pycom15g22800

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012268
Physical Location & Seq
Forward (+)
16898592 .. 16900305
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g22800.1

Sequence Viewer

Length: 852 bp
ATGGCTGTTAGCCTGAAGAAAAATAGAATAGAAAAAAAACCATGCATAGGTGCAGTAATGGCTCTTCACATGGCGGCAACATGGTCGGCGGTCCATGTTCGTGCGGTGTCCTTCACCATACCCAATCCAACTCCTCCTTCTCCATGCTCTTCTCCATGCCTAATCACCACAAGCCGTACGATCGATATTCATCACGAAACATCGTACGATCATCATCACATGTACCCGTTCGCATCCCCATCATCCTCCGTCGATTGCACTCTCTCTCTAGGAACTCCCTCGACCCGTTTGACCGACAACGACGTCGTTTCCCATGACAGGCGTGCGCGCAACGGCGAGCGGCGCTCCGGTAACTGCGTTTCCAACTTCTGCTGGGACTTGTTGCAGCCCAATAAGTCATCTCCGTCTTCCCATCACAAGAACGGCAGCCGCGTTGGCAATATCAACGGCGTTACTAACGCTGTCAGTAGTAATAACGATCCCCTTCTCGCTCGCCGCTGCGCTAACTGTGACACCACCTCCACACCTCTCTGGAGAAACGGTCCAAGAGGCCCCAAGTCACTGTGCAATGCCTGCGGCATTCGGTTCAAGAAAGAAGAGAGACGTGCCACTGCGGCAACAGCCAACGGCGGTGGTTCGAGTGTCGTAGGAATGGAGTCTAACGGATACCACCACCACAACTCATGGATTCCGCACTCGCAGACCCAGAAAATGGCGTGCTTTGGTAACGAATTTCGGTTCATCGAGGACGACACCGTGCACCACGAAAACGACATGAACGGCATCCCCTTCCTGTCCTGGCGCCTCAACGTCACTGACAGGCCAAGCCTCGTCCATGATTTCACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

284

Amino Acids

31.21

Weight (kDa)

