Rroxscaffold_2G00141320

GATA transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012268
Physical Location & Seq
Reverse (-)
79613722 .. 79615272
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141320.1

Sequence Viewer

Length: 759 bp
ATGCAGAGGTGCAGTAGTACTAGCTCTCAGGGCCACGTTATGGGGTCATGCTCGTGTGGCTTGTTCCACACCCAGAGCAACTCCTCCTTCTCCATGTTGTTCTCCATGCCGAACAATCATCACAAGGCGTACGATCAATACGAGCCATCGGATCACCACCACATGTACTCCTTCGCCTCTCCTTCTTCTGTCGATTGCACTCTCTCCCTAGGTACGCCGTCCACTCGTCTCACATCCGAGGACGGCAACGACGACAAGCCCGGTGGACGGCACGAGCGACGCTCCGTTTCGAACTTCTGCTGGGACTTGTTACAACCCAAGCACGCCACGTCAGCCCCGAAAAACAGCAGCGGCAACCGCGGCGGCGCCGGGAATAACGATTCGCTTCTGGCTCGCCGCTGCGCCAACTGCGACACCACCTCGACACCGCTCTGGCGAAACGGCCCACGAGGCCCAAAGTCGCTTTGCAACGCCTGTGGAATCCGGTTCAAGAAGGAAGAGAGACGAGCCACCGCCGCAGCCGCCACGTCAGCTAACGGCGCAACCTCGTCCGGCAGCCATTCGTGGATTAACAACTCTCAGACTCAGAAAATGCAGTGCTACGCTCCTTCAATGAACGGAAACGAATTCCGGTTCATGGACGATCACGACATGATGACGTCTCACGAACAGACCGACGCCGGCGGCGGCATTCCGTTCCTTTCGTGGCGCCTCAACGTCACAGACAGACCAAGCCTCGTCCATGACTTCACCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009909 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0040034 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090567 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000026 GO:2000112 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA

Protein Analysis

252

Amino Acids

27.6

Weight (kDa)

