FvH4_1g13230

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012268
Physical Location & Seq
Forward (+)
7269725 .. 7271345
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13230.t1

Sequence Viewer

Length: 762 bp
ATGCAGAGGTGCAGTAGTACTAGCTCCCAGGGCCACGTCTTGGGCTCATGCTCGTGCGGCTTGTTCCACACCCAGACCAACTCCTCCTTCTCCATGCTCTTCTCCATGCCCAACAATCACCACAAGCCCTACGATCAATACGAGCCGTCGGATCACCACCACATGTACTCCTTCGCCTCCCCTTCTTCCGTCGACTGCACTCTCTCCCTAGGCACTCCCTCCACTCGTCTCACGTCTGATGAAGGAAACGATGACAAGCGCGGCGGACGCCACGAGCGGAGGTCCGTTTCGAACTTCTGCTGGGACCTTTTACAACCAAAACATGCCTCGTCAGCGCCGAAGAACGGGAGCGGCAACCGCGGCGGCGGTGGGAATGGAGATTCGCTTCTGGCTCGCCGCTGCGCTAACTGCGACACCACCTCGACACCGCTCTGGCGAAACGGCCCACGAGGCCCAAAGTCGCTTTGCAATGCTTGTGGAATCCGGTTCAAGAAGGAAGAGAGACGAGCCACCGCCGCAGCCGCCACGTCAGCCAACGGCGCAACATCGTCCGGCAGCCATTCGTGGATGAACAACTCCCAGGCTCAGAAAATGCACTGCTACGCTCCGTCCATGAACGGTAACGAGTTCCGGTTCATGGAAGATCACGACATGATGACGTCTCACGAAACGGCCGACGCCGCCGCAGCCGGCATTCCCTTCCTCTCGTGGCGCCTCAACGTCACAGACAGACCAAGCCTCGTCCATGACTTTACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

254

Amino Acids

27.62

Weight (kDa)

