Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0016528

Physical Location & Seq

Genomic Coordinates Reverse (-)

8209485 .. 8212786

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0098500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGGATGAGTGGAGGTTCAATCGGTTTAGAGACCCTTTGGGGGTTGTGGGTGTGGTGGTTGTGTGGGGATCCGTTGTGTGGTTGCTGTTTCAGAATCTGAGCTTGTGTTGGTCTTTGAATGATGAAGAAAGGACTAAAGATTGCTGCGGAAACTTGGTTGCGGCGAGAGATCAAAGAGCTTTTGAAAAAGGCAAGCTCCTTATCACAGTTGGTGAGGAATCTGCTGCACTGAACCGAGAGCTCCAGTTATTGGAACAACAGTCTGCTTCTAGTGACCGTTTATCTGTGCTTGTCAATGAGACATTGCAGTTATATGACCGAAACTCTTTTCACGAGATGTTCCAGGAGATGGTTAAAACATCATCACAACTTGGGACGAAAACAGCAAAGCTGAAGACCAGAAAGGCTGAAGAAGCGAAACCGAATAAGATAGATAAGATCTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

150

Amino Acids

17.24

Weight (kDa)

7.68

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50880
fragaria_vesca	FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica	MD02G1146600.v1.1
prunus_persica	Prupe.7G155600_v2.0.a1
pyrus_communis	pycom15g22780
rosa_chinensis	RchiOBHm_Chr2g0101401
rosa_laevigata	RLG00000017075
rosa_rugosa	Rorug02G0098500
rosa_samantha	Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana	Rw2G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	253, 352
AciI	CCGC	2 cut(s)	150, 164
AclWI	GGATC	2 cut(s)	66, 79
AcuI	CTGAAG	2 cut(s)	416, 432
AfiI	CCNNNNNNNGG	4 cut(s)	43, 81, 253, 352
AgsI	TTSAA	3 cut(s)	22, 121, 188
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	5 cut(s)	105, 182, 199, 244, 394
AluI	AGCT	5 cut(s)	105, 182, 199, 244, 394
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	2 cut(s)	27, 296
AlwI	GGATC	2 cut(s)	66, 79
AlwNI	CAGNNNCTG	1 cut(s)	100
ApeKI	GCWGC	2 cut(s)	147, 227
AsuHPI	GGTGA	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	134, 214
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	27, 296
BfaI	CTAG	1 cut(s)	273
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	3 cut(s)	148, 165, 228
BlsI	GCNGC	3 cut(s)	149, 166, 229
Bme1390I	CCNGG	1 cut(s)	347
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 81, 253, 352
Bse1I	ACTGG	1 cut(s)	247
Bse3DI	GCAATG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	4 cut(s)	43, 81, 253, 352
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	134, 214
BsgI	GTGCAG	1 cut(s)	213
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	4 cut(s)	43, 81, 253, 352
BsmAI	GTCTC	2 cut(s)	27, 296
BsmFI	GGGAC	1 cut(s)	391
Bso31I	GGTCTC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	71, 172, 441
BspACI	CCGC	2 cut(s)	150, 164
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	2 cut(s)	66, 79
BspTNI	GGTCTC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	71, 172, 441
BssSI	CACGAG	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	211, 264, 281
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	3 cut(s)	74, 175, 444
BstMAI	GTCTC	2 cut(s)	27, 296
BstMBI	GATC	3 cut(s)	71, 172, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	134, 214
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	2 cut(s)	71, 441
BstYI	RGATCY	2 cut(s)	71, 441
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	100
CviJI	RGCY	6 cut(s)	105, 182, 199, 244, 394, 410
CviKI_1	RGCY	6 cut(s)	105, 182, 199, 244, 394, 410
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	73, 174, 443
DpnII	GATC	3 cut(s)	71, 172, 441
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	244
Eco57I	CTGAAG	2 cut(s)	416, 432
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	246
FaiI	YATR	2 cut(s)	316, 318
FaqI	GGGAC	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	148, 165, 228
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	148, 165, 228
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	3 cut(s)	148, 165, 228
GsuI	CTGGAG	1 cut(s)	230
HinfI	GANTC	2 cut(s)	97, 221
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	96, 102
Hpy188III	TCNNGA	1 cut(s)	335
HpyCH4III	ACNGT	3 cut(s)	211, 264, 281
HpyCH4V	TGCA	2 cut(s)	230, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	71, 172, 441
LmnI	GCTCC	2 cut(s)	204, 249
LpnPI	CCDG	4 cut(s)	260, 332, 359, 415
Lsp1109I	GCAGC	2 cut(s)	134, 214
MaeI	CTAG	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	3 cut(s)	73, 174, 443
MboI	GATC	3 cut(s)	71, 172, 441
MboII	GAAGA	3 cut(s)	140, 409, 425
MflI	RGATCY	2 cut(s)	71, 441
MhlI	GDGCHC	1 cut(s)	246
MnlI	CCTC	2 cut(s)	9, 211
MseI	TTAA	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	3 cut(s)	71, 172, 441
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	97, 221
PflMI	CCANNNNNTGG	2 cut(s)	253, 352
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	149, 166, 229
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	2 cut(s)	71, 441
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	148, 165, 228
Sau3AI	GATC	3 cut(s)	71, 172, 441
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	20, 107, 184, 201, 246, 396
SsiI	CCGC	2 cut(s)	150, 164
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	1 cut(s)	345
TaaI	ACNGT	3 cut(s)	211, 264, 281
TaqII	GACCGA	1 cut(s)	336
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	97, 221
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	2 cut(s)	147, 227
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	17, 141
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	237
Van91I	CCANNNNNTGG	2 cut(s)	253, 352
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.