AT3G50870

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012268
Physical Location & Seq
Forward (+)
18910947 .. 18912608
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50870.1

Sequence Viewer

Length: 888 bp
ATGATGCAGACTCCGTACACTACTTCAACGCAGGGGCAATATTGTCATTCTTGTGGAATGTTCCACCACCATAGCCAAAGCTGCTGCTACAACAACAACAACAACTCCAACGCCGGTTCTTACTCGATGGTCTTCTCCATGCAAAACGGTGGCGTTTTCGAGCAGAACGGTGAGGACTATCATCACTCTTCCTCCCTCGTTGACTGCACTCTCTCTCTTGGAACTCCTTCTACGAGGCTTTGTGAGGAAGATGAGAAACGTAGACGCTCTACTTCATCTGGTGCTTCTTCTTGCATCTCCAACTTTTGGGACTTGATTCACACCAAAAACAACAACTCCAAAACGGCACCGTACAATAACGTTCCTTCTTTCTCCGCTAACAAGCCAAGTCGCGGTTGTTCCGGTGGTGGTGGTGGCGGAGGAGGCGGTGGCGGAGGTGACTCTCTTCTCGCTAGACGCTGTGCCAACTGTGACACTACTTCTACTCCACTATGGAGGAATGGTCCTAGAGGCCCTAAGTCCCTATGCAACGCATGCGGCATTCGTTTCAAGAAGGAAGAGAGAAGAACTACTGCGGCTACAGGAAACACCGTCGTCGGAGCTGCACCGGTTCAAACCGACCAGTACGGGCATCACAACTCTGGCTACAATAATTACCATGCTGCCACTAATAACAACAATAATAATGGTACTCCGTGGGCTCATCACCACTCGACGCAGAGGGTTCCGTGTAATTATCCGGCAAATGAGATCAGGTTCATGGATGATTACGGCAGTGGAGTAGCAAACAACGTTGAATCCGACGGTGCTCACGGCGGTGTTCCGTTCCTTTCTTGGAGGCTTAATGTAGCGGATAGGGCAAGTCTTGTCCATGACTTTACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

295

Amino Acids

31.83

Weight (kDa)

