Rmu_sc0001497.1_g000002

Thioredoxin domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001497.1
Physical Location & Seq
Reverse (-)
10667 .. 16104
5438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001497.1_g000002.1.cds

Sequence Viewer

Length: 1437 bp
atgagaagaagaagaagaagaaacagacacagcttttggcagagtgatcgatggaacgcctcgctccaccgtgactttctcggtgtcgggttttcgtatccgcttactacacatggcggaaggagccccactccggtcgataatgttaaagcttgtggcgacgatcgtggagcgacaagatgcggcggcgccgagcgaggtctctgcgttgatcgtgagtggcggcgcgtggcttctgggttggaggcctcgctaacggtgtttttagctgggttagattcggtctttgagcgccgtgcagcgtcgatggaggtggttgtcgactctgatcggggcaatagacgaggctggtggatgggatgtgtagattggtgctgcgatctgggcccggttgtgttcacccagatgtcagtggacggtttgatgatgtgggcaggaaggccgccgaaaatggcagtggtggaggcggagtggcagaagtggatggactggaatgtttctcccttgtgggcttgggtttgggtgtgggtctctggggctgagctcaacttcgggctgatggggcagaagaccttgttctacaggaaaaaagcctccaagaaggagaaagtgaagaggcaatccgagactggtgtgattcgaaagccccagaggtccagaccaagtgaccaaagtaaagcttctcttctgtatccagatctccacagaaaaacagtctcaaagttactcactttcgtttttcagggcaagatggatccagatgcggtcaaatccactctccaaaacctagcatttggaaatgtaatggccgccgctgcccgcaattaccagaaggaaattatcgccgaaggaaaagctccggccaccagctccgccgaccaggaggtcgaccttgacgacctcatggatgatcctgagctggaaaaattgcacgcggatcgaattgcagctctcaagagagaagctgagaagagggaggcgttgaagaggcaaggacatggagagtatagggaaattactgagggggatttcttaggtgaagttactgggagcgaaaaggccatctgccacttttatcatagagaattctatagatgcaagataatggataagcatttgaagacccttgctttaaagcatgttgataccaagttcataaagctggatgccgagaatgcccccttcttcgtcaccaagctaggagtcaaaactctgccttgtgtcataatattcagaaaaggagttgctgtggataggctgattggatttattgatatgggtggaaaagatgatttcagcacaagggcacttgaggctgtcctaatcaagaaaggtataattagtgagaagaaagaagaagacgaagatgatgattatcttgaaggtggtcgcaggacagtgagatcctctgtgaatcatgattctgattcagactga

Protein Analysis

478

Amino Acids

54.3

Weight (kDa)