8.56

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 134 - 168 2.1e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 662
AccB1I GGYRCC 1 cut(s) 711
AccB7I CCANNNNNTGG 1 cut(s) 40
AccBSI CCGCTC 3 cut(s) 277, 351, 430
AccI GTMKAC 1 cut(s) 192
AccII CGCG 2 cut(s) 261, 360
AclWI GGATC 1 cut(s) 159
AcoI YGGCCR 1 cut(s) 672
AcyI GRCGYC 4 cut(s) 268, 659, 678, 712
AfaI GTAC 2 cut(s) 19, 167
AfiI CCNNNNNNNGG 3 cut(s) 40, 344, 637
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 1 cut(s) 490
AjiI CACGTC 3 cut(s) 37, 234, 528
AjnI CCWGG 2 cut(s) 27, 579
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 1 cut(s) 24
AluI AGCT 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 233, 496, 666
AlwI GGATC 1 cut(s) 159
AoxI GGCC 4 cut(s) 31, 442, 451, 672
ApeKI GCWGC 4 cut(s) 399, 518, 555, 686
AspA2I CCTAGG 1 cut(s) 208
AspLEI GCGC 5 cut(s) 261, 337, 404, 542, 714
AspS9I GGNCC 5 cut(s) 31, 282, 304, 443, 452
AsuHPI GGTGA 2 cut(s) 110, 146
AsuII TTCGAA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 282, 304
AvrII CCTAGG 1 cut(s) 208
BanI GGYRCC 1 cut(s) 711
BanII GRGCYC 1 cut(s) 47
BauI CACGAG 4 cut(s) 52, 272, 447, 706
BbvI GCAGC 4 cut(s) 386, 530, 567, 698
BceAI ACGGC 4 cut(s) 130, 457, 553, 687
BciT130I CCWGG 2 cut(s) 29, 581
BcoDI GTCTC 3 cut(s) 233, 496, 666
BfaI CTAG 2 cut(s) 21, 209
BfoI RGCGCY 2 cut(s) 338, 715
BglI GCCNNNNNGGC 1 cut(s) 450
BlnI CCTAGG 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 29, 581
Bme18I GGWCC 2 cut(s) 282, 304
BmgBI CACGTC 3 cut(s) 37, 234, 528
BmgT120I GGNCC 5 cut(s) 31, 282, 304, 443, 452
BmiI GGNNCC 2 cut(s) 305, 713
BmrFI CCNGG 2 cut(s) 29, 581
Bpu14I TTCGAA 1 cut(s) 290
BsaHI GRCGYC 4 cut(s) 268, 659, 678, 712
BsaJI CCNNGG 5 cut(s) 27, 28, 208, 358, 579
BsaWI WCCGGW 2 cut(s) 483, 630
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 344, 637
Bse118I RCCGGY 1 cut(s) 689
Bse3DI GCAATG 1 cut(s) 475
BseBI CCWGG 2 cut(s) 29, 581
BseDI CCNNGG 5 cut(s) 27, 28, 208, 358, 579
BseGI GGATG 1 cut(s) 573
BseLI CCNNNNNNNGG 3 cut(s) 40, 344, 637
BseMI GCAATG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 599
BseRI GAGGAG 1 cut(s) 73
BseX3I CGGCCG 1 cut(s) 672
BseXI GCAGC 4 cut(s) 386, 530, 567, 698
BseYI CCCAGC 1 cut(s) 300
BsgI GTGCAG 2 cut(s) 31, 181
Bsh1236I CGCG 2 cut(s) 261, 360
Bsh1285I CGRYCG 1 cut(s) 675
BshFI GGCC 4 cut(s) 33, 444, 453, 674
BshNI GGYRCC 1 cut(s) 711
BsiEI CGRYCG 1 cut(s) 675
BsiSI CCGG 4 cut(s) 484, 552, 631, 690
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 3 cut(s) 40, 344, 637
BsmAI GTCTC 3 cut(s) 233, 496, 666
BsmBI CGTCTC 3 cut(s) 233, 496, 666
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 4 cut(s) 33, 444, 453, 674
Bsp119I TTCGAA 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 3 cut(s) 133, 151, 643
BspANI GGCC 4 cut(s) 33, 444, 453, 674
BspCNI CTCAG 1 cut(s) 598
BspFNI CGCG 2 cut(s) 261, 360
BspLI GGNNCC 2 cut(s) 305, 713
BspPI GGATC 1 cut(s) 159
BspQI GCTCTTC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 1 cut(s) 711
BsrBI CCGCTC 3 cut(s) 277, 351, 430
BsrDI GCAATG 1 cut(s) 475
BsrFI RCCGGY 1 cut(s) 689
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 5 cut(s) 27, 28, 208, 358, 579
BssMI GATC 3 cut(s) 133, 151, 643