8.35

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 134 - 168 2.1e-17 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012268)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50870 AT4G36620
fragaria_vesca FvH4_1g13230
malus_domestica MD02G1146800.v1.1 MD15G1260900.v1.1
prunus_persica Prupe.7G155400_v2.0.a1
pyrus_communis pycom02g11610 pycom15g22800
rosa_chinensis RchiOBHm_Chr2g0101421
rosa_laevigata RLG00000017079
rosa_multiflora Rmu_co8437591.1_g000001 Rmu_sc0006153.1_g000057
rosa_roxburghii Rroxscaffold_2G00141320
rosa_rugosa Rorug02G0098300
rosa_samantha Rh2AG146900 Rh2BG152200 Rh2CG152700 Rh2DG152300
rosa_wichuraiana Rw2G011450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 662
AccB1I GGYRCC 2 cut(s) 365, 708
AccB7I CCANNNNNTGG 1 cut(s) 40
AccBSI CCGCTC 1 cut(s) 430
AccII CGCG 1 cut(s) 360
AclWI GGATC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 626
AcyI GRCGYC 4 cut(s) 366, 659, 678, 709
AfaI GTAC 4 cut(s) 19, 131, 167, 214
AfiI CCNNNNNNNGG 3 cut(s) 40, 267, 637
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 2 cut(s) 490, 612
AjiI CACGTC 2 cut(s) 330, 528
AluBI AGCT 2 cut(s) 24, 533
AluI AGCT 2 cut(s) 24, 533
Alw26I GTCTC 3 cut(s) 233, 496, 666
AlwI GGATC 1 cut(s) 159
AoxI GGCC 3 cut(s) 31, 442, 451
ApeKI GCWGC 4 cut(s) 348, 399, 518, 555
ApoI RAATTY 1 cut(s) 626
AspA2I CCTAGG 1 cut(s) 208
AspLEI GCGC 4 cut(s) 368, 404, 542, 711
AspS9I GGNCC 3 cut(s) 31, 443, 452
AsuC2I CCSGG 2 cut(s) 261, 370
AsuHPI GGTGA 2 cut(s) 146, 742
AsuII TTCGAA 1 cut(s) 290
AvrII CCTAGG 1 cut(s) 208
BanI GGYRCC 2 cut(s) 365, 708
BauI CACGAG 3 cut(s) 52, 272, 447
BbvI GCAGC 4 cut(s) 360, 386, 530, 567
BccI CCATC 1 cut(s) 154
BceAI ACGGC 5 cut(s) 202, 259, 284, 457, 553
BcnI CCSGG 2 cut(s) 261, 370
BcoDI GTCTC 3 cut(s) 233, 496, 666
BfaI CTAG 2 cut(s) 21, 209
BfoI RGCGCY 2 cut(s) 369, 712
BglI GCCNNNNNGGC 1 cut(s) 450
BlnI CCTAGG 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 261, 370
BmgBI CACGTC 2 cut(s) 330, 528
BmgT120I GGNCC 3 cut(s) 31, 443, 452
BmiI GGNNCC 2 cut(s) 367, 710
BmrFI CCNGG 2 cut(s) 261, 370
BplI GAGNNNNNCTC 2 cut(s) 266, 298
Bpu14I TTCGAA 1 cut(s) 290
BpuMI CCSGG 2 cut(s) 261, 370
BsaHI GRCGYC 4 cut(s) 366, 659, 678, 709
BsaJI CCNNGG 3 cut(s) 208, 237, 358
BsaWI WCCGGW 2 cut(s) 483, 630
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 267, 637
Bse118I RCCGGY 1 cut(s) 680
BseDI CCNNGG 3 cut(s) 208, 237, 358
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 3 cut(s) 40, 267, 637
BseMII CTCAG 3 cut(s) 41, 593, 599
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 4 cut(s) 360, 386, 530, 567
BseYI CCCAGC 1 cut(s) 300
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 3 cut(s) 33, 444, 453
BshNI GGYRCC 2 cut(s) 365, 708
BsiSI CCGG 6 cut(s) 261, 369, 484, 552, 631, 681
BsiWI CGTACG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 3 cut(s) 40, 267, 637
BsmAI GTCTC 3 cut(s) 233, 496, 666
BsmBI CGTCTC 3 cut(s) 233, 496, 666
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 690
BsnI GGCC 3 cut(s) 33, 444, 453
Bsp119I TTCGAA 1 cut(s) 290
Bsp143I GATC 3 cut(s) 133, 151, 643
BspANI GGCC 3 cut(s) 33, 444, 453
BspCNI CTCAG 3 cut(s) 40, 592, 598
