Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005298

Physical Location & Seq

Genomic Coordinates Reverse (-)

18938697 .. 18940428

Gene Structure 1732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G50960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATCCAGATGCAGTCAAATCGACTCTCTCGAATCTAGCATTTGGAAATGTAATGGCGGCTGCTGCAAGAAATTATCAAAAGGAAGTTCTTGCAAATGAGAAGGCGCAAGGATCAAATCCTGTTAATGAAGAGGTTGATCTTGATGAACTTATGGATGATCCAGAGCTAGAAAGATTGCACGCAGATAGGATTGCAGCACTAAAGAGAGAGGTTGAGAAGAGAGAATCGTTTAAAAGACAAGGGCATGGTGAATATCGAGAGGTGAGTGAAGGAGATTTCTTGGGTGAAGTCACCAGGAGTGAGAAAGTGATATGTCATTTCTACCATAAGGAATTTTACCGGTGCAAGATTATGGACAAGCATCTGAAAACTCTTGCACCTAGACATGTGGACACAAAGTTCATTAAAGTGGACGCAGAGAATGCTCCTTTCTTTGTCACGAAGCTTGCAATAAAGACTTTGCCTTGCGTTGTGCTTTTCAGCAAGGGAGTTGCGATGGATAGGCTAGTTGGGTTCCAGGATCTGGGAACCAAGGACGATTTCACAACGAATAAACTAGAGAACGTTCTTCTTAAAAAGGGAATGCTCAGCAAGAAGAAGAAAGAGGAAGATGATGAAGACGCCGAATATCAAGAGAGCATACGGAGGTCTGTTAGGTCTTCAGAGAATCTGGACTCTGATTCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007010 GO:0007017 GO:0007049 GO:0008092 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0015631 GO:0016043 GO:0016049 GO:0018130 GO:0019438 GO:0022402 GO:0030865 GO:0031122 GO:0032506 GO:0034404 GO:0034641 GO:0034654 GO:0040007 GO:0042455 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0048285 GO:0048487 GO:0051211 GO:0051301 GO:0055086 GO:0061640 GO:0071704 GO:0071840 GO:0097435 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

230

Amino Acids

26.26

Weight (kDa)

