Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016528

Physical Location & Seq

Genomic Coordinates Reverse (-)

11529578 .. 11530792

Gene Structure 1215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G011430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGACTATGTTGGGCCAGGCTCAAAATTAAGTCCCGCGGGTCATATAATAACGACACCAGTAGTACGACAACGTCCTCCCCGCTACCGTTTCTTCATCGCCACCATTGCTTATTCACCTCACCGCCGATTCTCAACTCTCCCTCCCTCTCTCTCCATGGCAAAGCGATCCAAACCCCAAACCCAAATTTCTGAAAACCCCTCAACTTCCTCCAAAATCCCATTCCGACCCCAAAAAATTCTAAAACTCTCCACCACCACCAAGCTCACCGTCCAAATTTCCTCGGATTTGCCCAAAACCCTAAAACCATTAACTTCCCAATCCGACATTACCCTCGCCCTAAACCACTTACGGAGCTCCGACCCGCAATTAGCGGCTCTGATCGACTCCTACAGCCCGCCGACGTTCGATTCCGACCGTCCACCGTTCCAATCACTCGCGCGAAGCATTCTGTACCAGCAACTCGCCACCAAAGCCGCCCAATCGATCTACGCCCGATTCGTCTCGCTCTGCGGCGGCGAGTCATCGATCCTCCCCGAAACTCTGCTCTCGCTTTCGGCCCAGAATCTCCGGCAAATCGGAGTTTCGGGCCGGAAAGCCTCTTATCTCCATGACCTGGCAGAGAAGTTCAGTGATGGGACTTTATCGGATTCGGCGATTCTGGAAATGGACGACGAGTCGTTGCTGACAATGCTGACGGTGGTCAAGGGAATTGGGGCTTGGTCGGTGCACATGTTTATGATCTTCTCGCTTAAACGACCTGACGTTCTGCCGGTGGGTGATCTTGGTGTGAGGAAAGCAGTGAAGCTGTTGTATGGTCTGAAGGAGTTGCCAAAGCCTTTGGAGATGGAGGAGGTGTGTGAGAAATGGAGGCCTTATAGGTCTGTTGGGTCTTGGTACATGTGGAGGTATATGGAAGCCAAGGGGGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

311

Amino Acids

34.68

Weight (kDa)