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 2 cut(s) 367, 710
BspPI GGATC 1 cut(s) 159
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 2 cut(s) 365, 708
BsrBI CCGCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 680
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 3 cut(s) 208, 237, 358
BssMI GATC 3 cut(s) 133, 151, 643
BssNI GRCGYC 4 cut(s) 366, 659, 678, 709
BssSI CACGAG 3 cut(s) 52, 272, 447
BssT1I CCWWGG 1 cut(s) 208
Bst2BI CACGAG 3 cut(s) 52, 272, 447
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 4 cut(s) 366, 659, 678, 709
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 3 cut(s) 324, 394, 682
BstDEI CTNAG 3 cut(s) 27, 579, 585
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 1 cut(s) 233
BstFNI CGCG 1 cut(s) 360
BstH2I RGCGCY 2 cut(s) 369, 712
BstHHI GCGC 4 cut(s) 368, 404, 542, 711
BstKTI GATC 3 cut(s) 136, 154, 646
BstMAI GTCTC 3 cut(s) 233, 496, 666
BstMBI GATC 3 cut(s) 133, 151, 643
BstNSI RCATGY 1 cut(s) 166
BstSCI CCNGG 2 cut(s) 259, 368
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 4 cut(s) 360, 386, 530, 567
BsuRI GGCC 3 cut(s) 33, 444, 453
BtgI CCRYGG 1 cut(s) 358
BtrI CACGTC 2 cut(s) 330, 528
BtsCI GGATG 1 cut(s) 233
BtsI GCAGTG 1 cut(s) 602
BtsIMutI CAGTG 1 cut(s) 602
Cac8I GCNNGC 3 cut(s) 324, 394, 682
CfoI GCGC 4 cut(s) 368, 404, 542, 711
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 3 cut(s) 31, 443, 452
Cfr42I CCGCGG 1 cut(s) 361
CseI GACGC 2 cut(s) 288, 686
Csp6I GTAC 4 cut(s) 18, 130, 166, 213
CspCI CAANNNNNGTGG 4 cut(s) 244, 279, 457, 492
CviAII CATG 7 cut(s) 48, 94, 106, 163, 637, 652, 743
CviQI GTAC 4 cut(s) 18, 130, 166, 213
DdeI CTNAG 3 cut(s) 27, 579, 585
DinI GGCGCC 2 cut(s) 367, 710
DpnI GATC 3 cut(s) 135, 153, 645
DpnII GATC 3 cut(s) 133, 151, 643
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 208
EgeI GGCGCC 2 cut(s) 367, 710
EheI GGCGCC 2 cut(s) 367, 710
ErhI CCWWGG 1 cut(s) 208
Esp3I CGTCTC 3 cut(s) 233, 496, 666
FaeI CATG 7 cut(s) 51, 97, 109, 166, 640, 655, 746
FaiI YATR 8 cut(s) 41, 49, 95, 107, 164, 638, 653, 744
FaqI GGGAC 1 cut(s) 317
FatI CATG 7 cut(s) 47, 93, 105, 162, 636, 651, 742
FokI GGATG 1 cut(s) 220
FspBI CTAG 2 cut(s) 21, 209
GlaI GCGC 4 cut(s) 367, 403, 541, 710
GsaI CCCAGC 1 cut(s) 304
HaeII RGCGCY 2 cut(s) 369, 712
HaeIII GGCC 3 cut(s) 33, 444, 453
HapII CCGG 6 cut(s) 261, 369, 484, 552, 631, 681
HgaI GACGC 2 cut(s) 288, 686
HhaI GCGC 4 cut(s) 368, 404, 542, 711
Hin1I GRCGYC 4 cut(s) 366, 659, 678, 709
Hin1II CATG 7 cut(s) 51, 97, 109, 166, 640, 655, 746
Hin6I GCGC 4 cut(s) 366, 402, 540, 709
HinP1I GCGC 4 cut(s) 366, 402, 540, 709
HinfI GANTC 3 cut(s) 380, 480, 583
HpaII CCGG 6 cut(s) 261, 369, 484, 552, 631, 681
HphI GGTGA 2 cut(s) 146, 742
Hpy166II GTNNAC 2 cut(s) 222, 266
Hpy188I TCNGA 4 cut(s) 151, 238, 582, 588
Hpy188III TCNNGA 3 cut(s) 490, 647, 665
Hpy8I GTNNAC 2 cut(s) 222, 266
Hpy99I CGWCG 3 cut(s) 254, 282, 680
HpyAV CCTTC 5 cut(s) 97, 181, 192, 487, 618
HpyCH4IV ACGT 5 cut(s) 36, 329, 527, 659, 717
HpyCH4V TGCA 5 cut(s) 4, 12, 198, 468, 595
HpyF3I CTNAG 3 cut(s) 27, 579, 585
HpySE526I ACGT 5 cut(s) 36, 329, 527, 659, 717
Hsp92I GRCGYC 4 cut(s) 366, 659, 678, 709
