MD15G1260900.v1.1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012268
Physical Location & Seq
Forward (+)
22315902 .. 22317338
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1260900.v1.1.491

Sequence Viewer

Length: 810 bp
ATGCATAGGTGCAGTAGTGGCTCTTCACATGGCGGCAACATGGTCGGCGGTCCATGTTCGTGCGGTGTCCTTCACCATACCCAATCCAACTCCTCCTTCTCCATGCTCTTCTCCATGCCTAATCACCACAAGCCGTACGATCATATTCATCACGAAACATCGTACGATCATCATCACATGTACCCGTTCGCATCCCCATCGTCCTCCGTCGATTGCACTCTCTCCCTAGGAACTCCCTCGACCCGTTTGACCGAAAACGACGCCGTTTCCGACGACAGGCGTGCGCGCAACGGCGAGCGGCGCTCCGGTAACTGCGTTTCCAACTTCTGCTGGGACTTGTTGCAGCCCAATAAGTCATCTCCGTCTTCCCATCACAAGAACGGCAGCCGCGGTGGCAATATCAACGGCGTTACTAACGCTGTCAGTGGTAATAACGATCCCCTTCTCGCTCGCCGCTGCGCTAACTGTGACACCACCTCCACACCTCTCTGGAGAAACGGTCCAAGAGGCCCCAAGTCACTGTGCAATGCCTGCGGCATTCGGTTCAAGAAAGAAGAGAGACGTGCCACTGCGGCAGCAGCCAACGGCGGTGGTTCGAGTGTCGTAGGAATGGAGTCTAACGGATACCACCACCACAACTCATGGATTCCGCACTCGCAGACCCAGAAAATGGCATGCTTTGGTAACGAATTTCGGTTCATCGAAGACGACACCGTGCACCACGAAAACGACATGAACGGCATCCCCTTCCTGTCCTGGCGCCTCAACGTCACTGACAGGCCAAGCCTTGTCCATGATTTCACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

270

Amino Acids

29.61

Weight (kDa)

