AT4G36620

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012268
Physical Location & Seq
Reverse (-)
17268689 .. 17269999
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36620.1

Sequence Viewer

Length: 636 bp
ATGGGTTTCTCAATGTTCTTCTCCCCCGAAAACGACGTCAGCCATCATTCCTCTCCATATGCTTCTGTTGACTGCACTCTCTCACTTGGAACTCCCTCCACTCGCCTCTGCAACGAGGATGATGAACGTAGATTCTCGTCTCATACCTCCGACACCATAGGCTGGGACTTCTTGAACGGTTCCAAGAAAGGCGGTGGAGGCGGCGGACATAACCTCCTCGCTCGCCGTTGCGCCAACTGCGACACCACTTCTACTCCTCTTTGGAGAAACGGTCCAAGAGGTCCCAAGTCGTTGTGTAATGCGTGTGGAATCCGATTCAAGAAAGAAGAGAGACGTGCATCGACCGCCAGAAACTCGACCTCCGGCGGAGGATCAACTGCAGCTGGAGTTCCAACTTTGGATCATCAAGCAAGTGCAAATTATTATTATAACAATAATAACCAATATGCTTCATCGTCGCCTTGGCACCATCAGCATAATACGCAGAGAGTTCCATATTACTCGCCGGCCAATAACGAATACTCATACGTTGATGATGTCAGAGTTGTTGATCATGACGTCACAACCGACCCGTTCTTGTCTTGGAGGCTTAACGTCGCCGACCGGACCGGCCTTGTCCACGATTTTACGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

211

Amino Acids

23.32

Weight (kDa)

