MD02G1146800.v1.1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012268
Physical Location & Seq
Forward (+)
12141534 .. 12143185
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1146800.v1.1.491

Sequence Viewer

Length: 810 bp
ATGCATAGGTGCAGTGGTGGCTCTTCACATGGCGGCAACATGGTCGGCGGTCCATGCTCGTGCGGTGTCCTTCACCACACCCAGTCCAACTCCTCCTTCTCCACGCTGTTCTCCATGCCCAATCATCACAAGCCGTACGATCATATTCATCACGAAACATCGTACGATCATCATCACATGTACCCGTTCGCATCCCCATCTTCCTCCGTTGATTGCACTCTCTCTCTAGGAACTCCCTCCACCCGTTTGACCGACAACGACGTCGTTTCCGACGACAGGCATAGCCTCAACGGCGAGCGGCGCTCCGGTAACTGCGTTTCTAATTTCTGCTGGGACTTGTTGCAGCCCAATAAGTCATCGCCGTCTTCCCATCACAAGAACAGCAACCGCGGTGGCAATATCAACGGCGTGACTAACGGTGGCAGCGGTAATAACGACCCCCTCCTCGCTCGCCGCTGCGCTAACTGTGACACCACCTCCACCCCGCTCTGGAGAAACGGTCCGAGAGGCCCCAAGTCACTATGCAATGCCTGTGGAATTCGGTTCAAGAAAGAAGAGAGACGTGCCACGGCGGCGGCTGCCAGCGGCGGTGGTTCGAGTGTCATAGGAATGGAGTCTAACGGATACCAGCACCATAACTCATGGATTCCACACTCACAGACCCAGAAAATGCCATGCTTTGGTAACGAGTTTCGGTTCATGGAGGACGACACTGCACACCACGAAAACGACATTAACGGCATCCCATTCCTTTCTTGGCGCCTCAACGTCACTGACAGACCAAGCCTCGTCCATGACTTCACAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

270

Amino Acids

29.49

Weight (kDa)