9.04

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 167 - 201 2.5e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AatII GACGTC 1 cut(s) 306
AccB1I GGYRCC 1 cut(s) 801
AccB7I CCANNNNNTGG 1 cut(s) 712
AccBSI CCGCTC 1 cut(s) 340
AccII CGCG 2 cut(s) 328, 432
AclWI GGATC 1 cut(s) 473
AcsI RAATTY 1 cut(s) 731
AcuI CTGAAG 1 cut(s) 35
AcyI GRCGYC 2 cut(s) 303, 802
AfaI GTAC 3 cut(s) 178, 206, 224
AfiI CCNNNNNNNGG 3 cut(s) 47, 318, 712
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 589
AjiI CACGTC 1 cut(s) 605
AjnI CCWGG 1 cut(s) 797
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 1 cut(s) 595
Alw44I GTGCAC 1 cut(s) 758
AlwI GGATC 1 cut(s) 473
AoxI GGCC 2 cut(s) 550, 821
ApaLI GTGCAC 1 cut(s) 758
ApeKI GCWGC 3 cut(s) 385, 426, 498
ApoI RAATTY 1 cut(s) 731
AspLEI GCGC 5 cut(s) 328, 330, 345, 503, 804
AspS9I GGNCC 3 cut(s) 91, 542, 551
AsuHPI GGTGA 2 cut(s) 106, 157
AvaII GGWCC 2 cut(s) 91, 542
BaeGI GKGCMC 1 cut(s) 762
BanI GGYRCC 1 cut(s) 801
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 3 cut(s) 397, 438, 485
BccI CCATC 2 cut(s) 247, 420
BceAI ACGGC 6 cut(s) 159, 349, 439, 463, 643, 796
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 1 cut(s) 799
BciVI GTATCC 1 cut(s) 659
BcoDI GTCTC 1 cut(s) 595
BfaI CTAG 1 cut(s) 269
BfoI RGCGCY 2 cut(s) 346, 805
BfuI GTATCC 1 cut(s) 659
BglI GCCNNNNNGGC 2 cut(s) 435, 614
BisI GCNGC 9 cut(s) 75, 341, 386, 427, 430, 496, 499, 577, 615
BlsI GCNGC 9 cut(s) 76, 342, 387, 428, 431, 497, 500, 578, 616
Bme1390I CCNGG 1 cut(s) 799
Bme18I GGWCC 2 cut(s) 91, 542
BmgBI CACGTC 1 cut(s) 605
BmgT120I GGNCC 3 cut(s) 91, 542, 551
BmiI GGNNCC 2 cut(s) 553, 803
BmrFI CCNGG 1 cut(s) 799
BmsI GCATC 2 cut(s) 242, 792
BpiI GAAGAC 1 cut(s) 399
BplI GAGNNNNNCTC 2 cut(s) 329, 361
BpmI CTGGAG 1 cut(s) 553
Bsa29I ATCGAT 1 cut(s) 183
BsaBI GATNNNNATC 2 cut(s) 189, 213
BsaHI GRCGYC 2 cut(s) 303, 802
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 4 cut(s) 503, 526, 533, 556
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 318, 712
Bse3DI GCAATG 1 cut(s) 574
Bse8I GATNNNNATC 2 cut(s) 189, 213
BseBI CCWGG 1 cut(s) 799
BseCI ATCGAT 1 cut(s) 183
BseGI GGATG 3 cut(s) 233, 242, 783
BseJI GATNNNNATC 2 cut(s) 189, 213
BseLI CCNNNNNNNGG 3 cut(s) 47, 318, 712
BseMI GCAATG 1 cut(s) 574
BsePI GCGCGC 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 762
BseXI GCAGC 3 cut(s) 397, 438, 485
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 72
Bsh1236I CGCG 2 cut(s) 328, 432
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 2 cut(s) 552, 823
BshNI GGYRCC 1 cut(s) 801
BshVI ATCGAT 1 cut(s) 183
BsiEI CGRYCG 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 762
BsiSI CCGG 1 cut(s) 348
BsiWI CGTACG 2 cut(s) 176, 204
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 3 cut(s) 47, 318, 712
BsmAI GTCTC 1 cut(s) 595
BsmBI CGTCTC 1 cut(s) 595
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 2 cut(s) 552, 823
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 3 cut(s) 180, 208, 478
BspANI GGCC 2 cut(s) 552, 823
BspDI ATCGAT 1 cut(s) 183
BspFNI CGCG 2 cut(s) 328, 432
BspLI GGNNCC 2 cut(s) 553, 803
