Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016528

Physical Location & Seq

Genomic Coordinates Reverse (-)

13004648 .. 13005427

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG152000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCAAAGCGATCCAAACCCCAAACCCAAATTTCTGAAAACCCCTCAACTTCCTCCAAAATCCCATTCCGACCCCAAAAAATTCTAAAACTCTCCACCACCACCAAGCTCACCGTCCAAATTTCCTCGGATTTGCCTAAAACCCTAAAACCATTAACTTCCCAATCCGAAATTACCCTCGCCCTAAACCACTTACGGAGCTCCGACCGGCAATTAGCGGCTCTGATCGACTCCTACAGCCCGCCGACGTTCGATTCCGACCGTCCACCGTTCCAATCACTCGCGCGAAGCATTCTGTACCAGCAACTCGCCACCAAAGCCGCCCAATCGATCTACGCCCGATTCGTCTCGCTCTGCGGCGGCGAGTCATCGATCCTCCCCGAAACTCTGCTCTCGCTTTCGGCCCAGAATCTCCGGCAAATCGGAGTTTCGGGCCGGAAAGCCTCTTATCTCCATGACCTGGCAGAGAAGTTCAGTGATGGGACTTTATCGGATTCGGCGATTCTCGAAATGGACGACGAGTCGTTGCTGACAATGCTGACGGTGGTCAAGGGAATTGGGGCTTGGTCGGTGCACATGTTTATGATCTTCTCGCTTAAACGACCTGACGTTCTGCCGGTGGGTGATCTTGGTGTGAGGAAAGCAGTGAAGCTGTTGTATGGTCTGAAGGAGTTGCCAAAGCCTTTGGAGATGGAGGAGGTGTGTGAGAAATGGAGGCCTTATAGGTCTGTTGGGTCTTGGTACATGTGGAGGTATATGGAAGCCAAGGGGGTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

259

Amino Acids

28.93

Weight (kDa)

