AT3G50880

endonuclease III

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016528
Physical Location & Seq
Forward (+)
18913310 .. 18915094
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50880.1

Sequence Viewer

Length: 822 bp
ATGTCTCTCCGTAAAACCCTAACCGCCGTGAATCAATCTTCGTTACCGCCGGATTCTTTAATCTCCGCCGGTAATCTCACTGTTTCAGAGGTCTCTGGTTCATCTTCTAGAATCAGATTTCGTCCTCGTAAAATCAGGAAAGTTTCGTCAGATCCGTCGCCGAGGATCATTATCACCGCGTCTCCTCCTCTATCAACAAAATCGACTGTTGATATCGCTCTACGTCACTTACAAAGCTCCGATGAACTTCTCGGAGCATTAATCACAACGCACAACGATCCTCCACTGTTCGACTCAAGTAATACTCCGTTTCTCTCCTTAGCGAGATCAATCCTATACCAACAACTCGCGACGAAAGCAGCGAAATGTATCTACGATCGATTCATCTCTCTATTCAACGGTGGAGAAGCAGGTGTTGTTCCTGAATCTGTGATCTCACTCTCCGCCGTTGATCTTCGTAAGATCGGTGTCTCCGGGAGAAAAGCTAGTTACCTCCACGATCTAGCTGATAAATACAACAACGGTGTGCTTTCTGATGAATTGATTCTGAAAATGAGTGATGAAGAGTTGATTGATAGGTTAACTTTGGTTAAAGGAATTGGAGTGTGGACTGTTCATATGTTTATGATCTTCTCGTTGCATAGACCTGATGTGTTGCCTGTGGGAGATCTTGGTGTGAGGAAAGGTGTGAAAGATCTTTATGGTTTGAAAAATCTTCCAGGTCCATTGCAAATGGAGCAGCTTTGTGAGAAATGGCGTCCTTATAGGTCTGTTGGTTCATGGTACATGTGGAGACTAATCGAGTCTCGTAAGACCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03410 map03410
Pfam Domains
Protein Families
HhH-GPD

Protein Analysis

273

Amino Acids

30.29

Weight (kDa)