9.69

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	148 - 291	2e-21	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50880
fragaria_vesca	FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica	MD02G1146600.v1.1
prunus_persica	Prupe.7G155600_v2.0.a1
pyrus_communis	pycom15g22780
rosa_chinensis	RchiOBHm_Chr2g0101401
rosa_laevigata	RLG00000017075
rosa_rugosa	Rorug02G0098500
rosa_samantha	Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana	Rw2G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccII	CGCG	3 cut(s)	38, 440, 442
AclWI	GGATC	2 cut(s)	162, 523
AcsI	RAATTY	3 cut(s)	186, 237, 276
AcuI	CTGAAG	1 cut(s)	842
AfaI	GTAC	3 cut(s)	66, 455, 899
AfiI	CCNNNNNNNGG	1 cut(s)	616
AflIII	ACRYGT	2 cut(s)	732, 900
AhdI	GACNNNNNGTC	1 cut(s)	676
AjnI	CCWGG	2 cut(s)	16, 615
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 703, 735
AluBI	AGCT	3 cut(s)	265, 357, 808
AluI	AGCT	3 cut(s)	265, 357, 808
Alw21I	GWGCWC	2 cut(s)	359, 732
Alw26I	GTCTC	1 cut(s)	508
Alw44I	GTGCAC	1 cut(s)	728
AlwI	GGATC	2 cut(s)	162, 523
AoxI	GGCC	4 cut(s)	14, 558, 589, 872
ApaLI	GTGCAC	1 cut(s)	728
ApoI	RAATTY	3 cut(s)	186, 237, 276
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	3 cut(s)	14, 559, 589
AsuHPI	GGTGA	4 cut(s)	108, 113, 259, 791
BaeGI	GKGCMC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	359
Bbv12I	GWGCWC	2 cut(s)	359, 732
BccI	CCATC	2 cut(s)	629, 841
BciT130I	CCWGG	2 cut(s)	18, 617
BcoDI	GTCTC	1 cut(s)	508
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	4 cut(s)	375, 477, 514, 517
BlsI	GCNGC	4 cut(s)	376, 478, 515, 518
Bme1390I	CCNGG	2 cut(s)	18, 617
BmeRI	GACNNNNNGTC	1 cut(s)	676
BmgT120I	GGNCC	3 cut(s)	14, 559, 589
BmrFI	CCNGG	2 cut(s)	18, 617
BoxI	GACNNNNGTC	1 cut(s)	701
Bsa29I	ATCGAT	2 cut(s)	485, 527
BsaJI	CCNNGG	4 cut(s)	36, 156, 282, 921
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 842, 872
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse118I	RCCGGY	1 cut(s)	772
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	18, 617
BseCI	ATCGAT	2 cut(s)	485, 527
BseDI	CCNNGG	4 cut(s)	36, 156, 282, 921
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMI	GCAATG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	866
BseSI	GKGCMC	1 cut(s)	732
Bsh1236I	CGCG	3 cut(s)	38, 440, 442
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	4 cut(s)	16, 560, 591, 874
BshVI	ATCGAT	2 cut(s)	485, 527
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	2 cut(s)	359, 732
BsiSI	CCGG	3 cut(s)	571, 592, 773
BslFI	GGGAC	2 cut(s)	18, 652
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	508
BsmBI	CGTCTC	1 cut(s)	508
BsmFI	GGGAC	2 cut(s)	18, 652
BsmI	GAATGC	1 cut(s)	447
BsnI	GGCC	4 cut(s)	16, 560, 591, 874
Bsp1286I	GDGCHC	2 cut(s)	359, 732
Bsp143I	GATC	6 cut(s)	167, 381, 486, 528, 741, 781
Bsp19I	CCATGG	1 cut(s)	156
BspANI	GGCC	4 cut(s)	16, 560, 591, 874
BspDI	ATCGAT	2 cut(s)	485, 527
BspFNI	CGCG	3 cut(s)	38, 440, 442
BspPI	GGATC	2 cut(s)	162, 523
BsrDI	GCAATG	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	772
BsrI	ACTGG	1 cut(s)	59
BssAI	RCCGGY	1 cut(s)	772
BssECI	CCNNGG	4 cut(s)	36, 156, 282, 921
BssMI	GATC	6 cut(s)	167, 381, 486, 528, 741, 781
BssT1I	CCWWGG	2 cut(s)	156, 921
Bst2UI	CCWGG	2 cut(s)	18, 617
Bst4CI	ACNGT	5 cut(s)	89, 271, 419, 426, 700
BstC8I	GCNNGC	1 cut(s)	398
BstDSI	CCRYGG	2 cut(s)	36, 156
BstFNI	CGCG	3 cut(s)	38, 440, 442
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	6 cut(s)	170, 384, 489, 531, 744, 784
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	6 cut(s)	167, 381, 486, 528, 741, 781
BstMCI	CGRYCG	1 cut(s)	418
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 473, 691
BstNI	CCWGG	2 cut(s)	18, 617
BstNSI	RCATGY	2 cut(s)	736, 904
BstPAI	GACNNNNGTC	1 cut(s)	701
BstSCI	CCNGG	2 cut(s)	16, 615
BstSFI	CTRYAG	1 cut(s)	391
BstSLI	GKGCMC	1 cut(s)	732
BstUI	CGCG	3 cut(s)	38, 440, 442
Bsu15I	ATCGAT	2 cut(s)	485, 527
BsuRI	GGCC	4 cut(s)	16, 560, 591, 874
BsuTUI	ATCGAT	2 cut(s)	485, 527
BtgI	CCRYGG	2 cut(s)	36, 156
BtgZI	GCGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	2 cut(s)	637, 807
Cac8I	GCNNGC	1 cut(s)	398
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	772
Cfr13I	GGNCC	3 cut(s)	14, 559, 589
Cfr42I	CCGCGG	1 cut(s)	39
ClaI	ATCGAT	2 cut(s)	485, 527
Csp6I	GTAC	3 cut(s)	65, 454, 898
CviAII	CATG	4 cut(s)	157, 611, 733, 901
CviQI	GTAC	3 cut(s)	65, 454, 898
DpnI	GATC	6 cut(s)	169, 383, 488, 530, 743, 783