8.95

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
AccB1I GGYRCC 1 cut(s) 188
AccI GTMKAC 2 cut(s) 321, 888
AccII CGCG 2 cut(s) 228, 935
AclWI GGATC 5 cut(s) 749, 762, 905, 945, 1398
AcoI YGGCCR 2 cut(s) 807, 861
AcsI RAATTY 1 cut(s) 1085
AcyI GRCGYC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 3 cut(s) 985, 1120, 1382
AjnI CCWGG 1 cut(s) 879
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 4 cut(s) 206, 535, 620, 721
AlwI GGATC 5 cut(s) 749, 762, 905, 945, 1398
AoxI GGCC 6 cut(s) 246, 385, 440, 807, 861, 1059
ApaI GGGCCC 1 cut(s) 389
ApeKI GCWGC 4 cut(s) 299, 375, 815, 947
ApoI RAATTY 1 cut(s) 1085
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AspLEI GCGC 3 cut(s) 191, 228, 294
AspS9I GGNCC 3 cut(s) 385, 386, 654
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 3 cut(s) 391, 1049, 1183
AsuII TTCGAA 1 cut(s) 640
AvaII GGWCC 1 cut(s) 654
BaeGI GKGCMC 2 cut(s) 389, 1309
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 3 cut(s) 128, 389, 546
BbsI GAAGAC 3 cut(s) 575, 1127, 1365
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 4 cut(s) 311, 362, 802, 959
BccI CCATC 7 cut(s) 45, 301, 349, 478, 553, 745, 1070
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 6 cut(s) 29, 63, 186, 220, 920, 954
BciT130I CCWGG 1 cut(s) 881
BciVI GTATCC 2 cut(s) 108, 702
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 4 cut(s) 206, 535, 620, 721
BfaI CTAG 2 cut(s) 788, 1199
BfmI CTRYAG 2 cut(s) 580, 1090
BfoI RGCGCY 2 cut(s) 192, 295
BfuI GTATCC 2 cut(s) 108, 702
BglII AGATCT 1 cut(s) 697
BlpI GCTNAGC 1 cut(s) 540
Bme1390I CCNGG 2 cut(s) 389, 881
Bme18I GGWCC 1 cut(s) 654
BmgT120I GGNCC 3 cut(s) 385, 386, 654
BmiI GGNNCC 4 cut(s) 125, 190, 387, 756
BmrFI CCNGG 2 cut(s) 389, 881
BmrI ACTGGG 1 cut(s) 1056
BmsI GCATC 4 cut(s) 170, 751, 1085, 1156
BmuI ACTGGG 1 cut(s) 1056
BpiI GAAGAC 3 cut(s) 575, 1127, 1365
BplI GAGNNNNNCTC 2 cut(s) 115, 147
Bpu10I CCTNAGC 1 cut(s) 915
Bpu1102I GCTNAGC 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 640
BpuEI CTTGAG 2 cut(s) 938, 1331
BpuMI CCSGG 1 cut(s) 389
Bsa29I ATCGAT 1 cut(s) 49
BsaBI GATNNNNATC 1 cut(s) 1374
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 2 cut(s) 206, 535
BsaWI WCCGGW 1 cut(s) 133
BsaXI ACNNNNNCTCC 4 cut(s) 455, 485, 1233, 1263
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 3 cut(s) 494, 634, 1051
Bse8I GATNNNNATC 1 cut(s) 1374
BseBI CCWGG 1 cut(s) 881
BseCI ATCGAT 1 cut(s) 49
BseGI GGATG 5 cut(s) 360, 365, 489, 913, 1171
BseJI GATNNNNATC 1 cut(s) 1374
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 4 cut(s) 531, 906, 957, 1011
BseNI ACTGG 3 cut(s) 494, 634, 1051
BseSI GKGCMC 2 cut(s) 389, 1309
BseXI GCAGC 4 cut(s) 311, 362, 802, 959
BseYI CCCAGC 1 cut(s) 269
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 2 cut(s) 228, 935
Bsh1285I CGRYCG 2 cut(s) 138, 166
BshFI GGCC 6 cut(s) 248, 387, 442, 809, 863, 1061
BshNI GGYRCC 1 cut(s) 188
BshVI ATCGAT 1 cut(s) 49
BsiEI CGRYCG 2 cut(s) 138, 166
BsiHKAI GWGCWC 1 cut(s) 546
BsiSI CCGG 3 cut(s) 134, 389, 860
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 4 cut(s) 206, 535, 620, 721
BsmI GAATGC 1 cut(s) 1180
BsnI GGCC 6 cut(s) 248, 387, 442, 809, 863, 1061
Bso31I GGTCTC 2 cut(s) 206, 535
Bsp119I TTCGAA 1 cut(s) 640