9.64

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 109 - 253 2.3e-20 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50880
fragaria_vesca FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica MD02G1146600.v1.1
prunus_persica Prupe.7G155600_v2.0.a1
pyrus_communis pycom15g22780
rosa_chinensis RchiOBHm_Chr2g0101401
rosa_laevigata RLG00000017075
rosa_rugosa Rorug02G0098500
rosa_samantha Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana Rw2G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AccII CGCG 2 cut(s) 179, 350
AciI CCGC 5 cut(s) 24, 47, 66, 177, 444
AclWI GGATC 3 cut(s) 146, 173, 272
AcyI GRCGYC 1 cut(s) 757
AfaI GTAC 1 cut(s) 785
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 2 cut(s) 397, 709
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 4 cut(s) 237, 485, 506, 742
AluI AGCT 4 cut(s) 237, 485, 506, 742
Alw26I GTCTC 6 cut(s) 9, 97, 186, 475, 787, 810
AlwI GGATC 3 cut(s) 146, 173, 272
ApeKI GCWGC 2 cut(s) 359, 739
AseI ATTAAT 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 543
AspS9I GGNCC 1 cut(s) 722
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 722
BbvI GCAGC 2 cut(s) 371, 751
BceAI ACGGC 2 cut(s) 11, 431
BciT130I CCWGG 1 cut(s) 720
BcnI CCSGG 1 cut(s) 475
BcoDI GTCTC 6 cut(s) 9, 97, 186, 475, 787, 810
BfaI CTAG 3 cut(s) 108, 486, 503
BfuAI ACCTGC 1 cut(s) 401
BglII AGATCT 2 cut(s) 667, 694
BisI GCNGC 2 cut(s) 360, 740
BlsI GCNGC 2 cut(s) 361, 741
Bme1390I CCNGG 2 cut(s) 475, 720
Bme18I GGWCC 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 722
BmrFI CCNGG 2 cut(s) 475, 720
Bpu10I CCTNAGC 1 cut(s) 319
BpuEI CTTGAG 1 cut(s) 280
BpuMI CCSGG 1 cut(s) 475
Bsa29I ATCGAT 1 cut(s) 379
BsaBI GATNNNNATC 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 757
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bse118I RCCGGY 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 725
Bse8I GATNNNNATC 1 cut(s) 170
BseBI CCWGG 1 cut(s) 720
BseCI ATCGAT 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 170
BseMI GCAATG 1 cut(s) 725
BseRI GAGGAG 2 cut(s) 174, 177
BseXI GCAGC 2 cut(s) 371, 751
Bsh1236I CGCG 2 cut(s) 179, 350
Bsh1285I CGRYCG 1 cut(s) 379
BshVI ATCGAT 1 cut(s) 379
BsiEI CGRYCG 1 cut(s) 379
BsiSI CCGG 3 cut(s) 50, 69, 474
BsmAI GTCTC 6 cut(s) 9, 97, 186, 475, 787, 810
BsmBI CGTCTC 1 cut(s) 186
Bso31I GGTCTC 1 cut(s) 97
Bsp68I TCGCGA 1 cut(s) 350
BspACI CCGC 5 cut(s) 24, 47, 66, 177, 444
BspDI ATCGAT 1 cut(s) 379
BspFNI CGCG 2 cut(s) 179, 350
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 3 cut(s) 146, 173, 272
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 725
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 161
BssNI GRCGYC 1 cut(s) 757
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 6 cut(s) 82, 208, 288, 401, 524, 613
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 757
BstDEI CTNAG 1 cut(s) 319
BstFNI CGCG 2 cut(s) 179, 350
BstMAI GTCTC 6 cut(s) 9, 97, 186, 475, 787, 810
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 2 cut(s) 356, 736
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 1 cut(s) 790
BstSCI CCNGG 2 cut(s) 473, 718
BstUI CGCG 2 cut(s) 179, 350
BstV1I GCAGC 2 cut(s) 371, 751
BstX2I RGATCY 3 cut(s) 151, 667, 694
BstYI RGATCY 3 cut(s) 151, 667, 694
Bsu15I ATCGAT 1 cut(s) 379
BsuTUI ATCGAT 1 cut(s) 379
BtsIMutI CAGTG 2 cut(s) 78, 284
BtuMI TCGCGA 1 cut(s) 350
BveI ACCTGC 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 722
ClaI ATCGAT 1 cut(s) 379
CseI GACGC 2 cut(s) 168, 746
Csp6I GTAC 1 cut(s) 784
CviAII CATG 2 cut(s) 780, 787
CviJI RGCY 4 cut(s) 237, 485, 506, 742
CviKI_1 RGCY 4 cut(s) 237, 485, 506, 742
CviQI GTAC 1 cut(s) 784
DdeI CTNAG 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
EciI GGCGGA 2 cut(s) 55, 433
