BseXI GCAGC 3 cut(s) 274, 302, 395
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 365
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 3 cut(s) 20, 29, 365
Bsp143I GATC 2 cut(s) 334, 338
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 3 cut(s) 75, 351, 381
BspANI GGCC 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 333
BspT107I GGYRCC 1 cut(s) 26
BsrDI GCAATG 2 cut(s) 249, 393
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 2 cut(s) 334, 338
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 3 cut(s) 37, 285, 295
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 2 cut(s) 337, 341
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 2 cut(s) 334, 338
BstMWI GCNNNNNNNGC 3 cut(s) 24, 41, 389
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 13, 96
BstSFI CTRYAG 2 cut(s) 112, 288
BstSLI GKGCMC 2 cut(s) 29, 365
BstV1I GCAGC 3 cut(s) 274, 302, 395
Bsu15I ATCGAT 1 cut(s) 337
BsuRI GGCC 1 cut(s) 57
BsuTUI ATCGAT 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 3 cut(s) 37, 285, 295
ClaI ATCGAT 1 cut(s) 337
Csp6I GTAC 1 cut(s) 309
CviAII CATG 3 cut(s) 165, 172, 326
CviQI GTAC 1 cut(s) 309
DpnI GATC 2 cut(s) 336, 340
DpnII GATC 2 cut(s) 334, 338
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 96
EcoRV GATATC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 3 cut(s) 168, 175, 329
FaiI YATR 8 cut(s) 65, 92, 166, 173, 242, 327, 416, 457
FatI CATG 3 cut(s) 164, 171, 325
FauI CCCGC 1 cut(s) 358
Fnu4HI GCNGC 3 cut(s) 288, 291, 384
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 3 cut(s) 288, 291, 384
FspBI CTAG 3 cut(s) 284, 306, 366
GluI GCNGC 3 cut(s) 288, 291, 384
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 168, 175, 329
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 363
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 459
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 3 cut(s) 254, 290, 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 41, 389
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 168, 175, 329
Kzo9I GATC 2 cut(s) 334, 338
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 8 cut(s) 27, 43, 49, 71, 83, 110, 240, 307
Lsp1109I GCAGC 3 cut(s) 274, 302, 395
LweI GCATC 3 cut(s) 181, 203, 319
MaeI CTAG 3 cut(s) 284, 306, 366
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 139
MalI GATC 2 cut(s) 336, 340
MboI GATC 2 cut(s) 334, 338
MboII GAAGA 2 cut(s) 74, 437
MhlI GDGCHC 3 cut(s) 20, 29, 365
MluCI AATT 1 cut(s) 237
MnlI CCTC 3 cut(s) 231, 257, 332
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 2 cut(s) 15, 98
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 24, 41, 389
NciI CCSGG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 164
NdeII GATC 2 cut(s) 334, 338
NheI GCTAGC 1 cut(s) 283
NlaIII CATG 3 cut(s) 168, 175, 329
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 1 cut(s) 139
PkrI GCNGC 3 cut(s) 289, 292, 385
PsiI TTATAA 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 292
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SatI GCNGC 3 cut(s) 288, 291, 384
Sau3AI GATC 2 cut(s) 334, 338
ScaI AGTACT 1 cut(s) 310
ScrFI CCNGG 2 cut(s) 15, 98
SduI GDGCHC 3 cut(s) 20, 29, 365
SetI ASST 6 cut(s) 41, 105, 119, 127, 223, 289
SfaNI GCATC 3 cut(s) 181, 203, 319
SfcI CTRYAG 2 cut(s) 112, 288
Sse9I AATT 1 cut(s) 237
SsiI CCGC 3 cut(s) 75, 351, 381
SspMI CTAG 3 cut(s) 284, 306, 366
StyD4I CCNGG 2 cut(s) 13, 96
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 105
TaqI TCGA 2 cut(s) 105, 337
TasI AATT 1 cut(s) 237
TatI WGTACW 1 cut(s) 308
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 3 cut(s) 287, 290, 383
Tsp45I GTSAC 1 cut(s) 139
TspRI CASTG 1 cut(s) 37
VneI GTGCAC 1 cut(s) 361
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 3 cut(s) 284, 306, 366
ZraI GACGTC 1 cut(s) 103
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.