8.22

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 154 - 188 2.7e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 306
AccI GTMKAC 1 cut(s) 262
AccII CGCG 1 cut(s) 393
AciI CCGC 9 cut(s) 375, 393, 417, 426, 432, 537, 575, 816, 851
AclI AACGTT 2 cut(s) 360, 792
AfaI GTAC 4 cut(s) 17, 353, 626, 691
AfiI CCNNNNNNNGG 2 cut(s) 306, 392
AgeI ACCGGT 1 cut(s) 607
AgsI TTSAA 4 cut(s) 27, 550, 614, 797
AleI CACNNNNGTG 1 cut(s) 816
AluBI AGCT 2 cut(s) 81, 602
AluI AGCT 2 cut(s) 81, 602
Alw21I GWGCWC 1 cut(s) 811
AoxI GGCC 1 cut(s) 511
ApeKI GCWGC 4 cut(s) 81, 84, 602, 662
AsiGI ACCGGT 1 cut(s) 607
Asp700I GAANNNNTTC 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 503, 512
AsuHPI GGTGA 3 cut(s) 182, 449, 698
AvaII GGWCC 1 cut(s) 503
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 811
BbvI GCAGC 4 cut(s) 68, 71, 589, 649
BccI CCATC 1 cut(s) 121
BceAI ACGGC 3 cut(s) 360, 787, 829
BfaI CTAG 2 cut(s) 453, 507
BfmI CTRYAG 1 cut(s) 579
BisI GCNGC 6 cut(s) 82, 85, 538, 576, 603, 663
BlsI GCNGC 6 cut(s) 83, 86, 539, 577, 604, 664
Bme18I GGWCC 1 cut(s) 503
BmgT120I GGNCC 2 cut(s) 503, 512
BmiI GGNNCC 2 cut(s) 348, 726
BmsI GCATC 2 cut(s) 303, 640
BpiI GAAGAC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 695
BsaWI WCCGGW 2 cut(s) 401, 607
Bsc4I CCNNNNNNNGG 2 cut(s) 306, 392
Bse118I RCCGGY 2 cut(s) 113, 607
Bse1I ACTGG 1 cut(s) 622
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 2 cut(s) 306, 392
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 4 cut(s) 68, 71, 589, 649
BsgI GTGCAG 2 cut(s) 190, 588
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 1 cut(s) 513
BshNI GGYRCC 1 cut(s) 346
BshTI ACCGGT 1 cut(s) 607
BsiHKAI GWGCWC 1 cut(s) 811
BsiSI CCGG 4 cut(s) 114, 402, 608, 740
BslFI GGGAC 2 cut(s) 323, 505
BslI CCNNNNNNNGG 2 cut(s) 306, 392
BsmFI GGGAC 2 cut(s) 323, 505
BsmI GAATGC 1 cut(s) 540
BsnI GGCC 1 cut(s) 513
Bsp1286I GDGCHC 2 cut(s) 703, 811
Bsp143I GATC 1 cut(s) 750
BspACI CCGC 9 cut(s) 375, 393, 417, 426, 432, 537, 575, 816, 851
BspANI GGCC 1 cut(s) 513
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 348, 726
BspT107I GGYRCC 1 cut(s) 346
BsrFI RCCGGY 2 cut(s) 113, 607
BsrI ACTGG 1 cut(s) 622
BssAI RCCGGY 2 cut(s) 113, 607
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 1 cut(s) 750
Bst4CI ACNGT 6 cut(s) 149, 170, 351, 470, 592, 806
Bst6I CTCTTC 3 cut(s) 193, 450, 552
BstAPI GCANNNNNTGC 1 cut(s) 534
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 1 cut(s) 516
BstDSI CCRYGG 1 cut(s) 695
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 1 cut(s) 393
BstKTI GATC 1 cut(s) 753
BstMBI GATC 1 cut(s) 750
BstMWI GCNNNNNNNGC 4 cut(s) 81, 423, 534, 857
BstNSI RCATGY 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 579
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 4 cut(s) 68, 71, 589, 649
BstV2I GAAGAC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 695
BtsCI GGATG 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 1 cut(s) 781
Cac8I GCNNGC 1 cut(s) 535
Cfr10I RCCGGY 2 cut(s) 113, 607
Cfr13I GGNCC 2 cut(s) 503, 512
CseI GACGC 3 cut(s) 273, 465, 724
Csp6I GTAC 4 cut(s) 16, 352, 625, 690
CspAI ACCGGT 1 cut(s) 607
CviAII CATG 5 cut(s) 139, 534, 659, 760, 872
CviQI GTAC 4 cut(s) 16, 352, 625, 690
DdeI CTNAG 1 cut(s) 516
DpnI GATC 1 cut(s) 752
DpnII GATC 1 cut(s) 750
Eam1104I CTCTTC 3 cut(s) 193, 450, 552
EarI CTCTTC 3 cut(s) 193, 450, 552
EciI GGCGGA 2 cut(s) 432, 447
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 703
FaeI CATG 5 cut(s) 142, 537, 662, 763, 875
FaiI YATR 8 cut(s) 72, 140, 493, 526, 535, 660, 761, 873
FaqI GGGAC 2 cut(s) 323, 505
FatI CATG 5 cut(s) 138, 533, 658, 759, 871
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 6 cut(s) 82, 85, 538, 576, 603, 663