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 718
EcoRV GATATC 1 cut(s) 214
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 2 cut(s) 783, 790
FaiI YATR 9 cut(s) 337, 618, 620, 626, 642, 702, 765, 781, 788
FatI CATG 2 cut(s) 779, 786
FauNDI CATATG 1 cut(s) 618
Fnu4HI GCNGC 2 cut(s) 360, 740
Fsp4HI GCNGC 2 cut(s) 360, 740
FspBI CTAG 3 cut(s) 108, 486, 503
GluI GCNGC 2 cut(s) 360, 740
HapII CCGG 3 cut(s) 50, 69, 474
HgaI GACGC 2 cut(s) 168, 746
Hin1I GRCGYC 1 cut(s) 757
Hin1II CATG 2 cut(s) 783, 790
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HinfI GANTC 8 cut(s) 31, 53, 111, 293, 381, 425, 544, 803
HpaI GTTAAC 1 cut(s) 582
HpaII CCGG 3 cut(s) 50, 69, 474
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 2 cut(s) 582, 609
Hpy188I TCNGA 7 cut(s) 88, 116, 151, 241, 254, 535, 549
Hpy188III TCNNGA 4 cut(s) 108, 136, 349, 422
Hpy8I GTNNAC 2 cut(s) 582, 609
Hpy99I CGWCG 2 cut(s) 160, 355
HpyCH4III ACNGT 6 cut(s) 82, 208, 288, 401, 524, 613
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 640, 730
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 736
HpyF3I CTNAG 1 cut(s) 319
HpySE526I ACGT 1 cut(s) 223
Hsp92I GRCGYC 1 cut(s) 757
Hsp92II CATG 2 cut(s) 783, 790
KspAI GTTAAC 1 cut(s) 582
LmnI GCTCC 3 cut(s) 242, 254, 736
Lsp1109I GCAGC 2 cut(s) 371, 751
MaeI CTAG 3 cut(s) 108, 486, 503
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 3 cut(s) 42, 224, 488
MboII GAAGA 6 cut(s) 30, 96, 446, 575, 622, 707
MflI RGATCY 3 cut(s) 151, 667, 694
MluCI AATT 2 cut(s) 539, 597
MlyI GAGTC 2 cut(s) 287, 812
MnlI CCTC 8 cut(s) 82, 135, 156, 195, 198, 291, 503, 672
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 4 cut(s) 59, 260, 581, 591
MspI CCGG 3 cut(s) 50, 69, 474
MspR9I CCNGG 2 cut(s) 475, 720
MvaI CCWGG 1 cut(s) 720
MvnI CGCG 2 cut(s) 179, 350
MwoI GCNNNNNNNGC 2 cut(s) 356, 736
NciI CCSGG 1 cut(s) 475
NdeI CATATG 1 cut(s) 618
NlaIII CATG 2 cut(s) 783, 790
NmeAIII GCCGAG 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 224
NruI TCGCGA 1 cut(s) 350
NspI RCATGY 1 cut(s) 790
PaqCI CACCTGC 1 cut(s) 401
PciI ACATGT 1 cut(s) 786
PcsI WCGNNNNNNNCGW 2 cut(s) 152, 359
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 6 cut(s) 31, 53, 111, 381, 425, 544
PfoI TCCNGGA 1 cut(s) 473
PkrI GCNGC 2 cut(s) 361, 741
Ple19I CGATCG 1 cut(s) 379
PleI GAGTC 2 cut(s) 287, 811
PpsI GAGTC 2 cut(s) 287, 811
PscI ACATGT 1 cut(s) 786
PshBI ATTAAT 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspPI GGNCC 1 cut(s) 722
PsuI RGATCY 3 cut(s) 151, 667, 694
PvuI CGATCG 1 cut(s) 379
RruI TCGCGA 1 cut(s) 350
RsaI GTAC 1 cut(s) 785
RsaNI GTAC 1 cut(s) 784
SaqAI TTAA 4 cut(s) 59, 260, 581, 591
SatI GCNGC 2 cut(s) 360, 740
Sau96I GGNCC 1 cut(s) 722
SchI GAGTC 2 cut(s) 287, 812
ScrFI CCNGG 2 cut(s) 475, 720
SinI GGWCC 1 cut(s) 722
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 2 cut(s) 539, 597
SsiI CCGC 5 cut(s) 24, 47, 66, 177, 444
SspMI CTAG 3 cut(s) 108, 486, 503
StyD4I CCNGG 2 cut(s) 473, 718
TaaI ACNGT 6 cut(s) 82, 208, 288, 401, 524, 613
TaiI ACGT 1 cut(s) 226
TaqI TCGA 4 cut(s) 203, 291, 379, 801
TasI AATT 2 cut(s) 539, 597
TfiI GAWTC 6 cut(s) 31, 53, 111, 381, 425, 544
Tru1I TTAA 4 cut(s) 59, 260, 581, 591
Tru9I TTAA 4 cut(s) 59, 260, 581, 591
TscAI CASTG 2 cut(s) 85, 291
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 359, 739
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 7 cut(s) 90, 258, 373, 552, 576, 605, 768
TspGWI ACGGA 2 cut(s) 144, 297
TspRI CASTG 2 cut(s) 85, 291
VpaK11BI GGWCC 1 cut(s) 722
VspI ATTAAT 1 cut(s) 260
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 1 cut(s) 790
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 3 cut(s) 108, 486, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.