6.78

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 77 - 111 1.6e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AatII GACGTC 2 cut(s) 39, 561
AccB1I GGYRCC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 5 cut(s) 192, 201, 204, 345, 366
AclWI GGATC 2 cut(s) 379, 408
AcoI YGGCCR 1 cut(s) 507
AcyI GRCGYC 2 cut(s) 36, 558
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 2 cut(s) 175, 319
AjiI CACGTC 1 cut(s) 335
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw26I GTCTC 2 cut(s) 144, 325
AlwI GGATC 2 cut(s) 379, 408
AoxI GGCC 2 cut(s) 507, 610
ApeKI GCWGC 1 cut(s) 380
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 3 cut(s) 272, 281, 606
AvaII GGWCC 3 cut(s) 272, 281, 606
BanI GGYRCC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 392
BccI CCATC 2 cut(s) 51, 477
BceAI ACGGC 1 cut(s) 210
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 144, 325
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 2 cut(s) 202, 381
BlsI GCNGC 2 cut(s) 203, 382
Bme18I GGWCC 3 cut(s) 272, 281, 606
BmgBI CACGTC 1 cut(s) 335
BmgT120I GGNCC 3 cut(s) 272, 281, 606
BmiI GGNNCC 3 cut(s) 181, 283, 467
BmsI GCATC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 405
BsaHI GRCGYC 2 cut(s) 36, 558
BsaJI CCNNGG 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 603
BsaXI ACNNNNNCTCC 8 cut(s) 198, 228, 238, 256, 268, 286, 344, 374
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse118I RCCGGY 2 cut(s) 505, 608
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 206, 246
BseXI GCAGC 1 cut(s) 392
BseYI CCCAGC 1 cut(s) 162
BsgI GTGCAG 1 cut(s) 58
Bsh1285I CGRYCG 2 cut(s) 345, 604
BshFI GGCC 2 cut(s) 509, 612
BshNI GGYRCC 1 cut(s) 465
BsiEI CGRYCG 2 cut(s) 345, 604
BsiSI CCGG 4 cut(s) 363, 506, 604, 609
BslFI GGGAC 2 cut(s) 179, 267
BslI CCNNNNNNNGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 144, 325
BsmBI CGTCTC 2 cut(s) 144, 325
BsmFI GGGAC 2 cut(s) 179, 267
BsnI GGCC 2 cut(s) 509, 612
Bsp143I GATC 3 cut(s) 371, 400, 550
BspACI CCGC 5 cut(s) 192, 201, 204, 345, 366
BspANI GGCC 2 cut(s) 509, 612
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 3 cut(s) 181, 283, 467
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 2 cut(s) 379, 408
BspT107I GGYRCC 1 cut(s) 465
BsrFI RCCGGY 2 cut(s) 505, 608
BssAI RCCGGY 2 cut(s) 505, 608
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 3 cut(s) 371, 400, 550
BssNI GRCGYC 2 cut(s) 36, 558
BssT1I CCWWGG 1 cut(s) 461
Bst4CI ACNGT 2 cut(s) 179, 272
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 2 cut(s) 36, 558
BstC8I GCNNGC 2 cut(s) 223, 507
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 3 cut(s) 374, 403, 553
BstMAI GTCTC 2 cut(s) 144, 325
BstMBI GATC 3 cut(s) 371, 400, 550
BstMCI CGRYCG 2 cut(s) 345, 604
BstMWI GCNNNNNNNGC 5 cut(s) 198, 237, 344, 472, 481
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 509, 612
BtrI CACGTC 1 cut(s) 335
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 2 cut(s) 223, 507
CciI TCATGA 1 cut(s) 553
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 2 cut(s) 505, 608
Cfr13I GGNCC 3 cut(s) 272, 281, 606
CpoI CGGWCCG 1 cut(s) 606
CspI CGGWCCG 1 cut(s) 606
CviAII CATG 1 cut(s) 554
CviJI RGCY 6 cut(s) 42, 162, 383, 509, 589, 612
CviKI_1 RGCY 6 cut(s) 42, 162, 383, 509, 589, 612
DpnI GATC 3 cut(s) 373, 402, 552
DpnII GATC 3 cut(s) 371, 400, 550
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 2 cut(s) 219, 381
Eco130I CCWWGG 1 cut(s) 461
Eco47I GGWCC 3 cut(s) 272, 281, 606
EcoO109I RGGNCCY 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 461
Esp3I CGTCTC 2 cut(s) 144, 325
FaeI CATG 1 cut(s) 557
FaqI GGGAC 2 cut(s) 179, 267
FatI CATG 1 cut(s) 553
FauNDI CATATG 1 cut(s) 58
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 202, 381
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 202, 381
GlaI GCGC 1 cut(s) 232
GluI GCNGC 2 cut(s) 202, 381
GsaI CCCAGC 1 cut(s) 166
GsuI CTGGAG 1 cut(s) 405
HaeIII GGCC 2 cut(s) 509, 612
HapII CCGG 4 cut(s) 363, 506, 604, 609
HhaI GCGC 1 cut(s) 233
Hin1I GRCGYC 2 cut(s) 36, 558
Hin1II CATG 1 cut(s) 557
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 3 cut(s) 132, 309, 315
HpaII CCGG 4 cut(s) 363, 506, 604, 609
Hpy166II GTNNAC 2 cut(s) 70, 619
Hpy188I TCNGA 3 cut(s) 151, 314, 542
Hpy188III TCNNGA 3 cut(s) 172, 319, 554
Hpy8I GTNNAC 2 cut(s) 70, 619
Hpy99I CGWCG 3 cut(s) 38, 460, 599
HpyCH4III ACNGT 2 cut(s) 179, 272
HpyCH4IV ACGT 6 cut(s) 36, 127, 334, 528, 558, 594
HpyCH4V TGCA 5 cut(s) 75, 111, 338, 380, 416
HpyF10VI GCNNNNNNNGC 5 cut(s) 198, 237, 344, 472, 481
HpySE526I ACGT 6 cut(s) 36, 127, 334, 528, 558, 594
Hsp92I GRCGYC 2 cut(s) 36, 558
Hsp92II CATG 1 cut(s) 557
HspAI GCGC 1 cut(s) 231
KroI GCCGGC 1 cut(s) 505
KroNI GCCGGC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 3 cut(s) 371, 400, 550
LpnPI CCDG 7 cut(s) 148, 361, 369, 376, 519, 617, 622
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 1 cut(s) 347
MaeII ACGT 6 cut(s) 36, 127, 334, 528, 558, 594
MaeIII GTNAC 1 cut(s) 559
MalI GATC 3 cut(s) 373, 402, 552
MboI GATC 3 cut(s) 371, 400, 550
MboII GAAGA 2 cut(s) 10, 338
MluCI AATT 1 cut(s) 418
MmeI TCCRAC 2 cut(s) 174, 416
MroNI GCCGGC 1 cut(s) 505
MseI TTAA 1 cut(s) 591
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 4 cut(s) 363, 506, 604, 609
MwoI GCNNNNNNNGC 5 cut(s) 198, 237, 344, 472, 481
NaeI GCCGGC 1 cut(s) 507
NdeI CATATG 1 cut(s) 58
NdeII GATC 3 cut(s) 371, 400, 550
NgoMIV GCCGGC 1 cut(s) 505
NlaIII CATG 1 cut(s) 557
NlaIV GGNNCC 3 cut(s) 181, 283, 467
NmuCI GTSAC 1 cut(s) 559
PagI TCATGA 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 564
PdiI GCCGGC 1 cut(s) 507
PfeI GAWTC 3 cut(s) 132, 309, 315
PflMI CCANNNNNTGG 1 cut(s) 162
PkrI GCNGC 2 cut(s) 203, 382
PpuMI RGGWCCY 1 cut(s) 281
PsiI TTATAA 1 cut(s) 429
Psp5II RGGWCCY 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 181, 283, 467
PspPI GGNCC 3 cut(s) 272, 281, 606
PspPPI RGGWCCY 1 cut(s) 281
PstI CTGCAG 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 383
Rsr2I CGGWCCG 1 cut(s) 606
RsrII CGGWCCG 1 cut(s) 606
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 2 cut(s) 202, 381
Sau3AI GATC 3 cut(s) 371, 400, 550
Sau96I GGNCC 3 cut(s) 272, 281, 606
SfaNI GCATC 1 cut(s) 347
SfcI CTRYAG 1 cut(s) 378
SinI GGWCC 3 cut(s) 272, 281, 606
Sse9I AATT 1 cut(s) 418
SsiI CCGC 5 cut(s) 192, 201, 204, 345, 366
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 2 cut(s) 179, 272
TaiI ACGT 6 cut(s) 39, 130, 337, 531, 561, 597
TaqI TCGA 2 cut(s) 341, 356
TasI AATT 1 cut(s) 418
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 3 cut(s) 132, 309, 315
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 2 cut(s) 138, 441
Van91I CCANNNNNTGG 1 cut(s) 162
VpaK11BI GGWCC 3 cut(s) 272, 281, 606
ZraI GACGTC 2 cut(s) 37, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.