7.69

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 153 - 187 2.3e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 260
AatII GACGTC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 759
AccB7I CCANNNNNTGG 1 cut(s) 680
AccBSI CCGCTC 2 cut(s) 298, 487
AccII CGCG 1 cut(s) 390
AcsI RAATTY 1 cut(s) 537
AcyI GRCGYC 2 cut(s) 261, 760
AfaI GTAC 3 cut(s) 137, 164, 182
AfiI CCNNNNNNNGG 3 cut(s) 276, 489, 680
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 547
AjiI CACGTC 1 cut(s) 563
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
Alw26I GTCTC 1 cut(s) 553
AoxI GGCC 1 cut(s) 508
ApeKI GCWGC 4 cut(s) 343, 423, 456, 578
ApoI RAATTY 1 cut(s) 537
AspLEI GCGC 3 cut(s) 303, 461, 762
AspS9I GGNCC 3 cut(s) 50, 500, 509
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 2 cut(s) 50, 500
BanI GGYRCC 1 cut(s) 759
BauI CACGAG 1 cut(s) 58
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 4 cut(s) 355, 435, 443, 565
BccI CCATC 2 cut(s) 205, 378
BceAI ACGGC 6 cut(s) 118, 307, 346, 421, 585, 754
BcgI CGANNNNNNTGC 2 cut(s) 25, 59
BciVI GTATCC 1 cut(s) 617
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 1 cut(s) 227
BfoI RGCGCY 2 cut(s) 304, 763
BfuI GTATCC 1 cut(s) 617
BglI GCCNNNNNGGC 2 cut(s) 291, 572
Bme18I GGWCC 2 cut(s) 50, 500
BmgBI CACGTC 1 cut(s) 563
BmgT120I GGNCC 3 cut(s) 50, 500, 509
BmiI GGNNCC 2 cut(s) 511, 761
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 2 cut(s) 200, 750
BmuI ACTGGG 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 1 cut(s) 511
BsaBI GATNNNNATC 1 cut(s) 171
BsaHI GRCGYC 2 cut(s) 261, 760
BsaJI CCNNGG 2 cut(s) 388, 567
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 4 cut(s) 461, 484, 491, 514
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 489, 680
Bse1I ACTGG 1 cut(s) 82
Bse3DI GCAATG 1 cut(s) 532
Bse8I GATNNNNATC 1 cut(s) 171
BseDI CCNNGG 2 cut(s) 388, 567
BseGI GGATG 2 cut(s) 191, 741
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 276, 489, 680
BseMI GCAATG 1 cut(s) 532
BseNI ACTGG 1 cut(s) 82
BseRI GAGGAG 2 cut(s) 82, 434
BseXI GCAGC 4 cut(s) 355, 435, 443, 565
BseYI CCCAGC 1 cut(s) 330
BsgI GTGCAG 2 cut(s) 31, 699
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 510
BshNI GGYRCC 1 cut(s) 759
BsiSI CCGG 1 cut(s) 306
BsiWI CGTACG 2 cut(s) 135, 162
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 3 cut(s) 276, 489, 680
BsmAI GTCTC 1 cut(s) 553
BsmBI CGTCTC 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 347
BsnI GGCC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 139, 166
BspANI GGCC 1 cut(s) 510
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 2 cut(s) 511, 761
BspQI GCTCTTC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 759
BsrBI CCGCTC 2 cut(s) 298, 487
BsrDI GCAATG 1 cut(s) 532
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 2 cut(s) 388, 567
BssMI GATC 2 cut(s) 139, 166
BssNI GRCGYC 2 cut(s) 261, 760
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 419, 467, 500
Bst6I CTCTTC 2 cut(s) 28, 549
BstACI GRCGYC 2 cut(s) 261, 760
BstC8I GCNNGC 3 cut(s) 296, 451, 583
BstDSI CCRYGG 2 cut(s) 388, 567
BstF5I GGATG 2 cut(s) 191, 741
BstFNI CGCG 1 cut(s) 390
BstH2I RGCGCY 2 cut(s) 304, 763
BstHHI GCGC 3 cut(s) 303, 461, 762
BstKTI GATC 2 cut(s) 142, 169
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 2 cut(s) 139, 166
BstMWI GCNNNNNNNGC 6 cut(s) 18, 54, 291, 300, 572, 578
BstNSI RCATGY 1 cut(s) 181
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 4 cut(s) 355, 435, 443, 565
BstV2I GAAGAC 1 cut(s) 357
BsuI GTATCC 1 cut(s) 617
BsuRI GGCC 1 cut(s) 510
BtgI CCRYGG 2 cut(s) 388, 567
BtgZI GCGATG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 563
BtsCI GGATG 2 cut(s) 191, 741
BtsI GCAGTG 2 cut(s) 19, 711
BtsIMutI CAGTG 3 cut(s) 19, 711, 771
Cac8I GCNNGC 3 cut(s) 296, 451, 583
CfoI GCGC 3 cut(s) 303, 461, 762
Cfr13I GGNCC 3 cut(s) 50, 500, 509
Cfr42I CCGCGG 1 cut(s) 391
CpoI CGGWCCG 1 cut(s) 500
Csp6I GTAC 3 cut(s) 136, 163, 181
CspCI CAANNNNNGTGG 4 cut(s) 373, 408, 514, 549
CspI CGGWCCG 1 cut(s) 500
CviAII CATG 9 cut(s) 29, 40, 54, 115, 178, 642, 675, 700, 794
CviJI RGCY 7 cut(s) 21, 133, 285, 346, 510, 578, 786
CviKI_1 RGCY 7 cut(s) 21, 133, 285, 346, 510, 578, 786
CviQI GTAC 3 cut(s) 136, 163, 181
DinI GGCGCC 1 cut(s) 761
DpnI GATC 2 cut(s) 141, 168
DpnII GATC 2 cut(s) 139, 166
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 28, 549
