Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0016528

Physical Location & Seq

Genomic Coordinates Reverse (-)

12113243 .. 12114034

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1146600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCCAAGCGTGCGAAACCTCAAATACAAACCCAAATTTCCGAAAACCCTTCCGTCTCCTCCAAAATCCCATTCCGACCCCGCAAAATCTTAAAAGTATCCAACACCCCCAACGCCGCCAAGCCCTCTCCCTCCTCCCCCGCGCTCCCCAAAACCCTAATCCCACTAACCTCCCAATCCGAAATCAATCTCGCCCTCCAACACTTGCGGAGTTCCGACCCGAATTTAACAGCCCTGATCGACTCCTACACCCCGCCGTCCTTCGATTCCAGCCGTCCACCTTTCATATCCCTTGCAAGAAGCATTATTTACCAGCAACTCGCCACCAAAGCCGCCCAATCGATCTACAACCGGTTTGTTTCGCTCTGCGGCGGCGAGGCCTCGGTGATTTCCGATGTCGTTTTGTCGCTCTCGGCCCAGCAGCTCAGGACAATCGGCATCTCGGCCCGAAAAGCTTCGTATCTTCACGACCTGGCCGAGAAGTACAGCGATGGAACTTTGTCCGATACGTCGATTCTCGAAATGGACGATGAGGCTCTGCTCACAATGCTGACTCTGGTGAAGGGAATTGGGGTTTGGTCGGTCCACATGTTCATGATTTTCTCGCTTCGCCGGCCGGACGTGCTTCCGATTGGCGATCTCAGCGTGAGGAAAGGAGTGAAGTTGTTGTATGGGTTGAAGGAGTTGCCGAAGCCGTGGGAGATGGACGAGCTGTGTGAGAAATGGAGGCCTTATAGGTCTGTTGGTTCATGGTACATGTGGAAGTACATGGAGGCCAAGGGGGTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

264

Amino Acids

29.3

Weight (kDa)

