Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005298

Physical Location & Seq

Genomic Coordinates Reverse (-)

7846167 .. 7850509

Gene Structure 4343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g11100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGATCCCGATTCAGTGAAATCCACTCTCCAAAATCTAGCCTTCGGAAATGTAATGGCCGCAGCGGCCCGCAATTACCAAAAGGAATTGCTCTCCAACGAGAAGGCGGCCGCCACAAGCTCCGCCAACCAGGAGGTCGACCTTGACGAGTTGATGGATGATCCGGAGCTTGAAAAACTGCACGCGGATCGGATTAATGCTCTAAAGAAAGAAGCTGAGAAGCGAGATGCTTTGAAGAGAAAAGGGCATGGAGAGTACAGGGATATAACTGAGGGGGATTTTTTGGGTGAAGTTACCGGAACGGAAAAGGTCATCTGCCATTTTTATCACCGGGAGTTCTACAGATGCAAGATAATGGATAAGCATTTGAAGACGCTTGCCTTGAAGCATGTGGATTCTAAGTTCATCAAGCTGGATGCTGAGAATGCGCCGTTCTTCGTCACCAAGCTGGGAATCAAAACTTTACCTTGTGTCATACTCTTCAGAAAAGGAGTTGCTGTGGATAGGTTGGTTGGATTTCAAGAAGTGGGAACGAGAGATGATTTCAGCACAAGGGCGCTCGAGGTTGCATTAATCAAGAAAGGTATAATTAGTGAGAAGAAAGAAGACGGTGATGAAGATGATGGATATCTTGAAGGCGGTCGTAGGACAGTGAGATCGTCTGTGAATCTGGATTCGGATTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007010 GO:0007017 GO:0007049 GO:0008092 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0015631 GO:0016043 GO:0016049 GO:0018130 GO:0019438 GO:0022402 GO:0030865 GO:0031122 GO:0032506 GO:0034404 GO:0034641 GO:0034654 GO:0040007 GO:0042455 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0048285 GO:0048487 GO:0051211 GO:0051301 GO:0055086 GO:0061640 GO:0071704 GO:0071840 GO:0097435 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

230

Amino Acids

25.72

Weight (kDa)

5.63

Isoelectric Point (pI)

