Prupe.7G155400_v2.0.a1

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012268
Physical Location & Seq
Forward (+)
16451084 .. 16452773
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G155400.1

Sequence Viewer

Length: 846 bp
ATGCAGAGGTGTAGTAGCAGCTCACATGGGAACATGGCCGGTCCATGTACATGTGGTGTCCTCCACCACACCCAATCCAATTCCTCCTTCTCCATGCTCTTCTCCATGCCCAACCATCACAAGCCGTACGATCATCATCATCATCACCATCACGAAACGCAGCATGATCATCATAATCACATGTACCCGTTCGCATCCTCTTCCTCCTCTGTCGACTGTACTCTCTCCCTAGGCACTCCCTCCACCCGCCTCACCGAAAACGACGTCGTCCTCGACGACAAGCGCACCCGCAACGAGCGGCGCAGCGTTTCCAACTTCTGCTGGGACTTGTTGCAGCCCAAGCACCACGCCACGTCAGCCACGTCTTCCCACCATCACAAGAACGGCAGCCACCGCAGCGGCGGCAATGGTAACGGCGTATCTAACGCCGTCCATTCTAATAACGACCCCCTCCTCGCCCGCCGCTGCGCCAACTGCGACACCACCTCCACCCCTCTCTGGAGAAACGGTCCAAGAGGCCCCAAGTCACTGTGCAATGCCTGTGGAATTCGGTTCAAGAAAGAAGAGAGGCGTGCCACGGCGGCAGCAGCAAACGGCGGCAGTTCGAGTGTCGTAGGAATGGATCACAACAGTCACATGTTGAGCCAGCACCACCACAACAATTCATGGATGCCGCATTCACAAACCCAGAAAATGCCGTGCTTCTCTCCTGCCATGGGCAACGAGTTTCGGTTCATGGAGGACGACACTGCGCACCACGAAAACGACGCCACCGGCATTCCCTTCCTCTCTTGGCGTCTCAACGTCACGGACAGACCAAGCCTCGTCCATGACTTCACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

282

Amino Acids

31.38

Weight (kDa)