Hsp92II CATG 7 cut(s) 51, 97, 109, 166, 640, 655, 746
HspAI GCGC 4 cut(s) 366, 402, 540, 709
KasI GGCGCC 2 cut(s) 365, 708
KroI GCCGGC 1 cut(s) 680
KroNI GCCGGC 1 cut(s) 682
KspI CCGCGG 1 cut(s) 361
Kzo9I GATC 3 cut(s) 133, 151, 643
LmnI GCTCC 2 cut(s) 287, 610
Lsp1109I GCAGC 4 cut(s) 360, 386, 530, 567
MaeI CTAG 2 cut(s) 21, 209
MaeII ACGT 5 cut(s) 36, 329, 527, 659, 717
MaeIII GTNAC 2 cut(s) 309, 718
MalI GATC 3 cut(s) 135, 153, 645
MbiI CCGCTC 1 cut(s) 430
MboI GATC 3 cut(s) 133, 151, 643
MboII GAAGA 2 cut(s) 177, 509
MluCI AATT 1 cut(s) 626
Mly113I GGCGCC 2 cut(s) 366, 709
MlyI GAGTC 1 cut(s) 577
MnlI CCTC 8 cut(s) 94, 187, 232, 430, 443, 556, 722, 746
MreI CGCCGGCG 1 cut(s) 680
MroNI GCCGGC 1 cut(s) 680
MseI TTAA 1 cut(s) 570
MslI CAYNNNNRTG 1 cut(s) 52
MspA1I CMGCKG 3 cut(s) 351, 360, 399
MspI CCGG 6 cut(s) 261, 369, 484, 552, 631, 681
MspR9I CCNGG 2 cut(s) 261, 370
Mva1269I GAATGC 1 cut(s) 690
MvnI CGCG 1 cut(s) 360
NaeI GCCGGC 1 cut(s) 682
NarI GGCGCC 2 cut(s) 366, 709
NciI CCSGG 2 cut(s) 261, 370
NdeII GATC 3 cut(s) 133, 151, 643
NgoMIV GCCGGC 1 cut(s) 680
NlaIII CATG 7 cut(s) 51, 97, 109, 166, 640, 655, 746
NlaIV GGNNCC 2 cut(s) 367, 710
NmuCI GTSAC 1 cut(s) 718
NspI RCATGY 1 cut(s) 166
NspV TTCGAA 1 cut(s) 290
PciI ACATGT 1 cut(s) 162
PcsI WCGNNNNNNNCGW 5 cut(s) 138, 249, 274, 335, 672
PctI GAATGC 1 cut(s) 690
PdiI GCCGGC 1 cut(s) 682
PfeI GAWTC 2 cut(s) 380, 480
Pfl23II CGTACG 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 40
PleI GAGTC 1 cut(s) 577
PluTI GGCGCC 2 cut(s) 369, 712
PpsI GAGTC 1 cut(s) 577
PscI ACATGT 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 300
PspLI CGTACG 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 367, 710
PspPI GGNCC 3 cut(s) 31, 443, 452
RsaI GTAC 4 cut(s) 19, 131, 167, 214
RsaNI GTAC 4 cut(s) 18, 130, 166, 213
RseI CAYNNNNRTG 1 cut(s) 52
SacII CCGCGG 1 cut(s) 361
SaqAI TTAA 1 cut(s) 570
Sau3AI GATC 3 cut(s) 133, 151, 643
Sau96I GGNCC 3 cut(s) 31, 443, 452
ScaI AGTACT 1 cut(s) 19
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 2 cut(s) 261, 370
SfiI GGCCNNNNNGGCC 1 cut(s) 450
SfoI GGCGCC 2 cut(s) 367, 710
Sfr303I CCGCGG 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 290
SgrAI CRCCGGYG 1 cut(s) 680
SgrBI CCGCGG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 52
Sse9I AATT 1 cut(s) 626
SspDI GGCGCC 2 cut(s) 365, 708
SspMI CTAG 2 cut(s) 21, 209
StyD4I CCNGG 2 cut(s) 259, 368
StyI CCWWGG 1 cut(s) 208
TaiI ACGT 5 cut(s) 39, 332, 530, 662, 720
TaqI TCGA 3 cut(s) 192, 290, 422
TaqII GACCGA 1 cut(s) 689
TasI AATT 1 cut(s) 626
TatI WGTACW 2 cut(s) 17, 165
TauI GCSGC 8 cut(s) 354, 363, 366, 399, 518, 524, 687, 690
TfiI GAWTC 2 cut(s) 380, 480
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 1 cut(s) 602
TseFI GTSAC 1 cut(s) 718
TseI GCWGC 4 cut(s) 348, 399, 518, 555
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 2 cut(s) 625, 629
TspGWI ACGGA 3 cut(s) 274, 633, 684
TspRI CASTG 1 cut(s) 602
Van91I CCANNNNNTGG 1 cut(s) 40
XapI RAATTY 1 cut(s) 626
XceI RCATGY 1 cut(s) 166
XmaJI CCTAGG 1 cut(s) 208
XspI CTAG 2 cut(s) 21, 209
ZraI GACGTC 1 cut(s) 660
ZrmI AGTACT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.