21.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin	PF00085	90 - 175	4.2e-06	Thioredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50960 AT3G50960 AT5G66410
fragaria_vesca	FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_5g33310
malus_domestica	MD02G1141000.v1.1 MD15G1253500.v1.1
prunus_persica	Prupe.5G010500_v2.0.a1 Prupe.5G010500_v2.0.a1 Prupe.6G150600_v2.0.a1 Prupe.6G150600_v2.0.a1
pyrus_communis	pycom02g11100 pycom15g22330
rosa_chinensis	RchiOBHm_Chr2g0100611
rosa_laevigata	RLG00000016988
rosa_multiflora	Rmu_sc0000528.1_g000004 Rmu_sc0001497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142090
rosa_rugosa	Rorug02G0090200 Rorug02G0090300 Rorug02G0090400
rosa_samantha	Rh2AG139100 Rh2BG142400 Rh2CG144700 Rh2DG144100
rosa_wichuraiana	Rw2G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	8 cut(s)	60, 65, 70, 107, 111, 123, 185, 639
AclWI	GGATC	3 cut(s)	12, 155, 195
AcoI	YGGCCR	2 cut(s)	57, 108
AcuI	CTGAAG	1 cut(s)	466
AfaI	GTAC	1 cut(s)	257
AgsI	TTSAA	6 cut(s)	173, 235, 370, 385, 521, 635
AjnI	CCWGG	1 cut(s)	129
AloI	GAACNNNNNNTCC	2 cut(s)	386, 418
AluBI	AGCT	5 cut(s)	120, 169, 215, 412, 448
AluI	AGCT	5 cut(s)	120, 169, 215, 412, 448
AlwI	GGATC	3 cut(s)	12, 155, 195
Ama87I	CYCGRG	1 cut(s)	560
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	3 cut(s)	57, 66, 108
ApeKI	GCWGC	1 cut(s)	62
AseI	ATTAAT	2 cut(s)	195, 572
AspLEI	GCGC	2 cut(s)	430, 559
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	4 cut(s)	299, 320, 433, 623
AvaI	CYCGRG	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	377, 612
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	148, 617
BceAI	ACGGC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	332
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	560
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
BlsI	GCNGC	5 cut(s)	61, 64, 67, 109, 112
Bme1390I	CCNGG	2 cut(s)	131, 332
BmeT110I	CYCGRG	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	131, 332
BmsI	GCATC	3 cut(s)	217, 335, 406
BpiI	GAAGAC	2 cut(s)	377, 612
BpuMI	CCSGG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	627
BsaWI	WCCGGW	2 cut(s)	163, 296
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bse8I	GATNNNNATC	1 cut(s)	627
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	163, 421
BseJI	GATNNNNATC	1 cut(s)	627
BseMII	CTCAG	3 cut(s)	207, 261, 411
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	448
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	2 cut(s)	111, 643
BshFI	GGCC	3 cut(s)	59, 68, 110
BsiEI	CGRYCG	2 cut(s)	111, 643
BsiHKCI	CYCGRG	1 cut(s)	560
BsiSI	CCGG	3 cut(s)	164, 297, 331
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	3 cut(s)	59, 68, 110
BsoBI	CYCGRG	1 cut(s)	560
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	4, 160, 187, 656
BspACI	CCGC	8 cut(s)	60, 65, 70, 107, 111, 123, 185, 639
BspANI	GGCC	3 cut(s)	59, 68, 110
BspCNI	CTCAG	3 cut(s)	208, 262, 412
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	12, 155, 195
BssMI	GATC	4 cut(s)	4, 160, 187, 656
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	2 cut(s)	611, 652
Bst6I	CTCTTC	2 cut(s)	230, 485
BstC8I	GCNNGC	3 cut(s)	70, 183, 378
BstDEI	CTNAG	4 cut(s)	216, 270, 399, 420
BstF5I	GGATG	2 cut(s)	163, 421
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	2 cut(s)	430, 559
BstKTI	GATC	4 cut(s)	7, 163, 190, 659
BstMBI	GATC	4 cut(s)	4, 160, 187, 656
BstMCI	CGRYCG	2 cut(s)	111, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 425
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	2 cut(s)	129, 330
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	74
BstV2I	GAAGAC	2 cut(s)	377, 612
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BstZI	CGGCCG	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	59, 68, 110
BtsCI	GGATG	2 cut(s)	163, 421
BtsIMutI	CAGTG	2 cut(s)	21, 657
Cac8I	GCNNGC	3 cut(s)	70, 183, 378
CciNI	GCGGCCGC	1 cut(s)	108
CfoI	GCGC	2 cut(s)	430, 559
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	2 cut(s)	248, 389
CviJI	RGCY	9 cut(s)	41, 59, 68, 110, 120, 169, 215, 412, 448
CviKI_1	RGCY	9 cut(s)	41, 59, 68, 110, 120, 169, 215, 412, 448