9.41

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HhH-GPD	PF00730	96 - 239	1.2e-21	HhH-GPD superfamily base excision DNA repair protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50880
fragaria_vesca	FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica	MD02G1146600.v1.1
prunus_persica	Prupe.7G155600_v2.0.a1
pyrus_communis	pycom15g22780
rosa_chinensis	RchiOBHm_Chr2g0101401
rosa_laevigata	RLG00000017075
rosa_rugosa	Rorug02G0098500
rosa_samantha	Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana	Rw2G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	460
AccII	CGCG	2 cut(s)	284, 286
AciI	CCGC	5 cut(s)	218, 242, 321, 357, 360
AclWI	GGATC	2 cut(s)	6, 367
AcsI	RAATTY	3 cut(s)	30, 81, 120
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	2 cut(s)	299, 743
AfiI	CCNNNNNNNGG	1 cut(s)	460
AflIII	ACRYGT	2 cut(s)	576, 744
AhdI	GACNNNNNGTC	1 cut(s)	520
AjnI	CCWGG	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 547, 579
AluBI	AGCT	3 cut(s)	109, 201, 652
AluI	AGCT	3 cut(s)	109, 201, 652
Alw21I	GWGCWC	2 cut(s)	203, 576
Alw26I	GTCTC	1 cut(s)	352
Alw44I	GTGCAC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	6, 367
AoxI	GGCC	3 cut(s)	402, 433, 716
ApaLI	GTGCAC	1 cut(s)	572
ApoI	RAATTY	3 cut(s)	30, 81, 120
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	403, 433
AsuHPI	GGTGA	2 cut(s)	103, 635
BaeGI	GKGCMC	1 cut(s)	576
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	2 cut(s)	203, 576
BccI	CCATC	2 cut(s)	473, 685
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	352
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	4 cut(s)	219, 321, 358, 361
BlsI	GCNGC	4 cut(s)	220, 322, 359, 362
Bme1390I	CCNGG	1 cut(s)	461
BmeRI	GACNNNNNGTC	1 cut(s)	520
BmgT120I	GGNCC	2 cut(s)	403, 433
BmrFI	CCNGG	1 cut(s)	461
BoxI	GACNNNNGTC	1 cut(s)	545
Bsa29I	ATCGAT	2 cut(s)	329, 371
BsaJI	CCNNGG	2 cut(s)	126, 765
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	2 cut(s)	207, 616
BseBI	CCWGG	1 cut(s)	461
BseCI	ATCGAT	2 cut(s)	329, 371
BseDI	CCNNGG	2 cut(s)	126, 765
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	576
Bsh1236I	CGCG	2 cut(s)	284, 286
Bsh1285I	CGRYCG	2 cut(s)	208, 262
BshFI	GGCC	3 cut(s)	404, 435, 718
BshVI	ATCGAT	2 cut(s)	329, 371
BsiEI	CGRYCG	2 cut(s)	208, 262
BsiHKAI	GWGCWC	2 cut(s)	203, 576
BsiSI	CCGG	4 cut(s)	208, 415, 436, 617
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	1 cut(s)	352
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	3 cut(s)	404, 435, 718
Bsp1286I	GDGCHC	2 cut(s)	203, 576
Bsp143I	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
BspACI	CCGC	5 cut(s)	218, 242, 321, 357, 360
BspANI	GGCC	3 cut(s)	404, 435, 718
BspDI	ATCGAT	2 cut(s)	329, 371
BspFNI	CGCG	2 cut(s)	284, 286
BspPI	GGATC	2 cut(s)	6, 367
BsrFI	RCCGGY	2 cut(s)	207, 616
BssAI	RCCGGY	2 cut(s)	207, 616
BssECI	CCNNGG	2 cut(s)	126, 765
BssMI	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
BssT1I	CCWWGG	1 cut(s)	765
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	4 cut(s)	115, 263, 270, 544
BstC8I	GCNNGC	1 cut(s)	242
BstFNI	CGCG	2 cut(s)	284, 286
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	6 cut(s)	14, 228, 333, 375, 588, 628
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
BstMCI	CGRYCG	2 cut(s)	208, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 535
BstNI	CCWGG	1 cut(s)	461
BstNSI	RCATGY	2 cut(s)	580, 748
BstPAI	GACNNNNGTC	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	576
BstUI	CGCG	2 cut(s)	284, 286
Bsu15I	ATCGAT	2 cut(s)	329, 371
BsuRI	GGCC	3 cut(s)	404, 435, 718
BsuTUI	ATCGAT	2 cut(s)	329, 371
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	2 cut(s)	481, 651
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	2 cut(s)	207, 616
Cfr13I	GGNCC	2 cut(s)	403, 433
ClaI	ATCGAT	2 cut(s)	329, 371
Csp6I	GTAC	2 cut(s)	298, 742
CviAII	CATG	3 cut(s)	455, 577, 745
CviQI	GTAC	2 cut(s)	298, 742
DpnI	GATC	6 cut(s)	13, 227, 332, 374, 587, 627
DpnII	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
DriI	GACNNNNNGTC	1 cut(s)	520