8.32

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 153 - 187 2.3e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 759
AccB7I CCANNNNNTGG 1 cut(s) 670
AccBSI CCGCTC 1 cut(s) 298
AccII CGCG 2 cut(s) 286, 390
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 1 cut(s) 689
AcyI GRCGYC 2 cut(s) 261, 760
AfaI GTAC 3 cut(s) 137, 164, 182
AfiI CCNNNNNNNGG 2 cut(s) 276, 670
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 547
AjiI CACGTC 1 cut(s) 563
AjnI CCWGG 1 cut(s) 755
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
Alw21I GWGCWC 1 cut(s) 720
Alw26I GTCTC 1 cut(s) 553
Alw44I GTGCAC 1 cut(s) 716
AlwI GGATC 1 cut(s) 431
AoxI GGCC 2 cut(s) 508, 779
ApaLI GTGCAC 1 cut(s) 716
ApeKI GCWGC 5 cut(s) 343, 384, 456, 575, 578
ApoI RAATTY 1 cut(s) 689
AspA2I CCTAGG 1 cut(s) 226
AspLEI GCGC 5 cut(s) 286, 288, 303, 461, 762
AspS9I GGNCC 3 cut(s) 50, 500, 509
AsuHPI GGTGA 2 cut(s) 65, 116
AvaII GGWCC 2 cut(s) 50, 500
AvrII CCTAGG 1 cut(s) 226
BaeGI GKGCMC 1 cut(s) 720
BanI GGYRCC 1 cut(s) 759
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
BbsI GAAGAC 2 cut(s) 357, 711
Bbv12I GWGCWC 1 cut(s) 720
BbvI GCAGC 5 cut(s) 355, 396, 443, 587, 590
BccI CCATC 2 cut(s) 205, 378
BceAI ACGGC 7 cut(s) 118, 248, 307, 397, 421, 601, 754
BcgI CGANNNNNNTGC 6 cut(s) 25, 59, 180, 214, 263, 297
BciT130I CCWGG 1 cut(s) 757
BciVI GTATCC 1 cut(s) 617
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 1 cut(s) 227
BfoI RGCGCY 2 cut(s) 304, 763
BfuI GTATCC 1 cut(s) 617
BglI GCCNNNNNGGC 2 cut(s) 393, 572
BlnI CCTAGG 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 757
Bme18I GGWCC 2 cut(s) 50, 500
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 3 cut(s) 50, 500, 509
BmiI GGNNCC 2 cut(s) 511, 761
BmrFI CCNGG 1 cut(s) 757
BmsI GCATC 2 cut(s) 200, 750
BpiI GAAGAC 2 cut(s) 357, 711
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 1 cut(s) 511
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 2 cut(s) 261, 760
BsaJI CCNNGG 2 cut(s) 226, 388
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 4 cut(s) 461, 484, 491, 514
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 670
Bse3DI GCAATG 1 cut(s) 532
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 757
BseDI CCNNGG 2 cut(s) 226, 388
BseGI GGATG 2 cut(s) 191, 741
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 276, 670
BseMI GCAATG 1 cut(s) 532
BsePI GCGCGC 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 720
BseXI GCAGC 5 cut(s) 355, 396, 443, 587, 590
BseYI CCCAGC 1 cut(s) 330
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 2 cut(s) 286, 390
BshFI GGCC 2 cut(s) 510, 781
BshNI GGYRCC 1 cut(s) 759
BsiHKAI GWGCWC 1 cut(s) 720
BsiSI CCGG 1 cut(s) 306
BsiWI CGTACG 2 cut(s) 135, 162
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 276, 670
BsmAI GTCTC 1 cut(s) 553
BsmBI CGTCTC 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 2 cut(s) 510, 781
Bsp1286I GDGCHC 1 cut(s) 720
Bsp143I GATC 3 cut(s) 139, 166, 436
BspANI GGCC 2 cut(s) 510, 781
BspFNI CGCG 2 cut(s) 286, 390
BspLI GGNNCC 2 cut(s) 511, 761
BspPI GGATC 1 cut(s) 431
BspQI GCTCTTC 2 cut(s) 28, 113
BspT107I GGYRCC 1 cut(s) 759
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 532
BssECI CCNNGG 2 cut(s) 226, 388
BssHII GCGCGC 1 cut(s) 284
BssMI GATC 3 cut(s) 139, 166, 436
BssNI GRCGYC 2 cut(s) 261, 760
BssT1I CCWWGG 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 757
Bst4CI ACNGT 4 cut(s) 467, 500, 522, 715
Bst6I CTCTTC 3 cut(s) 28, 113, 549
BstACI GRCGYC 2 cut(s) 261, 760
BstAPI GCANNNNNTGC 1 cut(s) 531
BstC8I GCNNGC 6 cut(s) 282, 286, 296, 451, 532, 676
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 2 cut(s) 191, 741
BstFNI CGCG 2 cut(s) 286, 390
BstH2I RGCGCY 2 cut(s) 304, 763
BstHHI GCGC 5 cut(s) 286, 288, 303, 461, 762
BstKTI GATC 3 cut(s) 142, 169, 439
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 3 cut(s) 139, 166, 436
BstMWI GCNNNNNNNGC 6 cut(s) 18, 300, 393, 531, 572, 578
BstNI CCWGG 1 cut(s) 757
BstNSI RCATGY 2 cut(s) 181, 678
BstSCI CCNGG 1 cut(s) 755
BstSLI GKGCMC 1 cut(s) 720
BstUI CGCG 2 cut(s) 286, 390
BstV1I GCAGC 5 cut(s) 355, 396, 443, 587, 590
BstV2I GAAGAC 2 cut(s) 357, 711
BsuI GTATCC 1 cut(s) 617
BsuRI GGCC 2 cut(s) 510, 781
BtgI CCRYGG 1 cut(s) 388
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 2 cut(s) 191, 741
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 4 cut(s) 430, 518, 567, 771
Cac8I GCNNGC 6 cut(s) 282, 286, 296, 451, 532, 676
CfoI GCGC 5 cut(s) 286, 288, 303, 461, 762
Cfr13I GGNCC 3 cut(s) 50, 500, 509
Cfr42I CCGCGG 1 cut(s) 391
CseI GACGC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 136, 163, 181
CspCI CAANNNNNGTGG 2 cut(s) 571, 606
CviJI RGCY 8 cut(s) 21, 133, 346, 387, 510, 581, 781, 786
CviKI_1 RGCY 8 cut(s) 21, 133, 346, 387, 510, 581, 781, 786
