FvH4_1g13180

DNA-3-methyladenine glycosylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016528
Physical Location & Seq
Reverse (-)
7247722 .. 7249792
2071 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13180.t1

Sequence Viewer

Length: 786 bp
ATGGCCAAGCGATCCAAACCCCAGACCCAGATTCCCGAAAACCCCTCAACTTCATCCAAAATCCCATTCCGACCCCAAAAAATCCTAAAACTCACCACCACCACCACCACCAAGCTCACCATCCAAACTTCCCCGGAAATCCCCAAAATTCTAAACCCATTAACCTCCAATTCCGAAATTACCCTCGCCCTAAATCACTTACGGAGCTCCGACCCGAAACTTGCGTCCCTGATCGACTCCTACACCCCGCCGTCCTTCGATTCCGACCGCCCGCCCTTCCAATCCCTCGCGCGAAGCATTCTCTACCAGCAGCTCGCCACCAAGGCCGCCCAGTCGATCTACACGCGCTTCGTCACGCTCTGCGGCGGCGAGTCGTCGATTCTCCCCAAAACTCTCCTCAATCTCTCCCCCCAGACTCTCCGGCAAATCGGAGTTTCGGGCCGGAAGGCGTCTTATCTCCATGACTTGGCTGAGAAGTTTAGTGATGGGACTTTGTCGGATTCGGGGATTAAGGAAATGGACGACGAGTCGTTGCTGACGATGCTGACGGTGGTGAAGGGGATTGGGGCGTGGTCGGTGCATATGTTCATGATATTTTCGCTTAAACGACCTGACGTTCTTCCGGTGGGGGATTTGGGTGTGAGGAAAGGAGTCAAGATGTTGTATGGGTTGAAGGAGTTGCCTAAGCCTTTGGAGATGGAAGAGCTTTGTGAGAAGTGGAAACCTTATAGGTCTGTTGGGTCTTGGTACATGTGGAGGTACATGGAAGCCAAGGGGGTCTTGTAG

Protein Analysis

262

Amino Acids

29.19

Weight (kDa)