8.38

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
Acc16I TGCGCA 1 cut(s) 753
AccBSI CCGCTC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 213
AclWI GGATC 1 cut(s) 630
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 546
AcyI GRCGYC 3 cut(s) 264, 768, 796
AfaI GTAC 4 cut(s) 49, 128, 185, 220
AfiI CCNNNNNNNGG 2 cut(s) 498, 716
AflIII ACRYGT 3 cut(s) 50, 180, 636
AgsI TTSAA 1 cut(s) 556
AjiI CACGTC 2 cut(s) 354, 363
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 803
AlwI GGATC 1 cut(s) 630
AoxI GGCC 2 cut(s) 36, 517
ApeKI GCWGC 9 cut(s) 18, 160, 303, 334, 387, 396, 465, 584, 587
ApoI RAATTY 1 cut(s) 546
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AspA2I CCTAGG 1 cut(s) 229
AspLEI GCGC 4 cut(s) 285, 303, 470, 754
AspS9I GGNCC 3 cut(s) 41, 509, 518
AsuHPI GGTGA 2 cut(s) 137, 244
AvaII GGWCC 2 cut(s) 41, 509
AvrII CCTAGG 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 9 cut(s) 30, 172, 315, 346, 399, 408, 452, 596, 599
BccI CCATC 3 cut(s) 123, 156, 381
BceAI ACGGC 7 cut(s) 109, 400, 413, 430, 594, 610, 682
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 803
BfaI CTAG 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 581
BlnI CCTAGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 41, 509
BmgBI CACGTC 2 cut(s) 354, 363
BmgT120I GGNCC 3 cut(s) 41, 509, 518
BmiI GGNNCC 1 cut(s) 520
BmsI GCATC 2 cut(s) 203, 660
BpiI GAAGAC 1 cut(s) 357
BpmI CTGGAG 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 135
BsaHI GRCGYC 3 cut(s) 264, 768, 796
BsaJI CCNNGG 3 cut(s) 229, 576, 714
BsaXI ACNNNNNCTCC 4 cut(s) 470, 493, 500, 523
Bsc4I CCNNNNNNNGG 2 cut(s) 498, 716
Bse118I RCCGGY 2 cut(s) 38, 773
Bse3DI GCAATG 2 cut(s) 412, 541
Bse8I GATNNNNATC 1 cut(s) 135
BseDI CCNNGG 3 cut(s) 229, 576, 714
BseGI GGATG 2 cut(s) 194, 675
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 498, 716
BseMI GCAATG 2 cut(s) 412, 541
BseRI GAGGAG 2 cut(s) 196, 443
BseXI GCAGC 9 cut(s) 30, 172, 315, 346, 399, 408, 452, 596, 599
BseYI CCCAGC 1 cut(s) 321
BshFI GGCC 2 cut(s) 38, 519
BsiSI CCGG 2 cut(s) 39, 774
BsiWI CGTACG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 498, 716
BsmAI GTCTC 1 cut(s) 803
BsmBI CGTCTC 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 338
BsmI GAATGC 2 cut(s) 676, 777
BsnI GGCC 2 cut(s) 38, 519
Bsp1407I TGTACA 1 cut(s) 47
Bsp143I GATC 3 cut(s) 130, 166, 622
Bsp19I CCATGG 1 cut(s) 714
BspANI GGCC 2 cut(s) 38, 519
BspLI GGNNCC 1 cut(s) 520
BspPI GGATC 1 cut(s) 630
BspQI GCTCTTC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 298
BsrDI GCAATG 2 cut(s) 412, 541
BsrFI RCCGGY 2 cut(s) 38, 773
BsrGI TGTACA 1 cut(s) 47
BssAI RCCGGY 2 cut(s) 38, 773
BssECI CCNNGG 3 cut(s) 229, 576, 714
BssMI GATC 3 cut(s) 130, 166, 622
BssNI GRCGYC 3 cut(s) 264, 768, 796
BssT1I CCWWGG 2 cut(s) 229, 714
Bst4CI ACNGT 4 cut(s) 218, 509, 531, 632
Bst6I CTCTTC 3 cut(s) 104, 205, 558
BstACI GRCGYC 3 cut(s) 264, 768, 796
BstAUI TGTACA 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 460, 573, 647
BstDSI CCRYGG 2 cut(s) 576, 714
BstF5I GGATG 2 cut(s) 194, 675
BstHHI GCGC 4 cut(s) 285, 303, 470, 754
BstKTI GATC 3 cut(s) 133, 169, 625
BstMAI GTCTC 1 cut(s) 803
BstMBI GATC 3 cut(s) 130, 166, 622
BstMWI GCNNNNNNNGC 8 cut(s) 340, 356, 393, 396, 402, 474, 581, 587
BstNSI RCATGY 3 cut(s) 54, 184, 640
BstV1I GCAGC 9 cut(s) 30, 172, 315, 346, 399, 408, 452, 596, 599
BstV2I GAAGAC 1 cut(s) 357
BsuRI GGCC 2 cut(s) 38, 519
BtgI CCRYGG 2 cut(s) 576, 714
BtrI CACGTC 2 cut(s) 354, 363
BtsCI GGATG 2 cut(s) 194, 675
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 2 cut(s) 527, 747
Cac8I GCNNGC 3 cut(s) 460, 573, 647
CfoI GCGC 4 cut(s) 285, 303, 470, 754
Cfr10I RCCGGY 2 cut(s) 38, 773
Cfr13I GGNCC 3 cut(s) 41, 509, 518
CseI GACGC 2 cut(s) 776, 785
Csp6I GTAC 4 cut(s) 48, 127, 184, 219
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviJI RGCY 9 cut(s) 21, 38, 124, 337, 359, 390, 519, 645, 822
CviKI_1 RGCY 9 cut(s) 21, 38, 124, 337, 359, 390, 519, 645, 822
CviQI GTAC 4 cut(s) 48, 127, 184, 219
DpnI GATC 3 cut(s) 132, 168, 624
