Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005298

Physical Location & Seq

Genomic Coordinates Forward (+)

26519437 .. 26521696

Gene Structure 2260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATCCGGATACGGTGAAGTCGACCCTCTCGAATCTGGCATTCGGGAATGTATTGGCGGCAGCTGCTAGAGATTATAAAAAGGAAGTTCTTGCAAATGAAAAGGCACAAGGATCAAGACCTGTCAACGAGGAAGTTGATCTTGACGAATTGATGGATGATCCAGAGCTAGAAAAGTTGCACGCAGATAGGATTGCAGCACTCAGGAGAGAAGTGGAAAAGAGAGAAGCATTCAAAAGACAAGGACATGGTGAATACCGAGAAGTTAGCGAAGGCGACTTCTTGGGAGAAGTCACAAGGAGTGAAAAAGTTATATGTCACTTCTACCACAAGGAGTTCTATCGCTGCAAGATAATGGACAAGCATTTGAAGACCCTTGCTCCTAGACATGTGGACACAAAGTTCATTAAGATGGACGCTGAGAACGCTCCCTTCTTCGTCACCAAGCTTGCAATCAAGACTTTGCCGTGTGTTATCCTTTTTAGCAAGGGAATCGCGATGGATAGGCTTGTCGGGTTTCAAGATCTAGGTGCCAAGGACGATTTCTCCACGACGAAGCTGGAGAATCTTCTGGTCAAGAAAGGAATGCTTAGTGAAAAGAGAAAAGAGGAAGATGAGGAAGATTACGAGTATCAAGAAAGCATACGTCGGTCCGTTAGGTCTTCAGCGAATGTCGACTCTGATTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007010 GO:0007017 GO:0007049 GO:0008092 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0015631 GO:0016043 GO:0016049 GO:0018130 GO:0019438 GO:0022402 GO:0030865 GO:0031122 GO:0032506 GO:0034404 GO:0034641 GO:0034654 GO:0040007 GO:0042455 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0048285 GO:0048487 GO:0051211 GO:0051301 GO:0055086 GO:0061640 GO:0071704 GO:0071840 GO:0097435 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

230

Amino Acids

26.37

Weight (kDa)