Eam1105I	GACNNNNNGTC	1 cut(s)	520
Ecl136II	GAGCTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	765
Eco147I	AGGCCT	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	686
EcoICRI	GAGCTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	765
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	765
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	3 cut(s)	458, 580, 748
FaiI	YATR	8 cut(s)	456, 578, 584, 660, 723, 746, 756, 758
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	3 cut(s)	454, 576, 744
FauI	CCCGC	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	219, 321, 358, 361
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	219, 321, 358, 361
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	4 cut(s)	219, 321, 358, 361
HaeIII	GGCC	3 cut(s)	404, 435, 718
HapII	CCGG	4 cut(s)	208, 415, 436, 617
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	458, 580, 748
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	8 cut(s)	230, 254, 342, 365, 409, 494, 502, 521
HpaII	CCGG	4 cut(s)	208, 415, 436, 617
HphI	GGTGA	2 cut(s)	103, 635
Hpy166II	GTNNAC	2 cut(s)	266, 574
Hpy188III	TCNNGA	1 cut(s)	506
Hpy8I	GTNNAC	2 cut(s)	266, 574
Hpy99I	CGWCG	2 cut(s)	250, 521
HpyAV	CCTTC	1 cut(s)	661
HpyCH4III	ACNGT	4 cut(s)	115, 263, 270, 544
HpyCH4IV	ACGT	2 cut(s)	248, 609
HpyCH4V	TGCA	1 cut(s)	574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 535
HpySE526I	ACGT	2 cut(s)	248, 609
Hsp92II	CATG	3 cut(s)	458, 580, 748
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
LmnI	GCTCC	2 cut(s)	198, 206
LpnPI	CCDG	9 cut(s)	221, 314, 419, 428, 446, 449, 473, 618, 630
MaeII	ACGT	2 cut(s)	248, 609
MalI	GATC	6 cut(s)	13, 227, 332, 374, 587, 627
MboI	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
MboII	GAAGA	1 cut(s)	580
MhlI	GDGCHC	2 cut(s)	203, 576
MluCI	AATT	6 cut(s)	30, 81, 120, 171, 212, 555
MlyI	GAGTC	3 cut(s)	224, 374, 530
MmeI	TCCRAC	3 cut(s)	94, 228, 282
MseI	TTAA	2 cut(s)	155, 597
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	4 cut(s)	208, 415, 436, 617
MspR9I	CCNGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	461
MvnI	CGCG	2 cut(s)	284, 286
MwoI	GCNNNNNNNGC	2 cut(s)	317, 535
NdeII	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
NlaIII	CATG	3 cut(s)	458, 580, 748
NspI	RCATGY	2 cut(s)	580, 748
PceI	AGGCCT	1 cut(s)	718
PciI	ACATGT	2 cut(s)	576, 744
PcsI	WCGNNNNNNNCGW	3 cut(s)	342, 497, 513
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	5 cut(s)	254, 342, 409, 494, 502
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	220, 322, 359, 362
PleI	GAGTC	3 cut(s)	224, 373, 529
PpsI	GAGTC	3 cut(s)	224, 373, 529
PscI	ACATGT	2 cut(s)	576, 744
PshAI	GACNNNNGTC	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	403, 433
RsaI	GTAC	2 cut(s)	299, 743
RsaNI	GTAC	2 cut(s)	298, 742
RseI	CAYNNNNRTG	1 cut(s)	581
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	155, 597
SatI	GCNGC	4 cut(s)	219, 321, 358, 361
Sau3AI	GATC	6 cut(s)	11, 225, 330, 372, 585, 625
Sau96I	GGNCC	2 cut(s)	403, 433
SchI	GAGTC	3 cut(s)	224, 374, 530
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	203, 576
SfcI	CTRYAG	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	581
Sse9I	AATT	6 cut(s)	30, 81, 120, 171, 212, 555
SseBI	AGGCCT	1 cut(s)	718
SsiI	CCGC	5 cut(s)	218, 242, 321, 357, 360
SstI	GAGCTC	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	718
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	765
TaaI	ACNGT	4 cut(s)	115, 263, 270, 544
TaiI	ACGT	2 cut(s)	251, 612
TaqI	TCGA	5 cut(s)	228, 252, 329, 371, 507
TasI	AATT	6 cut(s)	30, 81, 120, 171, 212, 555
TauI	GCSGC	4 cut(s)	221, 323, 360, 363
TfiI	GAWTC	5 cut(s)	254, 342, 409, 494, 502
Tru1I	TTAA	2 cut(s)	155, 597
Tru9I	TTAA	2 cut(s)	155, 597
TscAI	CASTG	2 cut(s)	481, 651
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	2 cut(s)	481, 651
Van91I	CCANNNNNTGG	1 cut(s)	460
VneI	GTGCAC	1 cut(s)	572
XapI	RAATTY	3 cut(s)	30, 81, 120
XceI	RCATGY	2 cut(s)	580, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.