5.53

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	89 - 175	1e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50960 AT3G50960 AT5G66410
fragaria_vesca	FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_5g33310
malus_domestica	MD02G1141000.v1.1 MD15G1253500.v1.1
prunus_persica	Prupe.5G010500_v2.0.a1 Prupe.5G010500_v2.0.a1 Prupe.6G150600_v2.0.a1 Prupe.6G150600_v2.0.a1
pyrus_communis	pycom02g11100 pycom15g22330
rosa_chinensis	RchiOBHm_Chr2g0100611
rosa_laevigata	RLG00000016988
rosa_multiflora	Rmu_sc0000528.1_g000004 Rmu_sc0001497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142090
rosa_rugosa	Rorug02G0090200 Rorug02G0090300 Rorug02G0090400
rosa_samantha	Rh2AG139100 Rh2BG142400 Rh2CG144700 Rh2DG144100
rosa_wichuraiana	Rw2G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	526
AciI	CCGC	1 cut(s)	59
AclI	AACGTT	1 cut(s)	567
AclWI	GGATC	4 cut(s)	12, 121, 155, 531
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	648
AcyI	GRCGYC	1 cut(s)	624
AfiI	CCNNNNNNNGG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	388
AgeI	ACCGGT	1 cut(s)	342
AjnI	CCWGG	2 cut(s)	296, 519
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	2 cut(s)	169, 448
AluI	AGCT	2 cut(s)	169, 448
AlwI	GGATC	4 cut(s)	12, 121, 155, 531
AlwNI	CAGNNNCTG	1 cut(s)	526
ApeKI	GCWGC	3 cut(s)	62, 65, 197
ApoI	RAATTY	1 cut(s)	335
AsiGI	ACCGGT	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	109
AsuHPI	GGTGA	4 cut(s)	263, 277, 286, 299
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	627, 654
BbvI	GCAGC	3 cut(s)	49, 52, 209
BccI	CCATC	1 cut(s)	493
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	298, 521
BfaI	CTAG	5 cut(s)	38, 170, 384, 509, 560
BisI	GCNGC	4 cut(s)	60, 63, 66, 198
BlpI	GCTNAGC	1 cut(s)	590
BlsI	GCNGC	4 cut(s)	61, 64, 67, 199
Bme1390I	CCNGG	2 cut(s)	298, 521
BmiI	GGNNCC	3 cut(s)	6, 518, 532
BmrFI	CCNGG	2 cut(s)	298, 521
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	2 cut(s)	627, 654
Bpu1102I	GCTNAGC	1 cut(s)	590
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	1 cut(s)	526
Bse118I	RCCGGY	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	298, 521
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	604
BseXI	GCAGC	3 cut(s)	49, 52, 209
BshTI	ACCGGT	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	526
BsmI	GAATGC	2 cut(s)	430, 591
Bsp143I	GATC	5 cut(s)	4, 113, 139, 160, 523
Bsp1720I	GCTNAGC	1 cut(s)	590
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	603
BspLI	GGNNCC	3 cut(s)	6, 518, 532
BspPI	GGATC	4 cut(s)	12, 121, 155, 531
BsrFI	RCCGGY	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	5 cut(s)	4, 113, 139, 160, 523
BssNI	GRCGYC	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	298, 521
Bst6I	CTCTTC	2 cut(s)	126, 215
BstACI	GRCGYC	1 cut(s)	624
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	183, 450
BstDEI	CTNAG	1 cut(s)	590
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	5 cut(s)	7, 116, 142, 163, 526
BstMBI	GATC	5 cut(s)	4, 113, 139, 160, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 425
BstNI	CCWGG	2 cut(s)	298, 521
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	296, 519
BstV1I	GCAGC	3 cut(s)	49, 52, 209
BstV2I	GAAGAC	2 cut(s)	627, 654
BstX2I	RGATCY	2 cut(s)	4, 523
BstYI	RGATCY	2 cut(s)	4, 523
BtgZI	GCGATG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	183, 450
CaiI	CAGNNNCTG	1 cut(s)	526
CfoI	GCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	342
CseI	GACGC	2 cut(s)	425, 632
CspAI	ACCGGT	1 cut(s)	342
CviAII	CATG	2 cut(s)	248, 389
CviJI	RGCY	4 cut(s)	62, 169, 448, 508
CviKI_1	RGCY	4 cut(s)	62, 169, 448, 508
DdeI	CTNAG	1 cut(s)	590
DpnI	GATC	5 cut(s)	6, 115, 141, 162, 525
DpnII	GATC	5 cut(s)	4, 113, 139, 160, 523
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	2 cut(s)	126, 215
EarI	CTCTTC	2 cut(s)	126, 215
Eco130I	CCWWGG	1 cut(s)	534
Eco57I	CTGAAG	1 cut(s)	648