BssNI GRCGYC 4 cut(s) 268, 659, 678, 712
BssSI CACGAG 4 cut(s) 52, 272, 447, 706
BssT1I CCWWGG 1 cut(s) 208
Bst2BI CACGAG 4 cut(s) 52, 272, 447, 706
Bst2UI CCWGG 2 cut(s) 29, 581
Bst4CI ACNGT 1 cut(s) 620
Bst6I CTCTTC 2 cut(s) 104, 492
BstACI GRCGYC 4 cut(s) 268, 659, 678, 712
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 394, 691
BstDEI CTNAG 1 cut(s) 585
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 573
BstFNI CGCG 2 cut(s) 261, 360
BstH2I RGCGCY 2 cut(s) 338, 715
BstHHI GCGC 5 cut(s) 261, 337, 404, 542, 714
BstKTI GATC 3 cut(s) 136, 154, 646
BstMAI GTCTC 3 cut(s) 233, 496, 666
BstMBI GATC 3 cut(s) 133, 151, 643
BstMCI CGRYCG 1 cut(s) 675
BstNI CCWGG 2 cut(s) 29, 581
BstNSI RCATGY 2 cut(s) 166, 326
BstSCI CCNGG 2 cut(s) 27, 579
BstUI CGCG 2 cut(s) 261, 360
BstV1I GCAGC 4 cut(s) 386, 530, 567, 698
BstZI CGGCCG 1 cut(s) 672
BsuRI GGCC 4 cut(s) 33, 444, 453, 674
BtgI CCRYGG 1 cut(s) 358
BtrI CACGTC 3 cut(s) 37, 234, 528
BtsCI GGATG 1 cut(s) 573
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 394, 691
CfoI GCGC 5 cut(s) 261, 337, 404, 542, 714
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 5 cut(s) 31, 282, 304, 443, 452
Cfr42I CCGCGG 1 cut(s) 361
CseI GACGC 2 cut(s) 276, 686
Csp6I GTAC 2 cut(s) 18, 166
CspCI CAANNNNNGTGG 2 cut(s) 457, 492
CviAII CATG 9 cut(s) 48, 94, 106, 163, 323, 613, 637, 652, 746
CviQI GTAC 2 cut(s) 18, 166
DdeI CTNAG 1 cut(s) 585
DinI GGCGCC 1 cut(s) 713
DpnI GATC 3 cut(s) 135, 153, 645
DpnII GATC 3 cut(s) 133, 151, 643
EaeI YGGCCR 1 cut(s) 672
EagI CGGCCG 1 cut(s) 672
Eam1104I CTCTTC 2 cut(s) 104, 492
EarI CTCTTC 2 cut(s) 104, 492
EciI GGCGGA 1 cut(s) 279
EclXI CGGCCG 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 282, 304
Eco52I CGGCCG 1 cut(s) 672
EcoO109I RGGNCCY 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 27, 579
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 713
EheI GGCGCC 1 cut(s) 713
ErhI CCWWGG 1 cut(s) 208
Esp3I CGTCTC 3 cut(s) 233, 496, 666
FaeI CATG 9 cut(s) 51, 97, 109, 166, 326, 616, 640, 655, 749
FaiI YATR 9 cut(s) 49, 95, 107, 164, 324, 614, 638, 653, 747
FaqI GGGAC 1 cut(s) 317
FatI CATG 9 cut(s) 47, 93, 105, 162, 322, 612, 636, 651, 745
FblI GTMKAC 1 cut(s) 192
FokI GGATG 1 cut(s) 580
FriOI GRGCYC 1 cut(s) 47
FspBI CTAG 2 cut(s) 21, 209
GlaI GCGC 5 cut(s) 260, 336, 403, 541, 713
GsaI CCCAGC 1 cut(s) 304
HaeII RGCGCY 2 cut(s) 338, 715
HaeIII GGCC 4 cut(s) 33, 444, 453, 674
HapII CCGG 4 cut(s) 484, 552, 631, 690
HgaI GACGC 2 cut(s) 276, 686
HhaI GCGC 5 cut(s) 261, 337, 404, 542, 714
Hin1I GRCGYC 4 cut(s) 268, 659, 678, 712
Hin1II CATG 9 cut(s) 51, 97, 109, 166, 326, 616, 640, 655, 749
Hin6I GCGC 5 cut(s) 259, 335, 402, 540, 712
HinP1I GCGC 5 cut(s) 259, 335, 402, 540, 712
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 2 cut(s) 380, 480
HpaII CCGG 4 cut(s) 484, 552, 631, 690
HphI GGTGA 2 cut(s) 110, 146
Hpy166II GTNNAC 1 cut(s) 193
Hpy188I TCNGA 3 cut(s) 151, 238, 588
Hpy188III TCNNGA 3 cut(s) 490, 647, 665
Hpy8I GTNNAC 1 cut(s) 193
Hpy99I CGWCG 3 cut(s) 151, 194, 680
HpyAV CCTTC 6 cut(s) 97, 181, 192, 236, 487, 709
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4IV ACGT 5 cut(s) 36, 233, 527, 659, 720
HpyCH4V TGCA 5 cut(s) 4, 12, 198, 468, 595
HpyF3I CTNAG 1 cut(s) 585
