Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8437591.1

Orthogroup ID

OG0012268

Physical Location & Seq

Genomic Coordinates Reverse (-)

1226 .. 1531

Gene Structure 306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8437591.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ctgcagtcgctttgcaatgcctgtggaatccggttcaagaaggaagagagacgagccaccgccgcagccgccacgtcagctaacggcgcaacctcgtctggcagccattcatggattaacaactctcagactcagaaaatgcagtgctacgctccttcaatgaacggaaacgaattccggttcgtggacgatcacgacatgatgacgtctcacgaaccggccgacgccggcggcggcattcccttcctttcgtggcgcctcaacgtcacagacagaccaagcctcgtccatgacttcaccagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

101

Amino Acids

11.11

Weight (kDa)

7.07

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012268)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50870 AT4G36620
fragaria_vesca	FvH4_1g13230
malus_domestica	MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica	Prupe.7G155400_v2.0.a1
pyrus_communis	pycom02g11610 pycom15g22800
rosa_chinensis	RchiOBHm_Chr2g0101421
rosa_laevigata	RLG00000017079
rosa_multiflora	Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii	Rroxscaffold_2G00141320
rosa_rugosa	Rorug02G0098300
rosa_samantha	Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana	Rw2G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	255
AciI	CCGC	5 cut(s)	60, 63, 69, 231, 234
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	173
AcyI	GRCGYC	3 cut(s)	206, 225, 256
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	37, 159
AjiI	CACGTC	1 cut(s)	75
AluBI	AGCT	1 cut(s)	80
AluI	AGCT	1 cut(s)	80
Alw26I	GTCTC	2 cut(s)	43, 213
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	65, 102
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	2 cut(s)	89, 258
AsuHPI	GGTGA	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	77, 114
BceAI	ACGGC	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	43, 213
BfmI	CTRYAG	1 cut(s)	2
BfoI	RGCGCY	1 cut(s)	259
BisI	GCNGC	6 cut(s)	63, 66, 69, 103, 232, 235
BlsI	GCNGC	6 cut(s)	64, 67, 70, 104, 233, 236
BmgBI	CACGTC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	257
BsaHI	GRCGYC	3 cut(s)	206, 225, 256
BsaWI	WCCGGW	2 cut(s)	30, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	2 cut(s)	217, 227
Bse3DI	GCAATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	140, 146
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	77, 114
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	255
BsiEI	CGRYCG	1 cut(s)	222
BsiSI	CCGG	4 cut(s)	31, 178, 218, 228
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	2 cut(s)	43, 213
BsmBI	CGTCTC	2 cut(s)	43, 213
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	5 cut(s)	60, 63, 69, 231, 234
BspANI	GGCC	1 cut(s)	221
BspCNI	CTCAG	2 cut(s)	139, 145
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	22
BsrFI	RCCGGY	2 cut(s)	217, 227
BssAI	RCCGGY	2 cut(s)	217, 227
BssMI	GATC	1 cut(s)	190
BssNI	GRCGYC	3 cut(s)	206, 225, 256
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	3 cut(s)	206, 225, 256
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	126, 132
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	2 cut(s)	89, 258
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	43, 213
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 68, 77, 86
BstSFI	CTRYAG	1 cut(s)	2
BstV1I	GCAGC	2 cut(s)	77, 114
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	2 cut(s)	89, 258
Cfr10I	RCCGGY	2 cut(s)	217, 227
CseI	GACGC	1 cut(s)	233
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	3 cut(s)	111, 199, 290
CviJI	RGCY	6 cut(s)	56, 68, 80, 105, 221, 282
CviKI_1	RGCY	6 cut(s)	56, 68, 80, 105, 221, 282
DdeI	CTNAG	2 cut(s)	126, 132
DinI	GGCGCC	1 cut(s)	257
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EclXI	CGGCCG	1 cut(s)	219
Eco52I	CGGCCG	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	173
EgeI	GGCGCC	1 cut(s)	257
EheI	GGCGCC	1 cut(s)	257
Esp3I	CGTCTC	2 cut(s)	43, 213
FaeI	CATG	3 cut(s)	114, 202, 293
FaiI	YATR	3 cut(s)	112, 200, 291
FatI	CATG	3 cut(s)	110, 198, 289
Fnu4HI	GCNGC	6 cut(s)	63, 66, 69, 103, 232, 235
Fsp4HI	GCNGC	6 cut(s)	63, 66, 69, 103, 232, 235
GlaI	GCGC	2 cut(s)	88, 257
GluI	GCNGC	6 cut(s)	63, 66, 69, 103, 232, 235
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	4 cut(s)	31, 178, 218, 228
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	2 cut(s)	89, 258
Hin1I	GRCGYC	3 cut(s)	206, 225, 256
Hin1II	CATG	3 cut(s)	114, 202, 293
Hin6I	GCGC	2 cut(s)	87, 256
HinP1I	GCGC	2 cut(s)	87, 256
HinfI	GANTC	2 cut(s)	27, 130
HpaII	CCGG	4 cut(s)	31, 178, 218, 228
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	129, 135
Hpy188III	TCNNGA	3 cut(s)	37, 194, 212
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	34, 165, 253
HpyCH4IV	ACGT	3 cut(s)	74, 206, 264
HpyCH4V	TGCA	3 cut(s)	4, 15, 142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 68, 77, 86
HpyF3I	CTNAG	2 cut(s)	126, 132
HpySE526I	ACGT	3 cut(s)	74, 206, 264
Hsp92I	GRCGYC	3 cut(s)	206, 225, 256
Hsp92II	CATG	3 cut(s)	114, 202, 293
HspAI	GCGC	2 cut(s)	87, 256
KasI	GGCGCC	1 cut(s)	255
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	6 cut(s)	34, 44, 84, 191, 231, 241
Lsp1109I	GCAGC	2 cut(s)	77, 114
MaeII	ACGT	3 cut(s)	74, 206, 264
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	56
MluCI	AATT	1 cut(s)	173
Mly113I	GGCGCC	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	103, 269, 293
MreI	CGCCGGCG	1 cut(s)	227
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	1 cut(s)	117
MspI	CCGG	4 cut(s)	31, 178, 218, 228
Mva1269I	GAATGC	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	62, 68, 77, 86
NaeI	GCCGGC	1 cut(s)	229
NarI	GGCGCC	1 cut(s)	256
NdeII	GATC	1 cut(s)	190
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	3 cut(s)	114, 202, 293
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PctI	GAATGC	1 cut(s)	237
PdiI	GCCGGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	27
PkrI	GCNGC	6 cut(s)	64, 67, 70, 104, 233, 236
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	124
PspN4I	GGNNCC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	6 cut(s)	63, 66, 69, 103, 232, 235
Sau3AI	GATC	1 cut(s)	190
SchI	GAGTC	1 cut(s)	124
SetI	ASST	5 cut(s)	77, 82, 95, 209, 267
SfcI	CTRYAG	1 cut(s)	2
SfoI	GGCGCC	1 cut(s)	257
SgrAI	CRCCGGYG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	173
SsiI	CCGC	5 cut(s)	60, 63, 69, 231, 234
SspDI	GGCGCC	1 cut(s)	255
TaiI	ACGT	3 cut(s)	77, 209, 267
TasI	AATT	1 cut(s)	173
TauI	GCSGC	4 cut(s)	65, 71, 234, 237
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	2 cut(s)	65, 102
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	99, 176
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	149
XapI	RAATTY	1 cut(s)	173
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.