RLG00000017079

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012268
Physical Location & Seq
Forward (+)
12647483 .. 12648327
845 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017079

Sequence Viewer

Length: 669 bp
ATGTTGTTCTCCATGCCGAACAATCATCACAAGGCGTACGATCAATACGAGCCGTCGGATCACCACCACATGTACTCCTTCGCCTCCCCTTCTTCTGTCGATTGCACTCTCTCCCTAGGCACGCCGTCCACTCGTCTCACAGCCGAGGACGGCAACGACGACAAGCGCAGCGGACTGCACGAGCGACGCTCCGTTTCGAACTTCTGCTGGGACTTGTTGCAACCCAAGCACGCCACGTCAGCACCAAAAAACGGCAGCGGCAACCGCGGCGGCGCCGGGAATAACGATTCGCTTCTGGCTCGCCGCTGCGCCAACTGCGACACCACCTCGACACCGCTCTGGCGAAACGGCCCACGAGGCCCAAAGTCGCTTTGCAATGCCTGTGGAATCCGGTTCAAGAAGGAAGAGAGACGAGCCACCGCCGCAGCCGCCACGTCATCTAACGGCGCAACCTCGTCCGGCAGCCATTCGTGGATTAACAACTCTCAGACTCAGAAAATGCAGTGCTACGCTCCTTCAATGAACGGAAACGAATTCCGGTTCATGGACGATCACGACATGATGACGTCTCACGATCCGGCCGACGCCGGCGGCGGCGGCATTCCGTTCCTTTCGTGGCGCCTCAACGTCACAGACAGACCAAGCCTCGTCCATGACTTCACCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

223

Amino Acids

24.35

Weight (kDa)

