Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016528

Physical Location & Seq

Genomic Coordinates Reverse (-)

12595900 .. 12596679

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCAAAGCGATCCAAACCTCAAACCCAAATTTCTGAAAACCCCTCAACTTCCTCCAAAATCCCATTCCGACCCCAAAAAATTCTAAAACTCTCCACGACCTCCAAGCTCACCGTCCAAATTTCCTCGGATTTGCCCAAAACCCTAAAACCATTGACCTCCCAATCCGGAATTACCCTCGCCCTCAACCACTTACGGAGCTCCGACCCGCAATTAGCGGCTCTGATCGACTCCTACAGCCCGCCGACGTTCGATTCCGACCGTCCACCGTTCCAATCACTCGCGCGAAGCATTCTGTACCAGCAACTCGCCACCAAAGCCGCCCAATCGATCTACGCCCGATTCGTCTCGCTCTGCGGCGGCGAGTCATCGATCCTCCCCGAAACTCTGCTCTCGCTTTCGGCCCAGAATCTCCGGCAAATCGGAGTTTCGGGCCGGAAAGCCTCTTATCTCCATGACCTGGCAGAGAAGTTCAGTGATGGGACTTTATCGGATTCGGCGATTCTCGAAATGGACGACGAGTCGTTGCTGACAATGCTGACGGTGGTGAAGGGAATTGGGGCTTGGTCGGTGCACATGTTTATGATCTTCGCGCTTAAACGACCTGACGTTCTGCCGGTGGGGGATCTTGGTGTGAGGAAAGGAGTGAAGCTGTTGTATGGTCTGAAGGAGTTGCCAAAGCCTTTGGAGATGGAGGAGGTGTGTGAGAAATGGAGGCCTTATAGGTCTGTTGGGTCTTGGTACATGTGGAGGTATATGGACGCCAAGGGGGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

260

Amino Acids

28.74

Weight (kDa)