CviQI GTAC 3 cut(s) 136, 163, 181
DinI GGCGCC 1 cut(s) 761
DpnI GATC 3 cut(s) 141, 168, 438
DpnII GATC 3 cut(s) 139, 166, 436
Eam1104I CTCTTC 3 cut(s) 28, 113, 549
EarI CTCTTC 3 cut(s) 28, 113, 549
Eco130I CCWWGG 1 cut(s) 226
Eco47I GGWCC 2 cut(s) 50, 500
EcoO109I RGGNCCY 1 cut(s) 509
EcoRII CCWGG 1 cut(s) 755
EcoT14I CCWWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 761
EheI GGCGCC 1 cut(s) 761
ErhI CCWWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 553
FaqI GGGAC 1 cut(s) 347
FokI GGATG 2 cut(s) 178, 728
FspBI CTAG 1 cut(s) 227
GlaI GCGC 5 cut(s) 285, 287, 302, 460, 761
GsaI CCCAGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 2 cut(s) 304, 763
HaeIII GGCC 2 cut(s) 510, 781
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 269
HhaI GCGC 5 cut(s) 286, 288, 303, 461, 762
Hin1I GRCGYC 2 cut(s) 261, 760
Hin6I GCGC 5 cut(s) 284, 286, 301, 459, 760
HinP1I GCGC 5 cut(s) 284, 286, 301, 459, 760
HinfI GANTC 2 cut(s) 614, 646
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 65, 116
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 152, 490, 547
Hpy8I GTNNAC 1 cut(s) 718
Hpy99I CGWCG 3 cut(s) 212, 263, 275
HpyAV CCTTC 4 cut(s) 80, 106, 452, 757
HpyCH4III ACNGT 4 cut(s) 467, 500, 522, 715
HpyCH4IV ACGT 2 cut(s) 562, 768
HpyCH4V TGCA 6 cut(s) 4, 12, 216, 343, 525, 718
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 300, 393, 531, 572, 578
HpySE526I ACGT 2 cut(s) 562, 768
Hsp92I GRCGYC 2 cut(s) 261, 760
HspAI GCGC 5 cut(s) 284, 286, 301, 459, 760
KasI GGCGCC 1 cut(s) 759
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 3 cut(s) 139, 166, 436
LguI GCTCTTC 2 cut(s) 28, 113
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 5 cut(s) 355, 396, 443, 587, 590
LweI GCATC 2 cut(s) 200, 750
MaeI CTAG 1 cut(s) 227
MaeII ACGT 2 cut(s) 562, 768
MaeIII GTNAC 6 cut(s) 308, 409, 467, 516, 683, 769
MalI GATC 3 cut(s) 141, 168, 438
MbiI CCGCTC 1 cut(s) 298
MboI GATC 3 cut(s) 139, 166, 436
MboII GAAGA 5 cut(s) 15, 100, 357, 566, 716
MhlI GDGCHC 1 cut(s) 720
MluCI AATT 1 cut(s) 689
Mly113I GGCGCC 1 cut(s) 760
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 3 cut(s) 111, 294, 345
MnlI CCTC 7 cut(s) 103, 214, 247, 487, 495, 500, 773
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 58
MspA1I CMGCKG 2 cut(s) 390, 456
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 757
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 1 cut(s) 757
MvnI CGCG 2 cut(s) 286, 390
MwoI GCNNNNNNNGC 6 cut(s) 18, 300, 393, 531, 572, 578
NarI GGCGCC 1 cut(s) 760
NdeII GATC 3 cut(s) 139, 166, 436
NlaIV GGNNCC 2 cut(s) 511, 761
NmuCI GTSAC 3 cut(s) 467, 516, 769
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 181, 678
PaeI GCATGC 1 cut(s) 678
PauI GCGCGC 1 cut(s) 284
PciI ACATGT 1 cut(s) 177
PciSI GCTCTTC 2 cut(s) 28, 113
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 1 cut(s) 537
PfeI GAWTC 1 cut(s) 646
Pfl23II CGTACG 2 cut(s) 135, 162
PflMI CCANNNNNTGG 1 cut(s) 670
PleI GAGTC 1 cut(s) 622
PluTI GGCGCC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 622
PscI ACATGT 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 755
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 1 cut(s) 755
PspLI CGTACG 2 cut(s) 135, 162
PspN4I GGNNCC 2 cut(s) 511, 761
PspPI GGNCC 3 cut(s) 50, 500, 509
PteI GCGCGC 1 cut(s) 284
RsaI GTAC 3 cut(s) 137, 164, 182
RsaNI GTAC 3 cut(s) 136, 163, 181
RseI CAYNNNNRTG 1 cut(s) 58
SacII CCGCGG 1 cut(s) 391
SapI GCTCTTC 2 cut(s) 28, 113
Sau3AI GATC 3 cut(s) 139, 166, 436
Sau96I GGNCC 3 cut(s) 50, 500, 509
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 1 cut(s) 757
SduI GDGCHC 1 cut(s) 720
SetI ASST 5 cut(s) 11, 479, 487, 565, 771
SfaNI GCATC 2 cut(s) 200, 750
SfoI GGCGCC 1 cut(s) 761
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SinI GGWCC 2 cut(s) 50, 500
SmiMI CAYNNNNRTG 1 cut(s) 58
SphI GCATGC 1 cut(s) 678
Sse9I AATT 1 cut(s) 689
SspDI GGCGCC 1 cut(s) 759
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 755
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 4 cut(s) 467, 500, 522, 715
TaiI ACGT 2 cut(s) 565, 771
TaqI TCGA 4 cut(s) 210, 239, 596, 702
TaqII GACCGA 1 cut(s) 266
TasI AATT 1 cut(s) 689
TauI GCSGC 6 cut(s) 36, 301, 390, 456, 537, 575
TfiI GAWTC 1 cut(s) 646
TscAI CASTG 4 cut(s) 430, 525, 574, 778
TseFI GTSAC 3 cut(s) 467, 516, 769
TseI GCWGC 5 cut(s) 343, 384, 456, 575, 578
Tsp45I GTSAC 3 cut(s) 467, 516, 769
TspDTI ATGAA 3 cut(s) 137, 688, 749
TspGWI ACGGA 3 cut(s) 196, 351, 636
TspRI CASTG 4 cut(s) 430, 525, 574, 778
Van91I CCANNNNNTGG 1 cut(s) 670
VneI GTGCAC 1 cut(s) 716
VpaK11BI GGWCC 2 cut(s) 50, 500
XapI RAATTY 1 cut(s) 689
XceI RCATGY 2 cut(s) 181, 678
XmaJI CCTAGG 1 cut(s) 226
XspI CTAG 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.