DpnII GATC 3 cut(s) 130, 166, 622
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 3 cut(s) 104, 205, 558
EarI CTCTTC 3 cut(s) 104, 205, 558
Eco130I CCWWGG 2 cut(s) 229, 714
Eco47I GGWCC 2 cut(s) 41, 509
EcoO109I RGGNCCY 1 cut(s) 518
EcoRI GAATTC 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 229, 714
ErhI CCWWGG 2 cut(s) 229, 714
Esp3I CGTCTC 1 cut(s) 803
FaqI GGGAC 1 cut(s) 338
FauI CCCGC 3 cut(s) 254, 296, 467
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 1 cut(s) 213
FokI GGATG 2 cut(s) 181, 682
FspBI CTAG 1 cut(s) 230
FspI TGCGCA 1 cut(s) 753
GlaI GCGC 4 cut(s) 284, 302, 469, 753
GsaI CCCAGC 1 cut(s) 325
GsuI CTGGAG 1 cut(s) 520
HaeIII GGCC 2 cut(s) 38, 519
HapII CCGG 2 cut(s) 39, 774
HgaI GACGC 2 cut(s) 776, 785
HhaI GCGC 4 cut(s) 285, 303, 470, 754
Hin1I GRCGYC 3 cut(s) 264, 768, 796
Hin6I GCGC 4 cut(s) 283, 301, 468, 752
HinP1I GCGC 4 cut(s) 283, 301, 468, 752
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HpaII CCGG 2 cut(s) 39, 774
HphI GGTGA 2 cut(s) 137, 244
Hpy166II GTNNAC 1 cut(s) 214
Hpy188III TCNNGA 3 cut(s) 152, 499, 556
Hpy8I GTNNAC 1 cut(s) 214
Hpy99I CGWCG 4 cut(s) 266, 269, 278, 770
HpyAV CCTTC 2 cut(s) 97, 793
HpyCH4III ACNGT 4 cut(s) 218, 509, 531, 632
HpyCH4IV ACGT 4 cut(s) 264, 353, 362, 804
HpyCH4V TGCA 3 cut(s) 4, 334, 534
HpyF10VI GCNNNNNNNGC 8 cut(s) 340, 356, 393, 396, 402, 474, 581, 587
HpySE526I ACGT 4 cut(s) 264, 353, 362, 804
Hsp92I GRCGYC 3 cut(s) 264, 768, 796
HspAI GCGC 4 cut(s) 283, 301, 468, 752
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 3 cut(s) 130, 166, 622
LguI GCTCTTC 1 cut(s) 104
LpnPI CCDG 8 cut(s) 52, 307, 484, 553, 659, 701, 723, 787
Lsp1109I GCAGC 9 cut(s) 30, 172, 315, 346, 399, 408, 452, 596, 599
LweI GCATC 2 cut(s) 203, 660
MaeI CTAG 1 cut(s) 230
MaeII ACGT 4 cut(s) 264, 353, 362, 804
MaeIII GTNAC 4 cut(s) 410, 525, 632, 805
MalI GATC 3 cut(s) 132, 168, 624
MbiI CCGCTC 1 cut(s) 298
MboI GATC 3 cut(s) 130, 166, 622
MboII GAAGA 4 cut(s) 91, 192, 357, 575
MluCI AATT 3 cut(s) 79, 546, 661
MmeI TCCRAC 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 49
MspA1I CMGCKG 2 cut(s) 399, 465
MspI CCGG 2 cut(s) 39, 774
Mva1269I GAATGC 2 cut(s) 676, 777
MwoI GCNNNNNNNGC 8 cut(s) 340, 356, 393, 396, 402, 474, 581, 587
NcoI CCATGG 1 cut(s) 714
NdeII GATC 3 cut(s) 130, 166, 622
NlaIV GGNNCC 1 cut(s) 520
NmuCI GTSAC 3 cut(s) 525, 632, 805
NsbI TGCGCA 1 cut(s) 753
NspI RCATGY 3 cut(s) 54, 184, 640
PciI ACATGT 3 cut(s) 50, 180, 636
PciSI GCTCTTC 1 cut(s) 104
PcsI WCGNNNNNNNCGW 3 cut(s) 270, 273, 359
PctI GAATGC 2 cut(s) 676, 777
Pfl23II CGTACG 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 266
PscI ACATGT 3 cut(s) 50, 180, 636
PspFI CCCAGC 1 cut(s) 321
PspLI CGTACG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 3 cut(s) 41, 509, 518
PsyI GACNNNGTC 1 cut(s) 266
RsaI GTAC 4 cut(s) 49, 128, 185, 220
RsaNI GTAC 4 cut(s) 48, 127, 184, 219
RseI CAYNNNNRTG 1 cut(s) 49
SalI GTCGAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 104
Sau3AI GATC 3 cut(s) 130, 166, 622
Sau96I GGNCC 3 cut(s) 41, 509, 518
SetI ASST 7 cut(s) 11, 23, 267, 356, 365, 488, 807
SfaNI GCATC 2 cut(s) 203, 660
SinI GGWCC 2 cut(s) 41, 509
SmiMI CAYNNNNRTG 1 cut(s) 49
Sse9I AATT 3 cut(s) 79, 546, 661
SspMI CTAG 1 cut(s) 230
StyI CCWWGG 2 cut(s) 229, 714
TaaI ACNGT 4 cut(s) 218, 509, 531, 632
TaiI ACGT 4 cut(s) 267, 356, 365, 807
TaqI TCGA 3 cut(s) 213, 273, 605
TasI AATT 3 cut(s) 79, 546, 661
TatI WGTACW 2 cut(s) 47, 218
TauI GCSGC 7 cut(s) 301, 402, 405, 465, 584, 600, 676
TscAI CASTG 2 cut(s) 534, 754
TseFI GTSAC 3 cut(s) 525, 632, 805
TseI GCWGC 9 cut(s) 18, 160, 303, 334, 387, 396, 465, 584, 587
Tsp45I GTSAC 3 cut(s) 525, 632, 805
TspDTI ATGAA 2 cut(s) 654, 724
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 2 cut(s) 534, 754
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 41, 509
XapI RAATTY 1 cut(s) 546
XceI RCATGY 3 cut(s) 54, 184, 640
XmaJI CCTAGG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 230
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.