5.54

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	89 - 174	2.8e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50960 AT3G50960 AT5G66410
fragaria_vesca	FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_5g33310
malus_domestica	MD02G1141000.v1.1 MD15G1253500.v1.1
prunus_persica	Prupe.5G010500_v2.0.a1 Prupe.5G010500_v2.0.a1 Prupe.6G150600_v2.0.a1 Prupe.6G150600_v2.0.a1
pyrus_communis	pycom02g11100 pycom15g22330
rosa_chinensis	RchiOBHm_Chr2g0100611
rosa_laevigata	RLG00000016988
rosa_multiflora	Rmu_sc0000528.1_g000004 Rmu_sc0001497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142090
rosa_rugosa	Rorug02G0090200 Rorug02G0090300 Rorug02G0090400
rosa_samantha	Rh2AG139100 Rh2BG142400 Rh2CG144700 Rh2DG144100
rosa_wichuraiana	Rw2G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	530
AccI	GTMKAC	2 cut(s)	23, 675
AccII	CGCG	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	7
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	3 cut(s)	12, 121, 155
AcuI	CTGAAG	1 cut(s)	648
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	235, 370, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	4 cut(s)	65, 169, 448, 559
AluI	AGCT	4 cut(s)	65, 169, 448, 559
AlwI	GGATC	3 cut(s)	12, 121, 155
Aor13HI	TCCGGA	1 cut(s)	7
ApeKI	GCWGC	4 cut(s)	62, 65, 197, 345
AspS9I	GGNCC	1 cut(s)	651
AsuHPI	GGTGA	3 cut(s)	28, 263, 433
AvaII	GGWCC	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	530
BbsI	GAAGAC	2 cut(s)	377, 654
BbvI	GCAGC	4 cut(s)	52, 74, 209, 332
BccI	CCATC	3 cut(s)	148, 406, 493
BceAI	ACGGC	1 cut(s)	451
BcgI	CGANNNNNNTGC	2 cut(s)	475, 509
BciVI	GTATCC	1 cut(s)	4
BfaI	CTAG	4 cut(s)	69, 170, 384, 527
BfuI	GTATCC	1 cut(s)	4
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	5 cut(s)	60, 63, 66, 198, 346
BlsI	GCNGC	5 cut(s)	61, 64, 67, 199, 347
Bme18I	GGWCC	1 cut(s)	651
BmgT120I	GGNCC	1 cut(s)	651
BmiI	GGNNCC	2 cut(s)	6, 532
BpiI	GAAGAC	2 cut(s)	377, 654
BpmI	CTGGAG	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	7
BsaXI	ACNNNNNCTCC	4 cut(s)	364, 394, 530, 560
BseAI	TCCGGA	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	217, 411
BseXI	GCAGC	4 cut(s)	52, 74, 209, 332
Bsh1236I	CGCG	1 cut(s)	497
BshNI	GGYRCC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	8
BsmI	GAATGC	3 cut(s)	41, 230, 591
Bsp13I	TCCGGA	1 cut(s)	7
Bsp143I	GATC	5 cut(s)	4, 113, 139, 160, 523
Bsp68I	TCGCGA	1 cut(s)	497
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	216, 412
BspEI	TCCGGA	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	497
BspLI	GGNNCC	2 cut(s)	6, 532
BspPI	GGATC	3 cut(s)	12, 121, 155
BspT107I	GGYRCC	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	5 cut(s)	4, 113, 139, 160, 523
BssT1I	CCWWGG	1 cut(s)	534
Bst4CI	ACNGT	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	183, 450
BstDEI	CTNAG	3 cut(s)	203, 420, 590
BstF5I	GGATG	1 cut(s)	163
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	5 cut(s)	7, 116, 142, 163, 526
BstMBI	GATC	5 cut(s)	4, 113, 139, 160, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 425
BstNSI	RCATGY	1 cut(s)	392
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	4 cut(s)	52, 74, 209, 332
BstV2I	GAAGAC	2 cut(s)	377, 654
BstX2I	RGATCY	2 cut(s)	4, 523
BstYI	RGATCY	2 cut(s)	4, 523
BsuI	GTATCC	1 cut(s)	4
BtgZI	GCGATG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	163
BtuMI	TCGCGA	1 cut(s)	497
Cac8I	GCNNGC	2 cut(s)	183, 450
Cfr13I	GGNCC	1 cut(s)	651
CpoI	CGGWCCG	1 cut(s)	651
CseI	GACGC	1 cut(s)	425
CspI	CGGWCCG	1 cut(s)	651
CviAII	CATG	2 cut(s)	248, 389
CviJI	RGCY	5 cut(s)	65, 169, 448, 508, 559
CviKI_1	RGCY	5 cut(s)	65, 169, 448, 508, 559
DdeI	CTNAG	3 cut(s)	203, 420, 590
DpnI	GATC	5 cut(s)	6, 115, 141, 162, 525
DpnII	GATC	5 cut(s)	4, 113, 139, 160, 523
Eco130I	CCWWGG	1 cut(s)	534
Eco47I	GGWCC	1 cut(s)	651