9.5

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	100 - 243	1.3e-17	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50880
fragaria_vesca	FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica	MD02G1146600.v1.1
prunus_persica	Prupe.7G155600_v2.0.a1
pyrus_communis	pycom15g22780
rosa_chinensis	RchiOBHm_Chr2g0101401
rosa_laevigata	RLG00000017075
rosa_rugosa	Rorug02G0098500
rosa_samantha	Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana	Rw2G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	143
AciI	CCGC	8 cut(s)	82, 117, 141, 208, 254, 333, 369, 372
AcoI	YGGCCR	3 cut(s)	3, 474, 614
AcsI	RAATTY	2 cut(s)	36, 223
AfaI	GTAC	3 cut(s)	485, 755, 767
AflIII	ACRYGT	2 cut(s)	588, 756
AgeI	ACCGGT	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	679
AjiI	CACGTC	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	471
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 559, 591
AluBI	AGCT	3 cut(s)	424, 455, 712
AluI	AGCT	3 cut(s)	424, 455, 712
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	8 cut(s)	3, 378, 414, 444, 474, 614, 728, 774
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	2 cut(s)	36, 223
AsiGI	ACCGGT	1 cut(s)	351
Asp700I	GAANNNNTTC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	145
AspS9I	GGNCC	3 cut(s)	415, 445, 583
AsuHPI	GGTGA	2 cut(s)	397, 571
AvaII	GGWCC	1 cut(s)	583
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	485, 697
BceAI	ACGGC	3 cut(s)	241, 258, 679
BciT130I	CCWGG	1 cut(s)	473
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	5 cut(s)	117, 333, 370, 373, 422
BlsI	GCNGC	5 cut(s)	118, 334, 371, 374, 423
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	1 cut(s)	583
BmgBI	CACGTC	1 cut(s)	622
BmgT120I	GGNCC	3 cut(s)	415, 445, 583
BmrFI	CCNGG	1 cut(s)	473
BmsI	GCATC	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	381, 695, 777
BsaWI	WCCGGW	1 cut(s)	351
Bse118I	RCCGGY	2 cut(s)	351, 612
BseBI	CCWGG	1 cut(s)	473
BseCI	ATCGAT	1 cut(s)	341
BseDI	CCNNGG	3 cut(s)	381, 695, 777
BseMII	CTCAG	2 cut(s)	439, 655
BseRI	GAGGAG	2 cut(s)	49, 124
BseX3I	CGGCCG	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	433
BseYI	CCCAGC	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	617
BshFI	GGCC	8 cut(s)	5, 380, 416, 446, 476, 616, 730, 776
BshTI	ACCGGT	1 cut(s)	351
BshVI	ATCGAT	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	617
BsiSI	CCGG	3 cut(s)	352, 613, 617
BsmAI	GTCTC	1 cut(s)	61
BsmBI	CGTCTC	1 cut(s)	61
BsnI	GGCC	8 cut(s)	5, 380, 416, 446, 476, 616, 730, 776
Bsp143I	GATC	3 cut(s)	237, 342, 637
BspACI	CCGC	8 cut(s)	82, 117, 141, 208, 254, 333, 369, 372
BspANI	GGCC	8 cut(s)	5, 380, 416, 446, 476, 616, 730, 776
BspCNI	CTCAG	2 cut(s)	438, 654
BspDI	ATCGAT	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	594
BsrFI	RCCGGY	2 cut(s)	351, 612
BssAI	RCCGGY	2 cut(s)	351, 612
BssECI	CCNNGG	3 cut(s)	381, 695, 777
BssMI	GATC	3 cut(s)	237, 342, 637
BssT1I	CCWWGG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	12, 614
BstDEI	CTNAG	2 cut(s)	425, 641
BstDSI	CCRYGG	1 cut(s)	695
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	3 cut(s)	240, 345, 640
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	3 cut(s)	237, 342, 637
BstMCI	CGRYCG	1 cut(s)	617
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 329, 452, 547, 613, 622, 642
BstNI	CCWGG	1 cut(s)	473
BstNSI	RCATGY	2 cut(s)	592, 760
BstSCI	CCNGG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	433
BstZI	CGGCCG	1 cut(s)	614
Bsu15I	ATCGAT	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	8 cut(s)	5, 380, 416, 446, 476, 616, 730, 776
BsuTUI	ATCGAT	1 cut(s)	341
BtgI	CCRYGG	1 cut(s)	695
BtgZI	GCGATG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	12, 614
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	1 cut(s)	145
Cfr10I	RCCGGY	2 cut(s)	351, 612
Cfr13I	GGNCC	3 cut(s)	415, 445, 583
ClaI	ATCGAT	1 cut(s)	341
Csp6I	GTAC	3 cut(s)	484, 754, 766
CspAI	ACCGGT	1 cut(s)	351
CviAII	CATG	5 cut(s)	589, 595, 750, 757, 769
CviQI	GTAC	3 cut(s)	484, 754, 766
DdeI	CTNAG	2 cut(s)	425, 641
DpnI	GATC	3 cut(s)	239, 344, 639
DpnII	GATC	3 cut(s)	237, 342, 637
EaeI	YGGCCR	3 cut(s)	3, 474, 614