EarI CTCTTC 2 cut(s) 28, 549
Eco47I GGWCC 2 cut(s) 50, 500
EcoO109I RGGNCCY 1 cut(s) 509
EcoRI GAATTC 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 6
EgeI GGCGCC 1 cut(s) 761
EheI GGCGCC 1 cut(s) 761
Esp3I CGTCTC 1 cut(s) 553
FaeI CATG 9 cut(s) 32, 43, 57, 118, 181, 645, 678, 703, 797
FaqI GGGAC 1 cut(s) 347
FatI CATG 9 cut(s) 28, 39, 53, 114, 177, 641, 674, 699, 793
FauI CCCGC 1 cut(s) 492
FokI GGATG 2 cut(s) 178, 728
FspBI CTAG 1 cut(s) 227
GlaI GCGC 3 cut(s) 302, 460, 761
GsaI CCCAGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 2 cut(s) 304, 763
HaeIII GGCC 1 cut(s) 510
HapII CCGG 1 cut(s) 306
HhaI GCGC 3 cut(s) 303, 461, 762
Hin1I GRCGYC 2 cut(s) 261, 760
Hin1II CATG 9 cut(s) 32, 43, 57, 118, 181, 645, 678, 703, 797
Hin6I GCGC 3 cut(s) 301, 459, 760
HinP1I GCGC 3 cut(s) 301, 459, 760
HinfI GANTC 2 cut(s) 614, 646
HpaII CCGG 1 cut(s) 306
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 2 cut(s) 271, 504
Hpy188III TCNNGA 3 cut(s) 152, 490, 547
Hpy99I CGWCG 3 cut(s) 263, 266, 275
HpyAV CCTTC 2 cut(s) 80, 106
HpyCH4III ACNGT 3 cut(s) 419, 467, 500
HpyCH4IV ACGT 3 cut(s) 261, 562, 768
HpyCH4V TGCA 6 cut(s) 4, 12, 216, 343, 525, 716
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 54, 291, 300, 572, 578
HpySE526I ACGT 3 cut(s) 261, 562, 768
Hsp92I GRCGYC 2 cut(s) 261, 760
Hsp92II CATG 9 cut(s) 32, 43, 57, 118, 181, 645, 678, 703, 797
HspAI GCGC 3 cut(s) 301, 459, 760
KasI GGCGCC 1 cut(s) 759
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 2 cut(s) 139, 166
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 9 cut(s) 95, 262, 316, 319, 475, 544, 595, 641, 677
Lsp1109I GCAGC 4 cut(s) 355, 435, 443, 565
LweI GCATC 2 cut(s) 200, 750
MaeI CTAG 1 cut(s) 227
MaeII ACGT 3 cut(s) 261, 562, 768
MaeIII GTNAC 6 cut(s) 308, 409, 467, 516, 683, 769
MalI GATC 2 cut(s) 141, 168
MbiI CCGCTC 2 cut(s) 298, 487
MboI GATC 2 cut(s) 139, 166
MboII GAAGA 4 cut(s) 15, 192, 357, 566
MluCI AATT 2 cut(s) 322, 537
Mly113I GGCGCC 1 cut(s) 760
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 2 cut(s) 111, 294
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 735
MslI CAYNNNNRTG 2 cut(s) 58, 608
MspA1I CMGCKG 4 cut(s) 390, 426, 456, 585
MspI CCGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 6 cut(s) 18, 54, 291, 300, 572, 578
NarI GGCGCC 1 cut(s) 760
NdeII GATC 2 cut(s) 139, 166
NlaIII CATG 9 cut(s) 32, 43, 57, 118, 181, 645, 678, 703, 797
NlaIV GGNNCC 2 cut(s) 511, 761
NmuCI GTSAC 4 cut(s) 409, 467, 516, 769
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 181
PciI ACATGT 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 270
PfeI GAWTC 1 cut(s) 646
Pfl23II CGTACG 2 cut(s) 135, 162
PflMI CCANNNNNTGG 1 cut(s) 680
PleI GAGTC 1 cut(s) 622
PluTI GGCGCC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 622
PscI ACATGT 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 330
PspLI CGTACG 2 cut(s) 135, 162
PspN4I GGNNCC 2 cut(s) 511, 761
PspPI GGNCC 3 cut(s) 50, 500, 509
RsaI GTAC 3 cut(s) 137, 164, 182
RsaNI GTAC 3 cut(s) 136, 163, 181
RseI CAYNNNNRTG 2 cut(s) 58, 608
Rsr2I CGGWCCG 1 cut(s) 500
RsrII CGGWCCG 1 cut(s) 500
SacII CCGCGG 1 cut(s) 391
SapI GCTCTTC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 735
Sau3AI GATC 2 cut(s) 139, 166
Sau96I GGNCC 3 cut(s) 50, 500, 509
SchI GAGTC 1 cut(s) 623
SetI ASST 5 cut(s) 11, 264, 479, 565, 771
SfaNI GCATC 2 cut(s) 200, 750
SfoI GGCGCC 1 cut(s) 761
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SinI GGWCC 2 cut(s) 50, 500
SmiMI CAYNNNNRTG 2 cut(s) 58, 608
Sse9I AATT 2 cut(s) 322, 537
SspDI GGCGCC 1 cut(s) 759
SspMI CTAG 1 cut(s) 227
TaaI ACNGT 3 cut(s) 419, 467, 500
TaiI ACGT 3 cut(s) 264, 565, 771
TaqI TCGA 1 cut(s) 596
TaqII GACCGA 1 cut(s) 266
TasI AATT 2 cut(s) 322, 537
TauI GCSGC 6 cut(s) 36, 301, 456, 575, 578, 588
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 1 cut(s) 735
Tru9I TTAA 1 cut(s) 735
TscAI CASTG 3 cut(s) 19, 718, 778
TseFI GTSAC 4 cut(s) 409, 467, 516, 769
TseI GCWGC 4 cut(s) 343, 423, 456, 578
Tsp45I GTSAC 4 cut(s) 409, 467, 516, 769
TspDTI ATGAA 2 cut(s) 137, 688
TspGWI ACGGA 2 cut(s) 196, 636
TspRI CASTG 3 cut(s) 19, 718, 778
Van91I CCANNNNNTGG 1 cut(s) 680
VpaK11BI GGWCC 2 cut(s) 50, 500
XapI RAATTY 1 cut(s) 537
XceI RCATGY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XspI CTAG 1 cut(s) 227
ZraI GACGTC 1 cut(s) 262
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.