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	4 cut(s)	216, 270, 399, 420
DpnI	GATC	4 cut(s)	6, 162, 189, 658
DpnII	GATC	4 cut(s)	4, 160, 187, 656
EaeI	YGGCCR	2 cut(s)	57, 108
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	2 cut(s)	230, 485
EarI	CTCTTC	2 cut(s)	230, 485
EciI	GGCGGA	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	108
Eco32I	GATATC	1 cut(s)	629
Eco52I	CGGCCG	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	466
Eco88I	CYCGRG	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	129
EcoRV	GATATC	1 cut(s)	629
FaeI	CATG	2 cut(s)	251, 392
FaiI	YATR	5 cut(s)	249, 266, 390, 476, 587
FatI	CATG	2 cut(s)	247, 388
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
FokI	GGATG	2 cut(s)	170, 428
Fsp4HI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	2 cut(s)	429, 558
GluI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
GsaI	CCCAGC	1 cut(s)	452
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	3 cut(s)	59, 68, 110
HapII	CCGG	3 cut(s)	164, 297, 331
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	2 cut(s)	430, 559
Hin1II	CATG	2 cut(s)	251, 392
Hin6I	GCGC	2 cut(s)	428, 557
HinP1I	GCGC	2 cut(s)	428, 557
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	6 cut(s)	11, 395, 453, 667, 674, 680
HpaII	CCGG	3 cut(s)	164, 297, 331
HphI	GGTGA	4 cut(s)	299, 320, 433, 623
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	5 cut(s)	47, 192, 485, 679, 685
Hpy188III	TCNNGA	6 cut(s)	8, 164, 521, 577, 632, 671
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	52, 97, 629
HpyCH4III	ACNGT	2 cut(s)	611, 652
HpyCH4V	TGCA	3 cut(s)	181, 348, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 425
HpyF3I	CTNAG	4 cut(s)	216, 270, 399, 420
Hsp92II	CATG	2 cut(s)	251, 392
HspAI	GCGC	2 cut(s)	428, 557
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	4, 160, 187, 656
LmnI	GCTCC	2 cut(s)	125, 166
LpnPI	CCDG	9 cut(s)	116, 143, 177, 244, 310, 344, 398, 434, 656
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	3 cut(s)	217, 335, 406
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	292, 439
MalI	GATC	4 cut(s)	6, 162, 189, 658
MboI	GATC	4 cut(s)	4, 160, 187, 656
MboII	GAAGA	7 cut(s)	247, 382, 427, 472, 610, 617, 629
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	3 cut(s)	73, 86, 588
MmeI	TCCRAC	2 cut(s)	120, 493
MnlI	CCTC	3 cut(s)	127, 265, 556
MroI	TCCGGA	1 cut(s)	163
MseI	TTAA	2 cut(s)	195, 572
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	3 cut(s)	164, 297, 331
MspR9I	CCNGG	2 cut(s)	131, 332
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	65, 425
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	4 cut(s)	4, 160, 187, 656
NlaIII	CATG	2 cut(s)	251, 392
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	439
NotI	GCGGCCGC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	6 cut(s)	11, 395, 453, 667, 674, 680
PkrI	GCNGC	5 cut(s)	61, 64, 67, 109, 112
PshBI	ATTAAT	2 cut(s)	195, 572
Psp6I	CCWGG	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	67
PspXI	VCTCGAGB	1 cut(s)	560
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	195, 572
SatI	GCNGC	5 cut(s)	60, 63, 66, 108, 111
Sau3AI	GATC	4 cut(s)	4, 160, 187, 656
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	131, 332
SfaNI	GCATC	3 cut(s)	217, 335, 406
SfcI	CTRYAG	1 cut(s)	340
SfiI	GGCCNNNNNGGCC	1 cut(s)	65
Sfr274I	CTCGAG	1 cut(s)	560
SlaI	CTCGAG	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	3 cut(s)	73, 86, 588
SsiI	CCGC	8 cut(s)	60, 65, 70, 107, 111, 123, 185, 639
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	129, 330
TaaI	ACNGT	2 cut(s)	611, 652
TaqI	TCGA	2 cut(s)	138, 561
TasI	AATT	3 cut(s)	73, 86, 588
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	4 cut(s)	62, 68, 110, 113
TfiI	GAWTC	6 cut(s)	11, 395, 453, 667, 674, 680
Tru1I	TTAA	2 cut(s)	195, 572
Tru9I	TTAA	2 cut(s)	195, 572
TscAI	CASTG	2 cut(s)	21, 657
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	394, 630
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	2 cut(s)	21, 657
VspI	ATTAAT	2 cut(s)	195, 572
XceI	RCATGY	1 cut(s)	392
XhoI	CTCGAG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.