8.19

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 103 - 137 1.8e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 569
AccB1I GGYRCC 2 cut(s) 272, 618
AccBSI CCGCTC 1 cut(s) 337
AccII CGCG 1 cut(s) 267
AclWI GGATC 2 cut(s) 66, 569
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 1 cut(s) 533
AcyI GRCGYC 4 cut(s) 273, 566, 585, 619
AfaI GTAC 2 cut(s) 38, 74
AfiI CCNNNNNNNGG 2 cut(s) 251, 544
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 397, 519
AjiI CACGTC 2 cut(s) 237, 435
Alw26I GTCTC 3 cut(s) 140, 403, 573
AlwI GGATC 2 cut(s) 66, 569
AoxI GGCC 3 cut(s) 349, 358, 579
ApeKI GCWGC 5 cut(s) 168, 255, 306, 425, 462
ApoI RAATTY 1 cut(s) 533
AspA2I CCTAGG 1 cut(s) 115
AspLEI GCGC 5 cut(s) 168, 275, 311, 449, 621
AspS9I GGNCC 2 cut(s) 350, 359
AsuC2I CCSGG 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 53, 652
AsuII TTCGAA 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 115
BanI GGYRCC 2 cut(s) 272, 618
BauI CACGAG 2 cut(s) 179, 354
BbvI GCAGC 5 cut(s) 180, 267, 293, 437, 474
BceAI ACGGC 6 cut(s) 37, 109, 166, 268, 364, 460
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 140, 403, 573
BfaI CTAG 1 cut(s) 116
BfoI RGCGCY 2 cut(s) 276, 622
BglI GCCNNNNNGGC 1 cut(s) 357
BlnI CCTAGG 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 277
BmgBI CACGTC 2 cut(s) 237, 435
BmgT120I GGNCC 2 cut(s) 350, 359
BmiI GGNNCC 2 cut(s) 274, 620
BmrFI CCNGG 1 cut(s) 277
BplI GAGNNNNNCTC 2 cut(s) 173, 205
Bpu14I TTCGAA 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 277
BsaHI GRCGYC 4 cut(s) 273, 566, 585, 619
BsaJI CCNNGG 3 cut(s) 115, 144, 265
BsaWI WCCGGW 2 cut(s) 390, 537
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 544
Bse118I RCCGGY 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 382
BseDI CCNNGG 3 cut(s) 115, 144, 265
BseLI CCNNNNNNNGG 2 cut(s) 251, 544
BseMI GCAATG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 500, 506
BseX3I CGGCCG 1 cut(s) 579
BseXI GCAGC 5 cut(s) 180, 267, 293, 437, 474
BseYI CCCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 582
BshFI GGCC 3 cut(s) 351, 360, 581
BshNI GGYRCC 2 cut(s) 272, 618
BsiEI CGRYCG 1 cut(s) 582
BsiSI CCGG 6 cut(s) 276, 391, 459, 538, 578, 588
BsiWI CGTACG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 251, 544
BsmAI GTCTC 3 cut(s) 140, 403, 573
BsmBI CGTCTC 3 cut(s) 140, 403, 573
BsmFI GGGAC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 3 cut(s) 351, 360, 581
Bsp119I TTCGAA 1 cut(s) 197
Bsp143I GATC 4 cut(s) 40, 58, 550, 574
BspANI GGCC 3 cut(s) 351, 360, 581
BspCNI CTCAG 2 cut(s) 499, 505
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 2 cut(s) 274, 620
BspPI GGATC 2 cut(s) 66, 569
BspT104I TTCGAA 1 cut(s) 197
BspT107I GGYRCC 2 cut(s) 272, 618
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 587
BssAI RCCGGY 1 cut(s) 587
BssECI CCNNGG 3 cut(s) 115, 144, 265
BssMI GATC 4 cut(s) 40, 58, 550, 574
BssNI GRCGYC 4 cut(s) 273, 566, 585, 619
BssSI CACGAG 2 cut(s) 179, 354
BssT1I CCWWGG 1 cut(s) 115
Bst2BI CACGAG 2 cut(s) 179, 354
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 4 cut(s) 273, 566, 585, 619
BstBI TTCGAA 1 cut(s) 197
BstC8I GCNNGC 4 cut(s) 122, 231, 301, 589
BstDEI CTNAG 2 cut(s) 486, 492
BstDSI CCRYGG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 2 cut(s) 276, 622
BstHHI GCGC 5 cut(s) 168, 275, 311, 449, 621
BstKTI GATC 4 cut(s) 43, 61, 553, 577
BstMAI GTCTC 3 cut(s) 140, 403, 573
BstMBI GATC 4 cut(s) 40, 58, 550, 574
BstMCI CGRYCG 1 cut(s) 582
BstMWI GCNNNNNNNGC 9 cut(s) 226, 239, 264, 267, 315, 357, 422, 428, 597
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 275
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 5 cut(s) 180, 267, 293, 437, 474
BstZI CGGCCG 1 cut(s) 579
BsuRI GGCC 3 cut(s) 351, 360, 581
BtgI CCRYGG 1 cut(s) 265
BtrI CACGTC 2 cut(s) 237, 435
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 122, 231, 301, 589
CfoI GCGC 5 cut(s) 168, 275, 311, 449, 621
Cfr10I RCCGGY 1 cut(s) 587
Cfr13I GGNCC 2 cut(s) 350, 359
Cfr42I CCGCGG 1 cut(s) 268
CseI GACGC 2 cut(s) 195, 593
Csp6I GTAC 2 cut(s) 37, 73
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 5 cut(s) 13, 70, 544, 559, 653
CviQI GTAC 2 cut(s) 37, 73
DdeI CTNAG 2 cut(s) 486, 492
DinI GGCGCC 2 cut(s) 274, 620
DpnI GATC 4 cut(s) 42, 60, 552, 576
DpnII GATC 4 cut(s) 40, 58, 550, 574
EaeI YGGCCR 1 cut(s) 579
EagI CGGCCG 1 cut(s) 579
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EclXI CGGCCG 1 cut(s) 579
