Rh2BG167600

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0015024
Physical Location & Seq
Reverse (-)
14794245 .. 14796138
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG167600.1

Sequence Viewer

Length: 345 bp
ATGGACGAACTGCCGGGCTCGTTGGGCACCAGTGCCAGCTTGGCTCTGCGTTTCGGCCAGACCCTATTCTCCACCGCATCTCTTCTCTTTATGTGTTTGGACGTCGAGTTCTACAGCTACACAGCTTTCTGCTATTTGGTAACAGTAATGGGTTTGGTAGTTCCATGGGGCATGACTTTAGTGATAGTGGATGCCTACTCTGTTTTTGTTAGATGCTTACCTCGTCAACCAAGAATAATTATAATCCTCATTGTAGGAGACTTGGCTTTATCTTATCTCTCACTAGCTGCAGCCTGCTCAACAGCTAGTACCACAATGCTCCTACATGATGCTGGAAAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

114

Amino Acids

12.27

Weight (kDa)

4.94

Isoelectric Point (pI)

21.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 8 - 111 1.7e-21 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015024)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50810 AT3G50810 AT3G50810 AT4G37235
fragaria_vesca FvH4_1g14420
malus_domestica MD02G1157700.v1.1 MD15G1272400.v1.1
prunus_persica Prupe.7G146000_v2.0.a1
pyrus_communis pycom15g23600
rosa_chinensis RchiOBHm_Chr2g0103141
rosa_roxburghii Rroxscaffold_2G00139890
rosa_rugosa Rorug02G0112100
rosa_samantha Rh2BG167600 Rh2CG167900 Rh2DG166500
rosa_wichuraiana Rw2G012610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AatII GACGTC 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 26
AciI CCGC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 55
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 310
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 5 cut(s) 39, 117, 125, 287, 305
AluI AGCT 5 cut(s) 39, 117, 125, 287, 305
Alw26I GTCTC 1 cut(s) 252
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 287, 290
AsuC2I CCSGG 1 cut(s) 15
BaeGI GKGCMC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 20
BbvI GCAGC 2 cut(s) 274, 302
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 2 cut(s) 284, 306
BfmI CTRYAG 2 cut(s) 112, 288
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 2 cut(s) 288, 291
BlsI GCNGC 2 cut(s) 289, 292
Bme1390I CCNGG 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 4 cut(s) 86, 181, 203, 319
BpuMI CCSGG 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 274, 302
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 20, 29
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 292
BspT107I GGYRCC 1 cut(s) 26
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 164
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 87
BstACI GRCGYC 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 37, 295
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 24, 41
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 2 cut(s) 112, 288
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 274, 302
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 37, 295
Csp6I GTAC 1 cut(s) 309
CviAII CATG 3 cut(s) 165, 172, 326
CviQI GTAC 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 3 cut(s) 168, 175, 329
FaiI YATR 5 cut(s) 92, 166, 173, 242, 327
FatI CATG 3 cut(s) 164, 171, 325
Fnu4HI GCNGC 2 cut(s) 288, 291
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 288, 291
FspBI CTAG 2 cut(s) 284, 306
GluI GCNGC 2 cut(s) 288, 291
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 168, 175, 329
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 227
Hpy8I GTNNAC 1 cut(s) 227
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 41
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 168, 175, 329
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 6 cut(s) 27, 43, 49, 71, 307, 318
Lsp1109I GCAGC 2 cut(s) 274, 302
LweI GCATC 4 cut(s) 86, 181, 203, 319
MaeI CTAG 2 cut(s) 284, 306
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 139
MboII GAAGA 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 20, 29
MluCI AATT 1 cut(s) 237
MnlI CCTC 2 cut(s) 231, 257
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 24, 41
NciI CCSGG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 164
NlaIII CATG 3 cut(s) 168, 175, 329
NlaIV GGNNCC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 289, 292
PsiI TTATAA 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 28
PstI CTGCAG 1 cut(s) 292
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SatI GCNGC 2 cut(s) 288, 291
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 2 cut(s) 20, 29
SetI ASST 7 cut(s) 41, 105, 119, 127, 223, 289, 307
SfaNI GCATC 4 cut(s) 86, 181, 203, 319
SfcI CTRYAG 2 cut(s) 112, 288
Sse9I AATT 1 cut(s) 237
SsiI CCGC 1 cut(s) 75
SspMI CTAG 2 cut(s) 284, 306
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 237
TscAI CASTG 1 cut(s) 37
TseI GCWGC 2 cut(s) 287, 290
TspRI CASTG 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 2 cut(s) 284, 306
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.