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 6 cut(s) 82, 85, 538, 576, 603, 663
FspBI CTAG 2 cut(s) 453, 507
GluI GCNGC 6 cut(s) 82, 85, 538, 576, 603, 663
HaeIII GGCC 1 cut(s) 513
HapII CCGG 4 cut(s) 114, 402, 608, 740
HgaI GACGC 3 cut(s) 273, 465, 724
Hin1II CATG 5 cut(s) 142, 537, 662, 763, 875
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 4 cut(s) 10, 316, 440, 797
HpaII CCGG 4 cut(s) 114, 402, 608, 740
HphI GGTGA 3 cut(s) 182, 449, 698
Hpy166II GTNNAC 3 cut(s) 18, 202, 263
Hpy188I TCNGA 2 cut(s) 599, 802
Hpy188III TCNNGA 1 cut(s) 550
Hpy8I GTNNAC 3 cut(s) 18, 202, 263
Hpy99I CGWCG 4 cut(s) 596, 599, 718, 806
HpyAV CCTTC 3 cut(s) 237, 375, 547
HpyCH4III ACNGT 6 cut(s) 149, 170, 351, 470, 592, 806
HpyCH4IV ACGT 3 cut(s) 259, 360, 792
HpyCH4V TGCA 6 cut(s) 7, 142, 207, 294, 528, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 423, 534, 857
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 3 cut(s) 259, 360, 792
Hsp92II CATG 5 cut(s) 142, 537, 662, 763, 875
Kzo9I GATC 1 cut(s) 750
LmnI GCTCC 1 cut(s) 599
Lsp1109I GCAGC 4 cut(s) 68, 71, 589, 649
LweI GCATC 2 cut(s) 303, 640
MaeI CTAG 2 cut(s) 453, 507
MaeII ACGT 3 cut(s) 259, 360, 792
MaeIII GTNAC 2 cut(s) 437, 470
MalI GATC 1 cut(s) 752
MboI GATC 1 cut(s) 750
MboII GAAGA 7 cut(s) 124, 180, 260, 279, 437, 569, 576
MhlI GDGCHC 2 cut(s) 703, 811
MluCI AATT 2 cut(s) 652, 733
MlyI GAGTC 2 cut(s) 4, 434
MmeI TCCRAC 4 cut(s) 132, 324, 577, 825
MroXI GAANNNNTTC 1 cut(s) 226
MseI TTAA 1 cut(s) 843
MslI CAYNNNNRTG 2 cut(s) 51, 816
MspI CCGG 4 cut(s) 114, 402, 608, 740
Mva1269I GAATGC 1 cut(s) 540
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 4 cut(s) 81, 423, 534, 857
NdeII GATC 1 cut(s) 750
NlaIII CATG 5 cut(s) 142, 537, 662, 763, 875
NlaIV GGNNCC 2 cut(s) 348, 726
NmuCI GTSAC 2 cut(s) 437, 470
NspI RCATGY 1 cut(s) 537
OliI CACNNNNGTG 1 cut(s) 816
PaeI GCATGC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PctI GAATGC 1 cut(s) 540
PdmI GAANNNNTTC 1 cut(s) 226
PfeI GAWTC 2 cut(s) 316, 797
PflMI CCANNNNNTGG 1 cut(s) 306
PinAI ACCGGT 1 cut(s) 607
PkrI GCNGC 6 cut(s) 83, 86, 539, 577, 604, 664
PleI GAGTC 2 cut(s) 4, 434
PpsI GAGTC 2 cut(s) 4, 434
Psp1406I AACGTT 2 cut(s) 360, 792
PspN4I GGNNCC 2 cut(s) 348, 726
PspPI GGNCC 2 cut(s) 503, 512
PsrI GAACNNNNNNTAC 2 cut(s) 214, 246
RsaI GTAC 4 cut(s) 17, 353, 626, 691
RsaNI GTAC 4 cut(s) 16, 352, 625, 690
RseI CAYNNNNRTG 2 cut(s) 51, 816
SaqAI TTAA 1 cut(s) 843
SatI GCNGC 6 cut(s) 82, 85, 538, 576, 603, 663
Sau3AI GATC 1 cut(s) 750
Sau96I GGNCC 2 cut(s) 503, 512
SchI GAGTC 2 cut(s) 4, 434
SduI GDGCHC 2 cut(s) 703, 811
SetI ASST 7 cut(s) 83, 262, 363, 439, 604, 758, 795
SfaNI GCATC 2 cut(s) 303, 640
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 503
SmiMI CAYNNNNRTG 2 cut(s) 51, 816
SphI GCATGC 1 cut(s) 537
Sse9I AATT 2 cut(s) 652, 733
SsiI CCGC 9 cut(s) 375, 393, 417, 426, 432, 537, 575, 816, 851
SspI AATATT 1 cut(s) 41
SspMI CTAG 2 cut(s) 453, 507
TaaI ACNGT 6 cut(s) 149, 170, 351, 470, 592, 806
TaiI ACGT 3 cut(s) 262, 363, 795
TaqI TCGA 3 cut(s) 125, 159, 713
TasI AATT 2 cut(s) 652, 733
TauI GCSGC 2 cut(s) 540, 578
TfiI GAWTC 2 cut(s) 316, 797
Tru1I TTAA 1 cut(s) 843
Tru9I TTAA 1 cut(s) 843
TscAI CASTG 1 cut(s) 781
TseFI GTSAC 2 cut(s) 437, 470
TseI GCWGC 4 cut(s) 81, 84, 602, 662
Tsp45I GTSAC 2 cut(s) 437, 470
TspDTI ATGAA 2 cut(s) 264, 748
TspGWI ACGGA 3 cut(s) 684, 717, 813
TspRI CASTG 1 cut(s) 781
Van91I CCANNNNNTGG 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 503
XceI RCATGY 1 cut(s) 537
XmiI GTMKAC 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 226
XspI CTAG 2 cut(s) 453, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.