9.41

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	96 - 239	1.3e-21	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50880
fragaria_vesca	FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica	MD02G1146600.v1.1
prunus_persica	Prupe.7G155600_v2.0.a1
pyrus_communis	pycom15g22780
rosa_chinensis	RchiOBHm_Chr2g0101401
rosa_laevigata	RLG00000017075
rosa_rugosa	Rorug02G0098500
rosa_samantha	Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana	Rw2G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	460
AccII	CGCG	3 cut(s)	284, 286, 593
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	6 cut(s)	209, 218, 242, 321, 357, 360
AclWI	GGATC	3 cut(s)	6, 367, 633
AcsI	RAATTY	3 cut(s)	30, 81, 120
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	762
AfaI	GTAC	2 cut(s)	299, 743
AfiI	CCNNNNNNNGG	1 cut(s)	460
AflIII	ACRYGT	2 cut(s)	576, 744
AhdI	GACNNNNNGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 547, 579
AluBI	AGCT	3 cut(s)	109, 201, 652
AluI	AGCT	3 cut(s)	109, 201, 652
Alw21I	GWGCWC	2 cut(s)	203, 576
Alw26I	GTCTC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	572
AlwI	GGATC	3 cut(s)	6, 367, 633
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	3 cut(s)	402, 433, 716
ApaLI	GTGCAC	1 cut(s)	572
ApoI	RAATTY	3 cut(s)	30, 81, 120
AspLEI	GCGC	2 cut(s)	286, 595
AspS9I	GGNCC	2 cut(s)	403, 433
AsuHPI	GGTGA	2 cut(s)	103, 559
BaeGI	GKGCMC	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	203, 576
BccI	CCATC	2 cut(s)	473, 685
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	4 cut(s)	219, 321, 358, 361
BlsI	GCNGC	4 cut(s)	220, 322, 359, 362
Bme1390I	CCNGG	1 cut(s)	461
BmeRI	GACNNNNNGTC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	403, 433
BmrFI	CCNGG	1 cut(s)	461
Bsa29I	ATCGAT	2 cut(s)	329, 371
BsaHI	GRCGYC	1 cut(s)	762
BsaJI	CCNNGG	2 cut(s)	126, 765
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	1 cut(s)	616
BseAI	TCCGGA	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	461
BseCI	ATCGAT	2 cut(s)	329, 371
BseDI	CCNNGG	2 cut(s)	126, 765
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	576
Bsh1236I	CGCG	3 cut(s)	284, 286, 593
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	3 cut(s)	404, 435, 718
BshVI	ATCGAT	2 cut(s)	329, 371
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	2 cut(s)	203, 576
BsiSI	CCGG	4 cut(s)	168, 415, 436, 617
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	3 cut(s)	404, 435, 718
Bsp1286I	GDGCHC	2 cut(s)	203, 576
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
BspACI	CCGC	6 cut(s)	209, 218, 242, 321, 357, 360
BspANI	GGCC	3 cut(s)	404, 435, 718
BspDI	ATCGAT	2 cut(s)	329, 371
BspEI	TCCGGA	1 cut(s)	167
BspFNI	CGCG	3 cut(s)	284, 286, 593
BspPI	GGATC	3 cut(s)	6, 367, 633
BsrFI	RCCGGY	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	616
BssECI	CCNNGG	2 cut(s)	126, 765
BssMI	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
BssNI	GRCGYC	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	4 cut(s)	115, 263, 270, 544
BstACI	GRCGYC	1 cut(s)	762
BstC8I	GCNNGC	1 cut(s)	242
BstFNI	CGCG	3 cut(s)	284, 286, 593
BstHHI	GCGC	2 cut(s)	286, 595
BstKTI	GATC	6 cut(s)	14, 228, 333, 375, 588, 628
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 535
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	2 cut(s)	580, 748
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	3 cut(s)	284, 286, 593
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
Bsu15I	ATCGAT	2 cut(s)	329, 371
BsuRI	GGCC	3 cut(s)	404, 435, 718
BsuTUI	ATCGAT	2 cut(s)	329, 371
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	2 cut(s)	286, 595
Cfr10I	RCCGGY	1 cut(s)	616
Cfr13I	GGNCC	2 cut(s)	403, 433
ClaI	ATCGAT	2 cut(s)	329, 371
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	2 cut(s)	298, 742
CviAII	CATG	3 cut(s)	455, 577, 745
CviQI	GTAC	2 cut(s)	298, 742
DpnI	GATC	6 cut(s)	13, 227, 332, 374, 587, 627
DpnII	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
DriI	GACNNNNNGTC	1 cut(s)	520