Eco130I CCWWGG 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 115
EgeI GGCGCC 2 cut(s) 274, 620
EheI GGCGCC 2 cut(s) 274, 620
ErhI CCWWGG 1 cut(s) 115
Esp3I CGTCTC 3 cut(s) 140, 403, 573
FaeI CATG 5 cut(s) 16, 73, 547, 562, 656
FaiI YATR 5 cut(s) 14, 71, 545, 560, 654
FaqI GGGAC 1 cut(s) 224
FatI CATG 5 cut(s) 12, 69, 543, 558, 652
FspBI CTAG 1 cut(s) 116
GlaI GCGC 5 cut(s) 167, 274, 310, 448, 620
GsaI CCCAGC 1 cut(s) 211
HaeII RGCGCY 2 cut(s) 276, 622
HaeIII GGCC 3 cut(s) 351, 360, 581
HapII CCGG 6 cut(s) 276, 391, 459, 538, 578, 588
HgaI GACGC 2 cut(s) 195, 593
HhaI GCGC 5 cut(s) 168, 275, 311, 449, 621
Hin1I GRCGYC 4 cut(s) 273, 566, 585, 619
Hin1II CATG 5 cut(s) 16, 73, 547, 562, 656
Hin6I GCGC 5 cut(s) 166, 273, 309, 447, 619
HinP1I GCGC 5 cut(s) 166, 273, 309, 447, 619
HinfI GANTC 3 cut(s) 287, 387, 490
HpaII CCGG 6 cut(s) 276, 391, 459, 538, 578, 588
HphI GGTGA 2 cut(s) 53, 652
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 3 cut(s) 58, 489, 495
Hpy188III TCNNGA 3 cut(s) 397, 554, 572
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 4 cut(s) 58, 161, 189, 587
HpyAV CCTTC 4 cut(s) 88, 99, 394, 525
HpyCH4IV ACGT 4 cut(s) 236, 434, 566, 627
HpyCH4V TGCA 5 cut(s) 105, 178, 220, 375, 502
HpyF10VI GCNNNNNNNGC 9 cut(s) 226, 239, 264, 267, 315, 357, 422, 428, 597
HpyF3I CTNAG 2 cut(s) 486, 492
HpySE526I ACGT 4 cut(s) 236, 434, 566, 627
Hsp92I GRCGYC 4 cut(s) 273, 566, 585, 619
Hsp92II CATG 5 cut(s) 16, 73, 547, 562, 656
HspAI GCGC 5 cut(s) 166, 273, 309, 447, 619
KasI GGCGCC 2 cut(s) 272, 618
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
KspI CCGCGG 1 cut(s) 268
Kzo9I GATC 4 cut(s) 40, 58, 550, 574
LmnI GCTCC 2 cut(s) 194, 517
Lsp1109I GCAGC 5 cut(s) 180, 267, 293, 437, 474
MaeI CTAG 1 cut(s) 116
MaeII ACGT 4 cut(s) 236, 434, 566, 627
MaeIII GTNAC 1 cut(s) 628
MalI GATC 4 cut(s) 42, 60, 552, 576
MbiI CCGCTC 1 cut(s) 337
MboI GATC 4 cut(s) 40, 58, 550, 574
MboII GAAGA 2 cut(s) 84, 416
MluCI AATT 1 cut(s) 533
Mly113I GGCGCC 2 cut(s) 273, 619
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 7 cut(s) 94, 139, 337, 350, 463, 632, 656
MreI CGCCGGCG 1 cut(s) 587
MroNI GCCGGC 1 cut(s) 587
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 4 cut(s) 171, 258, 267, 306
MspI CCGG 6 cut(s) 276, 391, 459, 538, 578, 588
MspR9I CCNGG 1 cut(s) 277
Mva1269I GAATGC 1 cut(s) 600
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 9 cut(s) 226, 239, 264, 267, 315, 357, 422, 428, 597
NaeI GCCGGC 1 cut(s) 589
NarI GGCGCC 2 cut(s) 273, 619
NciI CCSGG 1 cut(s) 277
NdeII GATC 4 cut(s) 40, 58, 550, 574
NgoMIV GCCGGC 1 cut(s) 587
NlaIII CATG 5 cut(s) 16, 73, 547, 562, 656
NlaIV GGNNCC 2 cut(s) 274, 620
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 628
NspI RCATGY 1 cut(s) 73
NspV TTCGAA 1 cut(s) 197
PciI ACATGT 1 cut(s) 69
PcsI WCGNNNNNNNCGW 3 cut(s) 45, 156, 579
PctI GAATGC 1 cut(s) 600
PdiI GCCGGC 1 cut(s) 589
PfeI GAWTC 2 cut(s) 287, 387
Pfl23II CGTACG 1 cut(s) 36
PleI GAGTC 1 cut(s) 484
PluTI GGCGCC 2 cut(s) 276, 622
PpsI GAGTC 1 cut(s) 484
PscI ACATGT 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 207
PspLI CGTACG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 274, 620
PspPI GGNCC 2 cut(s) 350, 359
RsaI GTAC 2 cut(s) 38, 74
RsaNI GTAC 2 cut(s) 37, 73
SacII CCGCGG 1 cut(s) 268
SaqAI TTAA 1 cut(s) 477
Sau3AI GATC 4 cut(s) 40, 58, 550, 574
Sau96I GGNCC 2 cut(s) 350, 359
SchI GAGTC 1 cut(s) 484
ScrFI CCNGG 1 cut(s) 277
SetI ASST 6 cut(s) 239, 329, 437, 455, 569, 630
SfiI GGCCNNNNNGGCC 1 cut(s) 357
SfoI GGCGCC 2 cut(s) 274, 620
Sfr303I CCGCGG 1 cut(s) 268
SfuI TTCGAA 1 cut(s) 197
SgrAI CRCCGGYG 1 cut(s) 587
SgrBI CCGCGG 1 cut(s) 268
Sse9I AATT 1 cut(s) 533
SspDI GGCGCC 2 cut(s) 272, 618
SspMI CTAG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 115
TaiI ACGT 4 cut(s) 239, 437, 569, 630
TaqI TCGA 3 cut(s) 99, 197, 329
TasI AATT 1 cut(s) 533
TatI WGTACW 1 cut(s) 72
TauI GCSGC 9 cut(s) 261, 270, 273, 306, 425, 431, 594, 597, 600
TfiI GAWTC 2 cut(s) 287, 387
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TscAI CASTG 1 cut(s) 509
TseFI GTSAC 1 cut(s) 628
TseI GCWGC 5 cut(s) 168, 255, 306, 425, 462
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 2 cut(s) 532, 536
TspGWI ACGGA 3 cut(s) 181, 540, 594
TspRI CASTG 1 cut(s) 509
XapI RAATTY 1 cut(s) 533
XceI RCATGY 1 cut(s) 73
XmaJI CCTAGG 1 cut(s) 115
XspI CTAG 1 cut(s) 116
ZraI GACGTC 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.