Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016528

Physical Location & Seq

Genomic Coordinates Reverse (-)

7258108 .. 7258353

Gene Structure 246 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g13192.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCTGACGGTGGTGAAGGGGATTGGGGCGTGGTCGGTGCATATGTTCATGATATTTTCGCTTAAACGACCTGACGTTCTTCCGGTGGGGGATTTGGGTGTGAGGAAAGGAGTCAAGATGTTGTATGGGTTGAAGGAGTTGCCTAAGCCTTTGGAGATGGAAGAGCTTTGTGAGAAGTGGAAACCTTATAGGTCTGTTGGGTCTTGGTACATGTGGAGGTACATTGAAGCCAAGGGGGTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

82

Amino Acids

9.42

Weight (kDa)

9.52

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	22 - 61	6.3e-06	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50880
fragaria_vesca	FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica	MD02G1146600.v1.1
prunus_persica	Prupe.7G155600_v2.0.a1
pyrus_communis	pycom15g22780
rosa_chinensis	RchiOBHm_Chr2g0101401
rosa_laevigata	RLG00000017075
rosa_rugosa	Rorug02G0098500
rosa_samantha	Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana	Rw2G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	209, 221
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	133, 227
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	25
BccI	CCATC	1 cut(s)	151
Bpu10I	CCTNAGC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	10
Bst6I	CTCTTC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	214
CciI	TCATGA	1 cut(s)	48
Csp6I	GTAC	2 cut(s)	208, 220
CviAII	CATG	2 cut(s)	49, 211
CviJI	RGCY	3 cut(s)	148, 166, 230
CviKI_1	RGCY	3 cut(s)	148, 166, 230
CviQI	GTAC	2 cut(s)	208, 220
DdeI	CTNAG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	52, 214
FaiI	YATR	6 cut(s)	42, 44, 50, 126, 189, 212
FalI	AAGNNNNNCTT	1 cut(s)	224
FatI	CATG	2 cut(s)	48, 210
FauNDI	CATATG	1 cut(s)	42
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	2 cut(s)	52, 214
HinfI	GANTC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	49, 115
HpyAV	CCTTC	2 cut(s)	10, 127
HpyCH4III	ACNGT	1 cut(s)	10
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	52, 214
LguI	GCTCTTC	1 cut(s)	156
LpnPI	CCDG	2 cut(s)	84, 96
MaeII	ACGT	1 cut(s)	75
MboII	GAAGA	2 cut(s)	71, 173
MlyI	GAGTC	1 cut(s)	120
MnlI	CCTC	2 cut(s)	96, 210
MseI	TTAA	1 cut(s)	63
MspI	CCGG	1 cut(s)	83
NdeI	CATATG	1 cut(s)	42
NlaIII	CATG	2 cut(s)	52, 214
NspI	RCATGY	1 cut(s)	214
PagI	TCATGA	1 cut(s)	48
PciI	ACATGT	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PscI	ACATGT	1 cut(s)	210
RsaI	GTAC	2 cut(s)	209, 221
RsaNI	GTAC	2 cut(s)	208, 220
SapI	GCTCTTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	63
SchI	GAGTC	1 cut(s)	120
SetI	ASST	6 cut(s)	73, 78, 168, 187, 194, 221
SgeI	CNNG	7 cut(s)	42, 61, 83, 95, 127, 216, 223
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	10
TaiI	ACGT	1 cut(s)	78
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TspDTI	ATGAA	1 cut(s)	37
XceI	RCATGY	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.