DpnII	GATC	6 cut(s)	167, 381, 486, 528, 741, 781
DriI	GACNNNNNGTC	1 cut(s)	676
Eam1105I	GACNNNNNGTC	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	156, 921
Eco147I	AGGCCT	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	842
EcoICRI	GAGCTC	1 cut(s)	357
EcoRII	CCWGG	2 cut(s)	16, 615
EcoT14I	CCWWGG	2 cut(s)	156, 921
EcoT38I	GRGCYC	1 cut(s)	359
ErhI	CCWWGG	2 cut(s)	156, 921
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	4 cut(s)	160, 614, 736, 904
FaqI	GGGAC	2 cut(s)	18, 652
FatI	CATG	4 cut(s)	156, 610, 732, 900
FauI	CCCGC	5 cut(s)	31, 43, 89, 372, 405
Fnu4HI	GCNGC	4 cut(s)	375, 477, 514, 517
FriOI	GRGCYC	1 cut(s)	359
Fsp4HI	GCNGC	4 cut(s)	375, 477, 514, 517
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	4 cut(s)	375, 477, 514, 517
HaeIII	GGCC	4 cut(s)	16, 560, 591, 874
HapII	CCGG	3 cut(s)	571, 592, 773
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	4 cut(s)	160, 614, 736, 904
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HinfI	GANTC	9 cut(s)	129, 386, 410, 498, 521, 565, 650, 658, 677
HpaII	CCGG	3 cut(s)	571, 592, 773
HphI	GGTGA	4 cut(s)	108, 113, 259, 791
Hpy166II	GTNNAC	2 cut(s)	422, 730
Hpy188III	TCNNGA	1 cut(s)	662
Hpy8I	GTNNAC	2 cut(s)	422, 730
Hpy99I	CGWCG	2 cut(s)	406, 677
HpyAV	CCTTC	1 cut(s)	817
HpyCH4III	ACNGT	5 cut(s)	89, 271, 419, 426, 700
HpyCH4IV	ACGT	3 cut(s)	73, 404, 765
HpyCH4V	TGCA	1 cut(s)	730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 473, 691
HpySE526I	ACGT	3 cut(s)	73, 404, 765
Hsp92II	CATG	4 cut(s)	160, 614, 736, 904
HspAI	GCGC	1 cut(s)	440
KspI	CCGCGG	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	167, 381, 486, 528, 741, 781
LmnI	GCTCC	2 cut(s)	354, 362
MaeII	ACGT	3 cut(s)	73, 404, 765
MalI	GATC	6 cut(s)	169, 383, 488, 530, 743, 783
MboI	GATC	6 cut(s)	167, 381, 486, 528, 741, 781
MboII	GAAGA	2 cut(s)	85, 736
MhlI	GDGCHC	2 cut(s)	359, 732
MluCI	AATT	6 cut(s)	26, 186, 237, 276, 368, 711
MlyI	GAGTC	3 cut(s)	380, 530, 686
MmeI	TCCRAC	4 cut(s)	250, 348, 384, 438
MseI	TTAA	3 cut(s)	29, 311, 753
MslI	CAYNNNNRTG	1 cut(s)	737
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	3 cut(s)	571, 592, 773
MspR9I	CCNGG	2 cut(s)	18, 617
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	18, 617
MvnI	CGCG	3 cut(s)	38, 440, 442
MwoI	GCNNNNNNNGC	3 cut(s)	107, 473, 691
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	6 cut(s)	167, 381, 486, 528, 741, 781
NlaIII	CATG	4 cut(s)	160, 614, 736, 904
NspI	RCATGY	2 cut(s)	736, 904
PceI	AGGCCT	1 cut(s)	874
PciI	ACATGT	2 cut(s)	732, 900
PcsI	WCGNNNNNNNCGW	2 cut(s)	498, 653
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	6 cut(s)	129, 410, 498, 565, 650, 658
PflFI	GACNNNGTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	616
PkrI	GCNGC	4 cut(s)	376, 478, 515, 518
PleI	GAGTC	3 cut(s)	380, 529, 685
PpsI	GAGTC	3 cut(s)	380, 529, 685
PscI	ACATGT	2 cut(s)	732, 900
PshAI	GACNNNNGTC	1 cut(s)	701
Psp124BI	GAGCTC	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	16, 615
PspGI	CCWGG	2 cut(s)	16, 615
PspPI	GGNCC	3 cut(s)	14, 559, 589
PsyI	GACNNNGTC	1 cut(s)	72
RsaI	GTAC	3 cut(s)	66, 455, 899
RsaNI	GTAC	3 cut(s)	65, 454, 898
RseI	CAYNNNNRTG	1 cut(s)	737
SacI	GAGCTC	1 cut(s)	359
SacII	CCGCGG	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	29, 311, 753
SatI	GCNGC	4 cut(s)	375, 477, 514, 517
Sau3AI	GATC	6 cut(s)	167, 381, 486, 528, 741, 781
Sau96I	GGNCC	3 cut(s)	14, 559, 589
SchI	GAGTC	3 cut(s)	380, 530, 686
ScrFI	CCNGG	2 cut(s)	18, 617
SduI	GDGCHC	2 cut(s)	359, 732
SfcI	CTRYAG	1 cut(s)	391
Sfr303I	CCGCGG	1 cut(s)	39
SgrBI	CCGCGG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	737
Sse9I	AATT	6 cut(s)	26, 186, 237, 276, 368, 711
SseBI	AGGCCT	1 cut(s)	874
SstI	GAGCTC	1 cut(s)	359
StuI	AGGCCT	1 cut(s)	874
StyD4I	CCNGG	2 cut(s)	16, 615
StyI	CCWWGG	2 cut(s)	156, 921
TaaI	ACNGT	5 cut(s)	89, 271, 419, 426, 700
TaiI	ACGT	3 cut(s)	76, 407, 768
TaqI	TCGA	4 cut(s)	384, 408, 485, 527
TasI	AATT	6 cut(s)	26, 186, 237, 276, 368, 711
TauI	GCSGC	4 cut(s)	377, 479, 516, 519
TfiI	GAWTC	6 cut(s)	129, 410, 498, 565, 650, 658
Tru1I	TTAA	3 cut(s)	29, 311, 753
Tru9I	TTAA	3 cut(s)	29, 311, 753
TscAI	CASTG	2 cut(s)	637, 807
TspDTI	ATGAA	1 cut(s)	85
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	2 cut(s)	637, 807
Tth111I	GACNNNGTC	1 cut(s)	72
Van91I	CCANNNNNTGG	1 cut(s)	616
VneI	GTGCAC	1 cut(s)	728
XapI	RAATTY	3 cut(s)	186, 237, 276
XceI	RCATGY	2 cut(s)	736, 904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.