Eco57I	CTGAAG	1 cut(s)	648
EcoT14I	CCWWGG	1 cut(s)	534
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	2 cut(s)	251, 392
FaiI	YATR	6 cut(s)	78, 249, 314, 316, 390, 644
FalI	AAGNNNNNCTT	4 cut(s)	126, 158, 573, 605
FatI	CATG	2 cut(s)	247, 388
FblI	GTMKAC	2 cut(s)	23, 675
Fnu4HI	GCNGC	5 cut(s)	60, 63, 66, 198, 346
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	5 cut(s)	60, 63, 66, 198, 346
FspBI	CTAG	4 cut(s)	69, 170, 384, 527
GluI	GCNGC	5 cut(s)	60, 63, 66, 198, 346
GsuI	CTGGAG	1 cut(s)	581
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	251, 392
HincII	GTYRAC	3 cut(s)	24, 127, 676
HindII	GTYRAC	3 cut(s)	24, 127, 676
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	5 cut(s)	34, 492, 565, 677, 683
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	28, 263, 433
Hpy166II	GTNNAC	4 cut(s)	24, 127, 394, 676
Hpy188I	TCNGA	2 cut(s)	682, 688
Hpy8I	GTNNAC	4 cut(s)	24, 127, 394, 676
Hpy99I	CGWCG	2 cut(s)	556, 651
HpyAV	CCTTC	2 cut(s)	266, 442
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	5 cut(s)	95, 181, 197, 348, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 425
HpyF3I	CTNAG	3 cut(s)	203, 420, 590
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	2 cut(s)	251, 392
Kpn2I	TCCGGA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	4, 113, 139, 160, 523
LmnI	GCTCC	2 cut(s)	385, 433
LpnPI	CCDG	7 cut(s)	21, 23, 135, 177, 190, 545, 557
Lsp1109I	GCAGC	4 cut(s)	52, 74, 209, 332
MaeI	CTAG	4 cut(s)	69, 170, 384, 527
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	3 cut(s)	292, 317, 439
MalI	GATC	5 cut(s)	6, 115, 141, 162, 525
MboI	GATC	5 cut(s)	4, 113, 139, 160, 523
MboII	GAAGA	6 cut(s)	382, 427, 560, 623, 632, 654
MflI	RGATCY	2 cut(s)	4, 523
MluCI	AATT	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	671
MnlI	CCTC	4 cut(s)	38, 124, 601, 610
MroI	TCCGGA	1 cut(s)	7
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	8
Mva1269I	GAATGC	3 cut(s)	41, 230, 591
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	65, 425
NdeII	GATC	5 cut(s)	4, 113, 139, 160, 523
NlaIII	CATG	2 cut(s)	251, 392
NlaIV	GGNNCC	2 cut(s)	6, 532
NmuCI	GTSAC	3 cut(s)	292, 317, 439
NruI	TCGCGA	1 cut(s)	497
NspI	RCATGY	1 cut(s)	392
PciI	ACATGT	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 29
PctI	GAATGC	3 cut(s)	41, 230, 591
PfeI	GAWTC	4 cut(s)	34, 492, 565, 683
PkrI	GCNGC	5 cut(s)	61, 64, 67, 199, 347
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
PscI	ACATGT	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	6, 532
PspPI	GGNCC	1 cut(s)	651
PsuI	RGATCY	2 cut(s)	4, 523
PvuII	CAGCTG	1 cut(s)	65
RruI	TCGCGA	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	410
Rsr2I	CGGWCCG	1 cut(s)	651
RsrII	CGGWCCG	1 cut(s)	651
SalI	GTCGAC	2 cut(s)	22, 674
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	5 cut(s)	60, 63, 66, 198, 346
Sau3AI	GATC	5 cut(s)	4, 113, 139, 160, 523
Sau96I	GGNCC	1 cut(s)	651
SchI	GAGTC	1 cut(s)	671
SetI	ASST	8 cut(s)	67, 124, 171, 450, 532, 561, 649, 662
SinI	GGWCC	1 cut(s)	651
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	149
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	4 cut(s)	69, 170, 384, 527
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	3 cut(s)	23, 32, 675
TaqII	GACCGA	1 cut(s)	639
TasI	AATT	1 cut(s)	149
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	4 cut(s)	34, 492, 565, 683
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TseFI	GTSAC	3 cut(s)	292, 317, 439
TseI	GCWGC	4 cut(s)	62, 65, 197, 345
Tsp45I	GTSAC	3 cut(s)	292, 317, 439
TspDTI	ATGAA	2 cut(s)	114, 394
TspGWI	ACGGA	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	651
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XmiI	GTMKAC	2 cut(s)	23, 675
XspI	CTAG	4 cut(s)	69, 170, 384, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.