Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005298

Physical Location & Seq

Genomic Coordinates Reverse (-)

24087690 .. 24089559

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATCCGGATGCAGTCAAATCCACTCTCCAAAACCTAGCCTTTGGAAATGTAATGGCCGCCGCTGCCCGCAATTACCAGAAGGAATTGCTCGCCGGGGAGAAAGCCCCCGCCACCAGCTCCGCCGACCAGGAGGTCGACCTTGACGAGCTCATGGATGATCCTGAGCTGGAAATATTGCACGCGGATCGCATCGCAGCGCTAAAGAGAGAAGCTGAGAAGAGGGAAGCGTTGAAGAGGCAAGGGCATGGAGAGTATAGGGAAATTACTGAGGGGGATTTCTTGGGGGAAGTTACCGGGAGTGAAAACACCATCTGCCACTTTTACCATAGAGAGTTTTATAGATGCAAGATAATGGATAAGCATTTGAAGACTCTTGCTTTAAAGCATGTTGATACCAAGTTTATCAAGCTGGATGCTGAGAATGCACCTTTCTTCGTCACCAAGCTAGGAGTCAAAACTCTGCCTTGTGTCGTAATATTCAGAAAAGGAGTTGCTGTGGATAGGCTGATTGGATTCATTGATATGGGTGGAAAAGATGATTTCAGCACAAGGGCACTTGAGGTTGTCCTAACCAAGAAAGGTATAATTAGTGAGAAGAAGGAAGAAGAAGACGAACATGATGATTATCTTGAAGGTGGTCGCAGGACAGTAAGATCCTCTGTGAATCATGATTCTGATTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007010 GO:0007017 GO:0007049 GO:0008092 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0015631 GO:0016043 GO:0016049 GO:0018130 GO:0019438 GO:0022402 GO:0030865 GO:0031122 GO:0032506 GO:0034404 GO:0034641 GO:0034654 GO:0040007 GO:0042455 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0048285 GO:0048487 GO:0051211 GO:0051301 GO:0055086 GO:0061640 GO:0071704 GO:0071840 GO:0097435 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

230

Amino Acids

25.77

Weight (kDa)