EagI	CGGCCG	1 cut(s)	614
EclXI	CGGCCG	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	777
Eco147I	AGGCCT	2 cut(s)	380, 730
Eco47I	GGWCC	1 cut(s)	583
Eco52I	CGGCCG	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	777
ErhI	CCWWGG	1 cut(s)	777
Esp3I	CGTCTC	1 cut(s)	61
FaeI	CATG	5 cut(s)	592, 598, 753, 760, 772
FaiI	YATR	8 cut(s)	287, 590, 596, 672, 735, 751, 758, 770
FalI	AAGNNNNNCTT	1 cut(s)	770
FatI	CATG	5 cut(s)	588, 594, 749, 756, 768
FauI	CCCGC	3 cut(s)	89, 148, 261
Fnu4HI	GCNGC	5 cut(s)	117, 333, 370, 373, 422
Fsp4HI	GCNGC	5 cut(s)	117, 333, 370, 373, 422
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	5 cut(s)	117, 333, 370, 373, 422
GsaI	CCCAGC	1 cut(s)	421
HaeIII	GGCC	8 cut(s)	5, 380, 416, 446, 476, 616, 730, 776
HapII	CCGG	3 cut(s)	352, 613, 617
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	5 cut(s)	592, 598, 753, 760, 772
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	4 cut(s)	242, 266, 514, 553
HpaII	CCGG	3 cut(s)	352, 613, 617
HphI	GGTGA	2 cut(s)	397, 571
Hpy166II	GTNNAC	2 cut(s)	278, 586
Hpy188I	TCNGA	7 cut(s)	43, 77, 181, 217, 394, 505, 630
Hpy188III	TCNNGA	4 cut(s)	427, 467, 518, 595
Hpy8I	GTNNAC	2 cut(s)	278, 586
Hpy99I	CGWCG	1 cut(s)	514
HpyAV	CCTTC	4 cut(s)	60, 271, 556, 673
HpyCH4IV	ACGT	2 cut(s)	509, 621
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 329, 452, 547, 613, 622, 642
HpyF3I	CTNAG	2 cut(s)	425, 641
HpySE526I	ACGT	2 cut(s)	509, 621
Hsp92II	CATG	5 cut(s)	592, 598, 753, 760, 772
HspAI	GCGC	1 cut(s)	143
KroI	GCCGGC	1 cut(s)	612
KroNI	GCCGGC	1 cut(s)	614
Kzo9I	GATC	3 cut(s)	237, 342, 637
LmnI	GCTCC	1 cut(s)	150
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	447
MaeII	ACGT	2 cut(s)	509, 621
MalI	GATC	3 cut(s)	239, 344, 639
MboI	GATC	3 cut(s)	237, 342, 637
MboII	GAAGA	1 cut(s)	455
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	36, 223, 567
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	236, 547
MmeI	TCCRAC	4 cut(s)	100, 126, 223, 240
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	92, 227
MslI	CAYNNNNRTG	1 cut(s)	593
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	352, 613, 617
MspR9I	CCNGG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	473
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	7 cut(s)	11, 329, 452, 547, 613, 622, 642
NaeI	GCCGGC	1 cut(s)	614
NdeII	GATC	3 cut(s)	237, 342, 637
NgoMIV	GCCGGC	1 cut(s)	612
NlaIII	CATG	5 cut(s)	592, 598, 753, 760, 772
NmeAIII	GCCGAG	3 cut(s)	392, 422, 502
NspI	RCATGY	2 cut(s)	592, 760
PagI	TCATGA	1 cut(s)	594
PceI	AGGCCT	2 cut(s)	380, 730
PciI	ACATGT	2 cut(s)	588, 756
PcsI	WCGNNNNNNNCGW	2 cut(s)	474, 525
PdiI	GCCGGC	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	266, 514
PinAI	ACCGGT	1 cut(s)	351
PkrI	GCNGC	5 cut(s)	118, 334, 371, 374, 423
PleI	GAGTC	2 cut(s)	236, 547
PpsI	GAGTC	2 cut(s)	236, 547
PscI	ACATGT	2 cut(s)	588, 756
Psp6I	CCWGG	1 cut(s)	471
PspFI	CCCAGC	1 cut(s)	417
PspGI	CCWGG	1 cut(s)	471
PspPI	GGNCC	3 cut(s)	415, 445, 583
RsaI	GTAC	3 cut(s)	485, 755, 767
RsaNI	GTAC	3 cut(s)	484, 754, 766
RseI	CAYNNNNRTG	1 cut(s)	593
SaqAI	TTAA	2 cut(s)	92, 227
SatI	GCNGC	5 cut(s)	117, 333, 370, 373, 422
Sau3AI	GATC	3 cut(s)	237, 342, 637
Sau96I	GGNCC	3 cut(s)	415, 445, 583
SchI	GAGTC	2 cut(s)	236, 547
ScrFI	CCNGG	1 cut(s)	473
SfaNI	GCATC	1 cut(s)	447
SinI	GGWCC	1 cut(s)	583
SmiMI	CAYNNNNRTG	1 cut(s)	593
Sse9I	AATT	3 cut(s)	36, 223, 567
SseBI	AGGCCT	2 cut(s)	380, 730
SsiI	CCGC	8 cut(s)	82, 117, 141, 208, 254, 333, 369, 372
StuI	AGGCCT	2 cut(s)	380, 730
StyD4I	CCNGG	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	777
TaiI	ACGT	2 cut(s)	512, 624
TaqI	TCGA	5 cut(s)	240, 264, 341, 512, 519
TaqII	GACCGA	1 cut(s)	571
TasI	AATT	3 cut(s)	36, 223, 567
TatI	WGTACW	2 cut(s)	483, 765
TauI	GCSGC	4 cut(s)	119, 335, 372, 375
TfiI	GAWTC	2 cut(s)	266, 514
Tru1I	TTAA	2 cut(s)	92, 227
Tru9I	TTAA	2 cut(s)	92, 227
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	3 cut(s)	274, 583, 738
TspGWI	ACGGA	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	583
XapI	RAATTY	2 cut(s)	36, 223
XceI	RCATGY	2 cut(s)	592, 760
XmnI	GAANNNNTTC	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.