EcoRII	CCWGG	2 cut(s)	296, 519
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	2 cut(s)	251, 392
FaiI	YATR	7 cut(s)	155, 249, 316, 330, 356, 390, 644
FatI	CATG	2 cut(s)	247, 388
Fnu4HI	GCNGC	4 cut(s)	60, 63, 66, 198
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	4 cut(s)	60, 63, 66, 198
FspBI	CTAG	5 cut(s)	38, 170, 384, 509, 560
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	4 cut(s)	60, 63, 66, 198
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	2 cut(s)	425, 632
HhaI	GCGC	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	2 cut(s)	251, 392
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	6 cut(s)	25, 34, 227, 670, 677, 683
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	4 cut(s)	263, 277, 286, 299
Hpy166II	GTNNAC	2 cut(s)	394, 415
Hpy188I	TCNGA	4 cut(s)	369, 667, 682, 688
Hpy188III	TCNNGA	8 cut(s)	8, 31, 143, 164, 260, 442, 635, 674
Hpy8I	GTNNAC	2 cut(s)	394, 415
HpyAV	CCTTC	2 cut(s)	97, 266
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	8 cut(s)	14, 68, 95, 181, 197, 348, 380, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 425
HpyF3I	CTNAG	1 cut(s)	590
HpySE526I	ACGT	1 cut(s)	567
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	2 cut(s)	251, 392
HspAI	GCGC	1 cut(s)	107
Kzo9I	GATC	5 cut(s)	4, 113, 139, 160, 523
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	3 cut(s)	49, 52, 209
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	5 cut(s)	38, 170, 384, 509, 560
MaeII	ACGT	1 cut(s)	567
MaeIII	GTNAC	2 cut(s)	292, 439
MalI	GATC	5 cut(s)	6, 115, 141, 162, 525
MboI	GATC	5 cut(s)	4, 113, 139, 160, 523
MboII	GAAGA	8 cut(s)	143, 232, 563, 610, 613, 623, 632, 654
MflI	RGATCY	2 cut(s)	4, 523
MluCI	AATT	2 cut(s)	73, 335
MlyI	GAGTC	2 cut(s)	19, 671
MnlI	CCTC	5 cut(s)	127, 205, 256, 601, 642
MseI	TTAA	4 cut(s)	126, 234, 408, 576
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	1 cut(s)	343
MspR9I	CCNGG	2 cut(s)	298, 521
Mva1269I	GAATGC	2 cut(s)	430, 591
MvaI	CCWGG	2 cut(s)	298, 521
MwoI	GCNNNNNNNGC	2 cut(s)	65, 425
NdeII	GATC	5 cut(s)	4, 113, 139, 160, 523
NlaIII	CATG	2 cut(s)	251, 392
NlaIV	GGNNCC	3 cut(s)	6, 518, 532
NmuCI	GTSAC	2 cut(s)	292, 439
NspI	RCATGY	1 cut(s)	392
PciI	ACATGT	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	29
PctI	GAATGC	2 cut(s)	430, 591
PfeI	GAWTC	4 cut(s)	34, 227, 670, 683
PflMI	CCANNNNNTGG	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	519
PinAI	ACCGGT	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	61, 64, 67, 199
PleI	GAGTC	2 cut(s)	19, 671
PpsI	GAGTC	2 cut(s)	19, 671
PscI	ACATGT	1 cut(s)	388
Psp1406I	AACGTT	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	296, 519
PspGI	CCWGG	2 cut(s)	296, 519
PspN4I	GGNNCC	3 cut(s)	6, 518, 532
PstNI	CAGNNNCTG	1 cut(s)	526
PsuI	RGATCY	2 cut(s)	4, 523
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	126, 234, 408, 576
SatI	GCNGC	4 cut(s)	60, 63, 66, 198
Sau3AI	GATC	5 cut(s)	4, 113, 139, 160, 523
SchI	GAGTC	2 cut(s)	19, 671
ScrFI	CCNGG	2 cut(s)	298, 521
SetI	ASST	9 cut(s)	138, 171, 216, 267, 385, 450, 570, 653, 662
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	2 cut(s)	73, 335
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	5 cut(s)	38, 170, 384, 509, 560
StyD4I	CCNGG	2 cut(s)	296, 519
StyI	CCWWGG	1 cut(s)	534
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	3 cut(s)	23, 32, 259
TasI	AATT	2 cut(s)	73, 335
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	4 cut(s)	34, 227, 670, 683
Tru1I	TTAA	4 cut(s)	126, 234, 408, 576
Tru9I	TTAA	4 cut(s)	126, 234, 408, 576
TseFI	GTSAC	2 cut(s)	292, 439
TseI	GCWGC	3 cut(s)	62, 65, 197
Tsp45I	GTSAC	2 cut(s)	292, 439
TspDTI	ATGAA	4 cut(s)	144, 162, 394, 633
TspGWI	ACGGA	1 cut(s)	661
Van91I	CCANNNNNTGG	1 cut(s)	526
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	392
XspI	CTAG	5 cut(s)	38, 170, 384, 509, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.