5.28

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50960 AT3G50960 AT5G66410
fragaria_vesca	FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_5g33310
malus_domestica	MD02G1141000.v1.1 MD15G1253500.v1.1
prunus_persica	Prupe.5G010500_v2.0.a1 Prupe.5G010500_v2.0.a1 Prupe.6G150600_v2.0.a1 Prupe.6G150600_v2.0.a1
pyrus_communis	pycom02g11100 pycom15g22330
rosa_chinensis	RchiOBHm_Chr2g0100611
rosa_laevigata	RLG00000016988
rosa_multiflora	Rmu_sc0000528.1_g000004 Rmu_sc0001497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142090
rosa_rugosa	Rorug02G0090200 Rorug02G0090300 Rorug02G0090400
rosa_samantha	Rh2AG139100 Rh2BG142400 Rh2CG144700 Rh2DG144100
rosa_wichuraiana	Rw2G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	6 cut(s)	60, 63, 70, 111, 123, 185
AclWI	GGATC	4 cut(s)	12, 155, 195, 651
AcoI	YGGCCR	1 cut(s)	57
AfeI	AGCGCT	1 cut(s)	201
AgsI	TTSAA	3 cut(s)	235, 370, 635
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	6 cut(s)	120, 151, 169, 215, 412, 448
AluI	AGCT	6 cut(s)	120, 151, 169, 215, 412, 448
Alw21I	GWGCWC	1 cut(s)	153
AlwI	GGATC	4 cut(s)	12, 155, 195, 651
Aor13HI	TCCGGA	1 cut(s)	7
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	2 cut(s)	65, 197
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	97, 298
AsuHPI	GGTGA	1 cut(s)	433
BaeGI	GKGCMC	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	153
BbsI	GAAGAC	2 cut(s)	377, 618
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	52, 209
BccI	CCATC	1 cut(s)	320
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	2 cut(s)	97, 298
BfaI	CTAG	2 cut(s)	38, 449
BfoI	RGCGCY	1 cut(s)	203
BisI	GCNGC	4 cut(s)	60, 63, 66, 198
BlsI	GCNGC	4 cut(s)	61, 64, 67, 199
Bme1390I	CCNGG	3 cut(s)	97, 131, 298
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	97, 131, 298
BmsI	GCATC	3 cut(s)	201, 335, 406
BpiI	GAAGAC	2 cut(s)	377, 618
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	2 cut(s)	97, 298
BsaBI	GATNNNNATC	1 cut(s)	627
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bse8I	GATNNNNATC	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	7
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	3 cut(s)	16, 163, 421
BseJI	GATNNNNATC	1 cut(s)	627
BseMII	CTCAG	4 cut(s)	156, 207, 261, 411
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	52, 209
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	8, 96, 297
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	153, 559
Bsp13I	TCCGGA	1 cut(s)	7
Bsp143I	GATC	4 cut(s)	4, 160, 187, 656
BspACI	CCGC	6 cut(s)	60, 63, 70, 111, 123, 185
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	4 cut(s)	157, 208, 262, 412
BspEI	TCCGGA	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	4 cut(s)	12, 155, 195, 651
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	4 cut(s)	4, 160, 187, 656
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	2 cut(s)	215, 230
BstC8I	GCNNGC	3 cut(s)	70, 93, 183
BstDEI	CTNAG	4 cut(s)	165, 216, 270, 420
BstF5I	GGATG	3 cut(s)	16, 163, 421
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	7, 163, 190, 659
BstMBI	GATC	4 cut(s)	4, 160, 187, 656
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 425
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	3 cut(s)	95, 129, 296
BstSLI	GKGCMC	1 cut(s)	559
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	52, 209
BstV2I	GAAGAC	2 cut(s)	377, 618
BstX2I	RGATCY	2 cut(s)	4, 656
BstYI	RGATCY	2 cut(s)	4, 656
BsuRI	GGCC	1 cut(s)	59
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	3 cut(s)	16, 163, 421
Cac8I	GCNNGC	3 cut(s)	70, 93, 183
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	202
CviAII	CATG	5 cut(s)	154, 248, 389, 620, 671
DdeI	CTNAG	4 cut(s)	165, 216, 270, 420
DpnI	GATC	4 cut(s)	6, 162, 189, 658
DpnII	GATC	4 cut(s)	4, 160, 187, 656
DraI	TTTAAA	1 cut(s)	384
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	215, 230
EarI	CTCTTC	2 cut(s)	215, 230
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco47III	AGCGCT	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	5 cut(s)	157, 251, 392, 623, 674
FatI	CATG	5 cut(s)	153, 247, 388, 619, 670
FauI	CCCGC	2 cut(s)	77, 118
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	60, 63, 66, 198
FokI	GGATG	3 cut(s)	23, 170, 428
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	4 cut(s)	60, 63, 66, 198
FspBI	CTAG	2 cut(s)	38, 449
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	4 cut(s)	60, 63, 66, 198
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	3 cut(s)	8, 96, 297
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	157, 251, 392, 623, 674
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	6 cut(s)	373, 453, 516, 667, 674, 680
HpaII	CCGG	3 cut(s)	8, 96, 297
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	485, 679, 685
Hpy188III	TCNNGA	4 cut(s)	8, 164, 632, 671
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	76, 595, 629
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4V	TGCA	4 cut(s)	14, 181, 348, 428
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 425
HpyF3I	CTNAG	4 cut(s)	165, 216, 270, 420
Hsp92II	CATG	5 cut(s)	157, 251, 392, 623, 674
HspAI	GCGC	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	4, 160, 187, 656
LmnI	GCTCC	1 cut(s)	125
Lsp1109I	GCAGC	2 cut(s)	52, 209
LweI	GCATC	3 cut(s)	201, 335, 406
MaeI	CTAG	2 cut(s)	38, 449
MaeIII	GTNAC	2 cut(s)	292, 439
MalI	GATC	4 cut(s)	6, 162, 189, 658
MboI	GATC	4 cut(s)	4, 160, 187, 656
MboII	GAAGA	8 cut(s)	232, 247, 382, 427, 610, 617, 620, 623
MflI	RGATCY	2 cut(s)	4, 656
MhlI	GDGCHC	2 cut(s)	153, 559
MluCI	AATT	4 cut(s)	73, 86, 264, 588
MlyI	GAGTC	2 cut(s)	367, 462
MnlI	CCTC	6 cut(s)	127, 216, 231, 265, 556, 670
MroI	TCCGGA	1 cut(s)	7
MseI	TTAA	1 cut(s)	383
MslI	CAYNNNNRTG	1 cut(s)	524
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	3 cut(s)	8, 96, 297
MspR9I	CCNGG	3 cut(s)	97, 131, 298
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	65, 425
NciI	CCSGG	2 cut(s)	97, 298
NdeII	GATC	4 cut(s)	4, 160, 187, 656
NlaIII	CATG	5 cut(s)	157, 251, 392, 623, 674
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	392
PagI	TCATGA	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	4 cut(s)	516, 667, 674, 680
PkrI	GCNGC	4 cut(s)	61, 64, 67, 199
PleI	GAGTC	2 cut(s)	367, 461
PpsI	GAGTC	2 cut(s)	367, 461
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	4, 656
RseI	CAYNNNNRTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	4 cut(s)	60, 63, 66, 198
Sau3AI	GATC	4 cut(s)	4, 160, 187, 656
SchI	GAGTC	2 cut(s)	367, 462
ScrFI	CCNGG	3 cut(s)	97, 131, 298
SduI	GDGCHC	2 cut(s)	153, 559
SfaNI	GCATC	3 cut(s)	201, 335, 406
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	4 cut(s)	73, 86, 264, 588
SsiI	CCGC	6 cut(s)	60, 63, 70, 111, 123, 185
SspI	AATATT	2 cut(s)	177, 480
SspMI	CTAG	2 cut(s)	38, 449
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	95, 129, 296
TaaI	ACNGT	1 cut(s)	652
TaqI	TCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	73, 86, 264, 588
TauI	GCSGC	2 cut(s)	62, 65
TfiI	GAWTC	4 cut(s)	516, 667, 674, 680
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	65, 197
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	2 cut(s)	38, 449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.