Eam1105I	GACNNNNNGTC	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	765
Eco147I	AGGCCT	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	765
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	765
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	3 cut(s)	458, 580, 748
FaiI	YATR	8 cut(s)	456, 578, 584, 660, 723, 746, 756, 758
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	3 cut(s)	454, 576, 744
FauI	CCCGC	2 cut(s)	216, 249
Fnu4HI	GCNGC	4 cut(s)	219, 321, 358, 361
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	219, 321, 358, 361
GlaI	GCGC	2 cut(s)	285, 594
GluI	GCNGC	4 cut(s)	219, 321, 358, 361
HaeIII	GGCC	3 cut(s)	404, 435, 718
HapII	CCGG	4 cut(s)	168, 415, 436, 617
HgaI	GACGC	1 cut(s)	770
HhaI	GCGC	2 cut(s)	286, 595
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	3 cut(s)	458, 580, 748
Hin6I	GCGC	2 cut(s)	284, 593
HinP1I	GCGC	2 cut(s)	284, 593
HinfI	GANTC	8 cut(s)	230, 254, 342, 365, 409, 494, 502, 521
HpaII	CCGG	4 cut(s)	168, 415, 436, 617
HphI	GGTGA	2 cut(s)	103, 559
Hpy166II	GTNNAC	2 cut(s)	266, 574
Hpy188I	TCNGA	9 cut(s)	37, 71, 130, 205, 225, 259, 425, 493, 666
Hpy188III	TCNNGA	2 cut(s)	168, 506
Hpy8I	GTNNAC	2 cut(s)	266, 574
Hpy99I	CGWCG	2 cut(s)	250, 521
HpyAV	CCTTC	2 cut(s)	544, 661
HpyCH4III	ACNGT	4 cut(s)	115, 263, 270, 544
HpyCH4IV	ACGT	2 cut(s)	248, 609
HpyCH4V	TGCA	1 cut(s)	574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 535
HpySE526I	ACGT	2 cut(s)	248, 609
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	3 cut(s)	458, 580, 748
HspAI	GCGC	2 cut(s)	284, 593
Kpn2I	TCCGGA	1 cut(s)	167
Kzo9I	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
LmnI	GCTCC	2 cut(s)	198, 206
LpnPI	CCDG	9 cut(s)	181, 314, 419, 428, 446, 449, 473, 618, 630
MaeII	ACGT	2 cut(s)	248, 609
MalI	GATC	6 cut(s)	13, 227, 332, 374, 587, 627
MboI	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
MboII	GAAGA	1 cut(s)	580
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	203, 576
MluCI	AATT	6 cut(s)	30, 81, 120, 171, 212, 555
MlyI	GAGTC	3 cut(s)	224, 374, 530
MmeI	TCCRAC	3 cut(s)	94, 228, 282
MroI	TCCGGA	1 cut(s)	167
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	4 cut(s)	168, 415, 436, 617
MspR9I	CCNGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	3 cut(s)	284, 286, 593
MwoI	GCNNNNNNNGC	2 cut(s)	317, 535
NdeII	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
NlaIII	CATG	3 cut(s)	458, 580, 748
NspI	RCATGY	2 cut(s)	580, 748
PceI	AGGCCT	1 cut(s)	718
PciI	ACATGT	2 cut(s)	576, 744
PcsI	WCGNNNNNNNCGW	3 cut(s)	342, 497, 513
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	5 cut(s)	254, 342, 409, 494, 502
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	220, 322, 359, 362
PleI	GAGTC	3 cut(s)	224, 373, 529
PpsI	GAGTC	3 cut(s)	224, 373, 529
PscI	ACATGT	2 cut(s)	576, 744
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	403, 433
PsuI	RGATCY	1 cut(s)	625
RsaI	GTAC	2 cut(s)	299, 743
RsaNI	GTAC	2 cut(s)	298, 742
RseI	CAYNNNNRTG	1 cut(s)	581
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	4 cut(s)	219, 321, 358, 361
Sau3AI	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
Sau96I	GGNCC	2 cut(s)	403, 433
SchI	GAGTC	3 cut(s)	224, 374, 530
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	203, 576
SfcI	CTRYAG	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	6 cut(s)	30, 81, 120, 171, 212, 555
SseBI	AGGCCT	1 cut(s)	718
SsiI	CCGC	6 cut(s)	209, 218, 242, 321, 357, 360
SstI	GAGCTC	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	718
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	4 cut(s)	115, 263, 270, 544
TaiI	ACGT	2 cut(s)	251, 612
TaqI	TCGA	5 cut(s)	228, 252, 329, 371, 507
TasI	AATT	6 cut(s)	30, 81, 120, 171, 212, 555
TauI	GCSGC	4 cut(s)	221, 323, 360, 363
TfiI	GAWTC	5 cut(s)	254, 342, 409, 494, 502
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	481
Van91I	CCANNNNNTGG	1 cut(s)	460
VneI	GTGCAC	1 cut(s)	572
XapI	RAATTY	3 cut(s)	30, 81, 120
XceI	RCATGY	2 cut(s)	580, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.