HpySE526I ACGT 5 cut(s) 36, 233, 527, 659, 720
Hsp92I GRCGYC 4 cut(s) 268, 659, 678, 712
Hsp92II CATG 9 cut(s) 51, 97, 109, 166, 326, 616, 640, 655, 749
HspAI GCGC 5 cut(s) 259, 335, 402, 540, 712
KasI GGCGCC 1 cut(s) 711
KroI GCCGGC 1 cut(s) 689
KroNI GCCGGC 1 cut(s) 691
KspI CCGCGG 1 cut(s) 361
Kzo9I GATC 3 cut(s) 133, 151, 643
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 3 cut(s) 29, 348, 610
Lsp1109I GCAGC 4 cut(s) 386, 530, 567, 698
MaeI CTAG 2 cut(s) 21, 209
MaeII ACGT 5 cut(s) 36, 233, 527, 659, 720
MaeIII GTNAC 2 cut(s) 620, 721
MalI GATC 3 cut(s) 135, 153, 645
MbiI CCGCTC 3 cut(s) 277, 351, 430
MboI GATC 3 cut(s) 133, 151, 643
MboII GAAGA 5 cut(s) 91, 177, 352, 509, 653
MhlI GDGCHC 1 cut(s) 47
Mly113I GGCGCC 1 cut(s) 712
MmeI TCCRAC 1 cut(s) 129
MroNI GCCGGC 1 cut(s) 689
MslI CAYNNNNRTG 1 cut(s) 52
MspA1I CMGCKG 2 cut(s) 360, 399
MspI CCGG 4 cut(s) 484, 552, 631, 690
MspR9I CCNGG 2 cut(s) 29, 581
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 2 cut(s) 29, 581
MvnI CGCG 2 cut(s) 261, 360
NaeI GCCGGC 1 cut(s) 691
NarI GGCGCC 1 cut(s) 712
NdeII GATC 3 cut(s) 133, 151, 643
NgoMIV GCCGGC 1 cut(s) 689
NlaIII CATG 9 cut(s) 51, 97, 109, 166, 326, 616, 640, 655, 749
NlaIV GGNNCC 2 cut(s) 305, 713
NmuCI GTSAC 1 cut(s) 721
NspI RCATGY 2 cut(s) 166, 326
NspV TTCGAA 1 cut(s) 290
PasI CCCWGGG 1 cut(s) 28
PciI ACATGT 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 3 cut(s) 138, 335, 672
PctI GAATGC 1 cut(s) 693
PdiI GCCGGC 1 cut(s) 691
PfeI GAWTC 2 cut(s) 380, 480
PflMI CCANNNNNTGG 1 cut(s) 40
PluTI GGCGCC 1 cut(s) 715
PpuMI RGGWCCY 1 cut(s) 304
PscI ACATGT 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 304
Psp6I CCWGG 2 cut(s) 27, 579
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 2 cut(s) 27, 579
PspN4I GGNNCC 2 cut(s) 305, 713
PspPI GGNCC 5 cut(s) 31, 282, 304, 443, 452
PspPPI RGGWCCY 1 cut(s) 304
RsaI GTAC 2 cut(s) 19, 167
RsaNI GTAC 2 cut(s) 18, 166
RseI CAYNNNNRTG 1 cut(s) 52
SacII CCGCGG 1 cut(s) 361
SalI GTCGAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 104
Sau3AI GATC 3 cut(s) 133, 151, 643
Sau96I GGNCC 5 cut(s) 31, 282, 304, 443, 452
ScaI AGTACT 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 29, 581
SduI GDGCHC 1 cut(s) 47
SfiI GGCCNNNNNGGCC 1 cut(s) 450
SfoI GGCGCC 1 cut(s) 713
Sfr303I CCGCGG 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 290
SgrBI CCGCGG 1 cut(s) 361
SinI GGWCC 2 cut(s) 282, 304
SmiMI CAYNNNNRTG 1 cut(s) 52
SspDI GGCGCC 1 cut(s) 711
SspMI CTAG 2 cut(s) 21, 209
StyD4I CCNGG 2 cut(s) 27, 579
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 620
TaiI ACGT 5 cut(s) 39, 236, 530, 662, 723
TaqI TCGA 3 cut(s) 192, 290, 422
TatI WGTACW 2 cut(s) 17, 165
TfiI GAWTC 2 cut(s) 380, 480
TscAI CASTG 1 cut(s) 602
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 4 cut(s) 399, 518, 555, 686
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 4 cut(s) 255, 584, 625, 629
TspGWI ACGGA 3 cut(s) 178, 274, 597
TspRI CASTG 1 cut(s) 602
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 282, 304
XceI RCATGY 2 cut(s) 166, 326
XmaJI CCTAGG 1 cut(s) 208
XmiI GTMKAC 1 cut(s) 192
XspI CTAG 2 cut(s) 21, 209
ZraI GACGTC 1 cut(s) 660
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.