BspPI GGATC 1 cut(s) 473
BspQI GCTCTTC 2 cut(s) 69, 154
BspT107I GGYRCC 1 cut(s) 801
BsrBI CCGCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 574
BssHII GCGCGC 1 cut(s) 326
BssMI GATC 3 cut(s) 180, 208, 478
BssNI GRCGYC 2 cut(s) 303, 802
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 4 cut(s) 509, 542, 564, 757
Bst6I CTCTTC 3 cut(s) 69, 154, 591
BstACI GRCGYC 2 cut(s) 303, 802
BstAPI GCANNNNNTGC 1 cut(s) 573
BstC8I GCNNGC 6 cut(s) 324, 328, 338, 493, 574, 718
BstF5I GGATG 3 cut(s) 233, 242, 783
BstFNI CGCG 2 cut(s) 328, 432
BstH2I RGCGCY 2 cut(s) 346, 805
BstHHI GCGC 5 cut(s) 328, 330, 345, 503, 804
BstKTI GATC 3 cut(s) 183, 211, 481
BstMAI GTCTC 1 cut(s) 595
BstMBI GATC 3 cut(s) 180, 208, 478
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 6 cut(s) 59, 342, 435, 573, 614, 620
BstNI CCWGG 1 cut(s) 799
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 797
BstSLI GKGCMC 1 cut(s) 762
BstUI CGCG 2 cut(s) 328, 432
BstV1I GCAGC 3 cut(s) 397, 438, 485
BstV2I GAAGAC 1 cut(s) 399
Bsu15I ATCGAT 1 cut(s) 183
BsuI GTATCC 1 cut(s) 659
BsuRI GGCC 2 cut(s) 552, 823
BsuTUI ATCGAT 1 cut(s) 183
BtrI CACGTC 1 cut(s) 605
BtsCI GGATG 3 cut(s) 233, 242, 783
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 3 cut(s) 560, 609, 813
Cac8I GCNNGC 6 cut(s) 324, 328, 338, 493, 574, 718
CfoI GCGC 5 cut(s) 328, 330, 345, 503, 804
Cfr13I GGNCC 3 cut(s) 91, 542, 551
ClaI ATCGAT 1 cut(s) 183
Csp6I GTAC 3 cut(s) 177, 205, 223
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviQI GTAC 3 cut(s) 177, 205, 223
DinI GGCGCC 1 cut(s) 803
DpnI GATC 3 cut(s) 182, 210, 480
DpnII GATC 3 cut(s) 180, 208, 478
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 3 cut(s) 69, 154, 591
EarI CTCTTC 3 cut(s) 69, 154, 591
Eco47I GGWCC 2 cut(s) 91, 542
Eco57I CTGAAG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 551
EcoRII CCWGG 1 cut(s) 797
EcoT22I ATGCAT 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 803
EheI GGCGCC 1 cut(s) 803
Esp3I CGTCTC 1 cut(s) 595
FaqI GGGAC 1 cut(s) 389
Fnu4HI GCNGC 9 cut(s) 75, 341, 386, 427, 430, 496, 499, 577, 615
FokI GGATG 3 cut(s) 220, 229, 770
Fsp4HI GCNGC 9 cut(s) 75, 341, 386, 427, 430, 496, 499, 577, 615
FspBI CTAG 1 cut(s) 269
GlaI GCGC 5 cut(s) 327, 329, 344, 502, 803
GluI GCNGC 9 cut(s) 75, 341, 386, 427, 430, 496, 499, 577, 615
GsaI CCCAGC 1 cut(s) 376
GsuI CTGGAG 1 cut(s) 553
HaeII RGCGCY 2 cut(s) 346, 805
HaeIII GGCC 2 cut(s) 552, 823
HapII CCGG 1 cut(s) 348
HhaI GCGC 5 cut(s) 328, 330, 345, 503, 804
Hin1I GRCGYC 2 cut(s) 303, 802
Hin6I GCGC 5 cut(s) 326, 328, 343, 501, 802
HinP1I GCGC 5 cut(s) 326, 328, 343, 501, 802
HinfI GANTC 2 cut(s) 656, 688
HpaII CCGG 1 cut(s) 348
HphI GGTGA 2 cut(s) 106, 157
Hpy166II GTNNAC 1 cut(s) 760
Hpy188III TCNNGA 3 cut(s) 194, 532, 589
Hpy8I GTNNAC 1 cut(s) 760
Hpy99I CGWCG 3 cut(s) 254, 305, 308
HpyAV CCTTC 4 cut(s) 121, 147, 494, 799
HpyCH4III ACNGT 4 cut(s) 509, 542, 564, 757
HpyCH4IV ACGT 3 cut(s) 303, 604, 810
HpyCH4V TGCA 6 cut(s) 45, 53, 258, 385, 567, 760
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 342, 435, 573, 614, 620
HpySE526I ACGT 3 cut(s) 303, 604, 810
Hsp92I GRCGYC 2 cut(s) 303, 802