9.52

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HhH-GPD PF00730 98 - 241 7.4e-23 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50880
fragaria_vesca FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica MD02G1146600.v1.1
prunus_persica Prupe.7G155600_v2.0.a1
pyrus_communis pycom15g22780
rosa_chinensis RchiOBHm_Chr2g0101401
rosa_laevigata RLG00000017075
rosa_rugosa Rorug02G0098500
rosa_samantha Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana Rw2G011430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AccII CGCG 3 cut(s) 290, 292, 346
AciI CCGC 6 cut(s) 248, 268, 272, 327, 363, 366
AclWI GGATC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 2 cut(s) 749, 761
AfiI CCNNNNNNNGG 1 cut(s) 466
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 1 cut(s) 673
AhdI GACNNNNNGTC 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 4 cut(s) 115, 207, 313, 706
AluI AGCT 4 cut(s) 115, 207, 313, 706
Alw21I GWGCWC 1 cut(s) 209
AlwI GGATC 1 cut(s) 6
AoxI GGCC 3 cut(s) 3, 324, 439
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 147
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspLEI GCGC 2 cut(s) 292, 348
AspS9I GGNCC 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 85, 109, 565
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 322
BccI CCATC 3 cut(s) 128, 479, 691
BceAI ACGGC 1 cut(s) 235
BcnI CCSGG 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 4 cut(s) 311, 327, 364, 367
BlsI GCNGC 4 cut(s) 312, 328, 365, 368
Bme1390I CCNGG 1 cut(s) 134
BmeRI GACNNNNNGTC 1 cut(s) 526
BmgT120I GGNCC 1 cut(s) 439
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 531
BmuI ACTGGG 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 684
BpuMI CCSGG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 3 cut(s) 132, 321, 771
BsaWI WCCGGW 1 cut(s) 622
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 331
BseDI CCNNGG 3 cut(s) 132, 321, 771
BseGI GGATG 2 cut(s) 53, 120
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 1 cut(s) 322
Bsh1236I CGCG 3 cut(s) 290, 292, 346
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 3 cut(s) 5, 326, 441
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 1 cut(s) 209
BsiSI CCGG 4 cut(s) 134, 421, 442, 623
BslFI GGGAC 2 cut(s) 211, 502
BslI CCNNNNNNNGG 1 cut(s) 466
BsmFI GGGAC 2 cut(s) 211, 502
BsmI GAATGC 1 cut(s) 297
BsnI GGCC 3 cut(s) 5, 326, 441
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 3 cut(s) 11, 231, 336
BspACI CCGC 6 cut(s) 248, 268, 272, 327, 363, 366
BspANI GGCC 3 cut(s) 5, 326, 441
BspCNI CTCAG 1 cut(s) 463
BspFNI CGCG 3 cut(s) 290, 292, 346
BspHI TCATGA 1 cut(s) 588
BspPI GGATC 1 cut(s) 6
BspQI GCTCTTC 1 cut(s) 696
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 3 cut(s) 132, 321, 771
BssMI GATC 3 cut(s) 11, 231, 336
BssNI GRCGYC 1 cut(s) 449
BssT1I CCWWGG 2 cut(s) 321, 771
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 1 cut(s) 696
BstACI GRCGYC 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 272, 315
BstDEI CTNAG 2 cut(s) 471, 684
BstF5I GGATG 2 cut(s) 53, 120
BstFNI CGCG 3 cut(s) 290, 292, 346
BstHHI GCGC 2 cut(s) 292, 348
BstKTI GATC 3 cut(s) 14, 234, 339
BstMBI GATC 3 cut(s) 11, 231, 336
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 2 cut(s) 323, 541
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 1 cut(s) 132
BstUI CGCG 3 cut(s) 290, 292, 346
BstV1I GCAGC 1 cut(s) 322
BsuRI GGCC 3 cut(s) 5, 326, 441
BtsCI GGATG 2 cut(s) 53, 120
Cac8I GCNNGC 2 cut(s) 272, 315
CciI TCATGA 1 cut(s) 588
CfoI GCGC 2 cut(s) 292, 348
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 2 cut(s) 213, 438
Csp6I GTAC 2 cut(s) 748, 760
CviAII CATG 4 cut(s) 461, 589, 751, 763
CviQI GTAC 2 cut(s) 748, 760
DdeI CTNAG 2 cut(s) 471, 684
DpnI GATC 3 cut(s) 13, 233, 338
DpnII GATC 3 cut(s) 11, 231, 336
DriI GACNNNNNGTC 1 cut(s) 526
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 696
Eam1105I GACNNNNNGTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 696
Ecl136II GAGCTC 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 321, 771
