Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016528

Physical Location & Seq

Genomic Coordinates Reverse (-)

16859009 .. 16859278

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGACGACGAGGCTCTGCTCACAATGCTGACTCTGGTGAAGGGAATTGGGGTTTGGTCGGTCCACATGTTCTTGATGTTTTCGCTTCCCCGGGCGGACGTGCTGCCGGTCGGCGATCTCGGCGTGAGGAAAGGAGTGAAGTTGTTGTATGGGTTGAAGGAGTTGCCGAAACCGTTGGAGATGGAGGAGCTGTGTGAGAAATGGAAACCTTATAGGTCTGTTGGGTCTTGGTACATGTGGAGGTACATGGAGGCCAAGGGGGTCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003824 GO:0003905 GO:0005488 GO:0005575 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006307 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008725 GO:0009987 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0032131 GO:0032991 GO:0032993 GO:0033554 GO:0034641 GO:0035510 GO:0043170 GO:0043412 GO:0043733 GO:0043916 GO:0044237 GO:0044238 GO:0044260 GO:0045007 GO:0046483 GO:0050896 GO:0051716 GO:0052820 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

HhH-GPD

Protein Analysis

90

Amino Acids

10.29

Weight (kDa)

7.83

Isoelectric Point (pI)

21.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50880
fragaria_vesca	FvH4_1g13180 FvH4_1g13180 FvH4_1g13192
malus_domestica	MD02G1146600.v1.1
prunus_persica	Prupe.7G155600_v2.0.a1
pyrus_communis	pycom15g22780
rosa_chinensis	RchiOBHm_Chr2g0101401
rosa_laevigata	RLG00000017075
rosa_rugosa	Rorug02G0098500
rosa_samantha	Rh2AG146600 Rh2BG152000 Rh2DG152100
rosa_wichuraiana	Rw2G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	95
AfaI	GTAC	2 cut(s)	233, 245
AflIII	ACRYGT	2 cut(s)	66, 234
AgsI	TTSAA	1 cut(s)	157
AjiI	CACGTC	1 cut(s)	100
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	61, 262
AsuC2I	CCSGG	2 cut(s)	91, 92
AsuHPI	GGTGA	1 cut(s)	49
AvaI	CYCGRG	1 cut(s)	90
AvaII	GGWCC	2 cut(s)	61, 262
BbvI	GCAGC	1 cut(s)	90
BccI	CCATC	1 cut(s)	175
BcnI	CCSGG	2 cut(s)	91, 92
BfmI	CTRYAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	91, 92
Bme18I	GGWCC	2 cut(s)	61, 262
BmeT110I	CYCGRG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	61, 262
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	2 cut(s)	91, 92
BpuMI	CCSGG	2 cut(s)	91, 92
BsaJI	CCNNGG	3 cut(s)	89, 90, 255
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bse118I	RCCGGY	1 cut(s)	106
BseDI	CCNNGG	3 cut(s)	89, 90, 255
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	254
BsiEI	CGRYCG	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	91, 107
BsnI	GGCC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	254
BspLI	GGNNCC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	89, 90, 255
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	174
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 120
BstNSI	RCATGY	2 cut(s)	70, 238
BstSCI	CCNGG	2 cut(s)	89, 90
BstSFI	CTRYAG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	254
BtrI	CACGTC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	61, 262
Cfr9I	CCCGGG	1 cut(s)	90
Csp6I	GTAC	2 cut(s)	232, 244
CviAII	CATG	3 cut(s)	67, 235, 247
CviJI	RGCY	3 cut(s)	14, 190, 254
CviKI_1	RGCY	3 cut(s)	14, 190, 254
CviQI	GTAC	2 cut(s)	232, 244
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	61, 262
Eco88I	CYCGRG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	70, 238, 250
FaiI	YATR	5 cut(s)	68, 150, 213, 236, 248
FatI	CATG	3 cut(s)	66, 234, 246
Fnu4HI	GCNGC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	2 cut(s)	91, 107
Hin1II	CATG	3 cut(s)	70, 238, 250
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	91, 107
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	34, 151
HpyCH4III	ACNGT	1 cut(s)	174
HpyCH4IV	ACGT	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 120
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	70, 238, 250
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	3 cut(s)	20, 104, 120
Lsp1109I	GCAGC	1 cut(s)	90
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	4, 120, 178, 234, 244
MspI	CCGG	2 cut(s)	91, 107
MspR9I	CCNGG	2 cut(s)	91, 92
MwoI	GCNNNNNNNGC	2 cut(s)	25, 120
NciI	CCSGG	2 cut(s)	91, 92
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	70, 238, 250
NlaIV	GGNNCC	1 cut(s)	263
NmeAIII	GCCGAG	1 cut(s)	99
NspI	RCATGY	2 cut(s)	70, 238
PciI	ACATGT	2 cut(s)	66, 234
PkrI	GCNGC	1 cut(s)	105
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	262
PscI	ACATGT	2 cut(s)	66, 234
Psp5II	RGGWCCY	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	2 cut(s)	61, 262
PspPPI	RGGWCCY	1 cut(s)	262
RsaI	GTAC	2 cut(s)	233, 245
RsaNI	GTAC	2 cut(s)	232, 244
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	2 cut(s)	61, 262
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	2 cut(s)	91, 92
SetI	ASST	5 cut(s)	102, 192, 211, 218, 245
SfcI	CTRYAG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	61, 262
SmaI	CCCGGG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	89, 90
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	174
TaiI	ACGT	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	45
TseI	GCWGC	1 cut(s)	103
TspMI	CCCGGG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	61, 262
XceI	RCATGY	2 cut(s)	70, 238
XmaI	CCCGGG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.