HspAI GCGC 5 cut(s) 326, 328, 343, 501, 802
KasI GGCGCC 1 cut(s) 801
Kzo9I GATC 3 cut(s) 180, 208, 478
LguI GCTCTTC 2 cut(s) 69, 154
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 3 cut(s) 397, 438, 485
LweI GCATC 2 cut(s) 242, 792
MaeI CTAG 1 cut(s) 269
MaeII ACGT 3 cut(s) 303, 604, 810
MaeIII GTNAC 6 cut(s) 350, 451, 509, 558, 725, 811
MalI GATC 3 cut(s) 182, 210, 480
MbiI CCGCTC 1 cut(s) 340
MboI GATC 3 cut(s) 180, 208, 478
MboII GAAGA 5 cut(s) 28, 56, 141, 399, 608
MhlI GDGCHC 1 cut(s) 762
MluCI AATT 1 cut(s) 731
Mly113I GGCGCC 1 cut(s) 802
MlyI GAGTC 1 cut(s) 665
MmeI TCCRAC 2 cut(s) 152, 387
MnlI CCTC 9 cut(s) 144, 256, 289, 529, 537, 542, 739, 815, 839
Mph1103I ATGCAT 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 799
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 1 cut(s) 799
MvnI CGCG 2 cut(s) 328, 432
MwoI GCNNNNNNNGC 6 cut(s) 59, 342, 435, 573, 614, 620
NarI GGCGCC 1 cut(s) 802
NdeII GATC 3 cut(s) 180, 208, 478
NlaIV GGNNCC 2 cut(s) 553, 803
NmuCI GTSAC 3 cut(s) 509, 558, 811
NsiI ATGCAT 1 cut(s) 47
NspI RCATGY 1 cut(s) 223
PauI GCGCGC 1 cut(s) 326
PciI ACATGT 1 cut(s) 219
PciSI GCTCTTC 2 cut(s) 69, 154
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PctI GAATGC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 688
Pfl23II CGTACG 2 cut(s) 176, 204
PflMI CCANNNNNTGG 1 cut(s) 712
PkrI GCNGC 9 cut(s) 76, 342, 387, 428, 431, 497, 500, 578, 616
Ple19I CGATCG 1 cut(s) 183
PleI GAGTC 1 cut(s) 664
PluTI GGCGCC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 664
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 797
PspFI CCCAGC 1 cut(s) 372
PspGI CCWGG 1 cut(s) 797
PspLI CGTACG 2 cut(s) 176, 204
PspN4I GGNNCC 2 cut(s) 553, 803
PspPI GGNCC 3 cut(s) 91, 542, 551
PteI GCGCGC 1 cut(s) 326
PvuI CGATCG 1 cut(s) 183
RsaI GTAC 3 cut(s) 178, 206, 224
RsaNI GTAC 3 cut(s) 177, 205, 223
RseI CAYNNNNRTG 1 cut(s) 99
SapI GCTCTTC 2 cut(s) 69, 154
SatI GCNGC 9 cut(s) 75, 341, 386, 427, 430, 496, 499, 577, 615
Sau3AI GATC 3 cut(s) 180, 208, 478
Sau96I GGNCC 3 cut(s) 91, 542, 551
SchI GAGTC 1 cut(s) 665
ScrFI CCNGG 1 cut(s) 799
SduI GDGCHC 1 cut(s) 762
SetI ASST 6 cut(s) 52, 306, 521, 529, 607, 813
SfaNI GCATC 2 cut(s) 242, 792
SfoI GGCGCC 1 cut(s) 803
SinI GGWCC 2 cut(s) 91, 542
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 1 cut(s) 731
SspDI GGCGCC 1 cut(s) 801
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 797
TaaI ACNGT 4 cut(s) 509, 542, 564, 757
TaiI ACGT 3 cut(s) 306, 607, 813
TaqI TCGA 5 cut(s) 183, 252, 281, 638, 744
TaqII GACCGA 1 cut(s) 308
TasI AATT 1 cut(s) 731
TauI GCSGC 6 cut(s) 77, 343, 432, 498, 579, 617
TfiI GAWTC 1 cut(s) 688
TscAI CASTG 3 cut(s) 567, 616, 820
TseFI GTSAC 3 cut(s) 509, 558, 811
TseI GCWGC 3 cut(s) 385, 426, 498
Tsp45I GTSAC 3 cut(s) 509, 558, 811
TspDTI ATGAA 3 cut(s) 179, 730, 791
TspGWI ACGGA 3 cut(s) 238, 393, 678
TspRI CASTG 3 cut(s) 567, 616, 820
Van91I CCANNNNNTGG 1 cut(s) 712
VneI GTGCAC 1 cut(s) 758
VpaK11BI GGWCC 2 cut(s) 91, 542
XapI RAATTY 1 cut(s) 731
XceI RCATGY 1 cut(s) 223
XspI CTAG 1 cut(s) 269
ZraI GACGTC 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.