Eco24I GRGCYC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 321, 771
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 2 cut(s) 321, 771
FaeI CATG 4 cut(s) 464, 592, 754, 766
FaiI YATR 8 cut(s) 462, 582, 584, 590, 666, 729, 752, 764
FalI AAGNNNNNCTT 1 cut(s) 764
FaqI GGGAC 2 cut(s) 211, 502
FatI CATG 4 cut(s) 460, 588, 750, 762
FauI CCCGC 2 cut(s) 255, 279
FauNDI CATATG 1 cut(s) 582
Fnu4HI GCNGC 4 cut(s) 311, 327, 364, 367
FokI GGATG 2 cut(s) 40, 107
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 4 cut(s) 311, 327, 364, 367
GlaI GCGC 2 cut(s) 291, 347
GluI GCNGC 4 cut(s) 311, 327, 364, 367
HaeIII GGCC 3 cut(s) 5, 326, 441
HapII CCGG 4 cut(s) 134, 421, 442, 623
HgaI GACGC 2 cut(s) 213, 438
HhaI GCGC 2 cut(s) 292, 348
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 4 cut(s) 464, 592, 754, 766
Hin6I GCGC 2 cut(s) 290, 346
HinP1I GCGC 2 cut(s) 290, 346
HinfI GANTC 9 cut(s) 31, 236, 260, 371, 379, 415, 500, 527, 651
HpaII CCGG 4 cut(s) 134, 421, 442, 623
HphI GGTGA 3 cut(s) 85, 109, 565
Hpy188I TCNGA 6 cut(s) 71, 175, 211, 265, 431, 499
Hpy188III TCNNGA 3 cut(s) 35, 589, 655
Hpy99I CGWCG 2 cut(s) 379, 527
HpyAV CCTTC 5 cut(s) 265, 286, 439, 550, 667
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 1 cut(s) 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 541
HpyF3I CTNAG 2 cut(s) 471, 684
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 4 cut(s) 464, 592, 754, 766
HspAI GCGC 2 cut(s) 290, 346
Kzo9I GATC 3 cut(s) 11, 231, 336
LguI GCTCTTC 1 cut(s) 696
LmnI GCTCC 2 cut(s) 204, 212
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 531
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 13, 233, 338
MboI GATC 3 cut(s) 11, 231, 336
MboII GAAGA 2 cut(s) 611, 713
MhlI GDGCHC 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 147, 169, 177
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 5 cut(s) 230, 380, 409, 536, 660
MmeI TCCRAC 4 cut(s) 94, 234, 288, 477
MnlI CCTC 7 cut(s) 55, 175, 194, 296, 407, 636, 750
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 161, 510, 603
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 134, 421, 442, 623
MspR9I CCNGG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 297
MvnI CGCG 3 cut(s) 290, 292, 346
MwoI GCNNNNNNNGC 2 cut(s) 323, 541
NciI CCSGG 1 cut(s) 134
NdeI CATATG 1 cut(s) 582
NdeII GATC 3 cut(s) 11, 231, 336
NlaIII CATG 4 cut(s) 464, 592, 754, 766
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 754
PagI TCATGA 1 cut(s) 588
PciI ACATGT 1 cut(s) 750
PciSI GCTCTTC 1 cut(s) 696
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PctI GAATGC 1 cut(s) 297
PfeI GAWTC 4 cut(s) 31, 260, 379, 500
PflFI GACNNNGTC 1 cut(s) 493
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 4 cut(s) 312, 328, 365, 368
PleI GAGTC 5 cut(s) 230, 379, 409, 535, 659
PpsI GAGTC 5 cut(s) 230, 379, 409, 535, 659
PscI ACATGT 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 209
PspPI GGNCC 1 cut(s) 439
PsyI GACNNNGTC 1 cut(s) 493
RsaI GTAC 2 cut(s) 749, 761
RsaNI GTAC 2 cut(s) 748, 760
SacI GAGCTC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 696
SaqAI TTAA 3 cut(s) 161, 510, 603
SatI GCNGC 4 cut(s) 311, 327, 364, 367
Sau3AI GATC 3 cut(s) 11, 231, 336
Sau96I GGNCC 1 cut(s) 439
SchI GAGTC 5 cut(s) 230, 380, 409, 536, 660
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 1 cut(s) 531
Sse9I AATT 3 cut(s) 147, 169, 177
SsiI CCGC 6 cut(s) 248, 268, 272, 327, 363, 366
SstI GAGCTC 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 321, 771
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 1 cut(s) 618
TaqI TCGA 4 cut(s) 234, 258, 335, 377
TasI AATT 3 cut(s) 147, 169, 177
TauI GCSGC 3 cut(s) 329, 366, 369
TfiI GAWTC 4 cut(s) 31, 260, 379, 500
Tru1I TTAA 3 cut(s) 161, 510, 603
Tru9I TTAA 3 cut(s) 161, 510, 603
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 2 cut(s) 42, 577
TspGWI ACGGA 1 cut(s) 217
Tth111I GACNNNGTC 1 cut(s) 493
Van91I CCANNNNNTGG 1 cut(s) 466
XapI RAATTY 1 cut(s) 147
XceI RCATGY 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.