Bsp120I GGGCCC 1 cut(s) 385
Bsp1286I GDGCHC 4 cut(s) 128, 389, 546, 1309
Bsp1720I GCTNAGC 1 cut(s) 540
BspANI GGCC 6 cut(s) 248, 387, 442, 809, 863, 1061
BspCNI CTCAG 4 cut(s) 532, 907, 958, 1012
BspDI ATCGAT 1 cut(s) 49
BspFNI CGCG 2 cut(s) 228, 935
BspHI TCATGA 1 cut(s) 1417
BspLI GGNNCC 4 cut(s) 125, 190, 387, 756
BspPI GGATC 5 cut(s) 749, 762, 905, 945, 1398
BspT104I TTCGAA 1 cut(s) 640
BspT107I GGYRCC 1 cut(s) 188
BspTNI GGTCTC 2 cut(s) 206, 535
BsrI ACTGG 3 cut(s) 494, 634, 1051
BssNI GRCGYC 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 881
Bst4CI ACNGT 5 cut(s) 71, 259, 419, 715, 1399
Bst6I CTCTTC 4 cut(s) 608, 690, 965, 980
BstACI GRCGYC 1 cut(s) 189
BstBI TTCGAA 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 820, 933
BstDEI CTNAG 5 cut(s) 540, 915, 966, 1020, 1033
BstF5I GGATG 5 cut(s) 360, 365, 489, 913, 1171
BstFNI CGCG 2 cut(s) 228, 935
BstH2I RGCGCY 2 cut(s) 192, 295
BstHHI GCGC 3 cut(s) 191, 228, 294
BstMAI GTCTC 4 cut(s) 206, 535, 620, 721
BstMCI CGRYCG 2 cut(s) 138, 166
BstMWI GCNNNNNNNGC 6 cut(s) 123, 384, 562, 815, 1175, 1313
BstNI CCWGG 1 cut(s) 881
BstNSI RCATGY 1 cut(s) 1142
BstSCI CCNGG 2 cut(s) 387, 879
BstSFI CTRYAG 2 cut(s) 580, 1090
BstSLI GKGCMC 2 cut(s) 389, 1309
BstUI CGCG 2 cut(s) 228, 935
BstV1I GCAGC 4 cut(s) 311, 362, 802, 959
BstV2I GAAGAC 3 cut(s) 575, 1127, 1365
BstX2I RGATCY 3 cut(s) 697, 754, 1403
BstYI RGATCY 3 cut(s) 697, 754, 1403
Bsu15I ATCGAT 1 cut(s) 49
BsuI GTATCC 2 cut(s) 108, 702
BsuRI GGCC 6 cut(s) 248, 387, 442, 809, 863, 1061
BsuTUI ATCGAT 1 cut(s) 49
BtsCI GGATG 5 cut(s) 360, 365, 489, 913, 1171
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 417, 462, 1404
Cac8I GCNNGC 2 cut(s) 820, 933
CciI TCATGA 1 cut(s) 1417
CfoI GCGC 3 cut(s) 191, 228, 294
Cfr13I GGNCC 3 cut(s) 385, 386, 654
ClaI ATCGAT 1 cut(s) 49
CseI GACGC 1 cut(s) 291
CviAII CATG 5 cut(s) 113, 904, 998, 1139, 1418
DdeI CTNAG 5 cut(s) 540, 915, 966, 1020, 1033
DinI GGCGCC 1 cut(s) 190
DraI TTTAAA 1 cut(s) 1134
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 2 cut(s) 807, 861
Eam1104I CTCTTC 4 cut(s) 608, 690, 965, 980
EarI CTCTTC 4 cut(s) 608, 690, 965, 980
EciI GGCGGA 3 cut(s) 132, 482, 862
Ecl136II GAGCTC 1 cut(s) 544
Eco147I AGGCCT 1 cut(s) 248
Eco24I GRGCYC 3 cut(s) 128, 389, 546
Eco31I GGTCTC 2 cut(s) 206, 535
Eco47I GGWCC 1 cut(s) 654
Eco53kI GAGCTC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 544
EcoRI GAATTC 1 cut(s) 1085
EcoRII CCWGG 1 cut(s) 879
EcoT38I GRGCYC 3 cut(s) 128, 389, 546
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
FaeI CATG 5 cut(s) 116, 907, 1001, 1142, 1421
FalI AAGNNNNNCTT 4 cut(s) 664, 696, 669, 701
FatI CATG 5 cut(s) 112, 903, 997, 1138, 1417
FauI CCCGC 1 cut(s) 827
FblI GTMKAC 2 cut(s) 321, 888
FokI GGATG 5 cut(s) 367, 372, 496, 920, 1178
FriOI GRGCYC 3 cut(s) 128, 389, 546
FspBI CTAG 2 cut(s) 788, 1199
GlaI GCGC 3 cut(s) 190, 227, 293
GsaI CCCAGC 1 cut(s) 273
HaeII RGCGCY 2 cut(s) 192, 295
HaeIII GGCC 6 cut(s) 248, 387, 442, 809, 863, 1061
HapII CCGG 3 cut(s) 134, 389, 860
HgaI GACGC 1 cut(s) 291
HhaI GCGC 3 cut(s) 191, 228, 294
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 5 cut(s) 116, 907, 1001, 1142, 1421
Hin6I GCGC 3 cut(s) 189, 226, 292
HinP1I GCGC 3 cut(s) 189, 226, 292
HincII GTYRAC 2 cut(s) 322, 889
HindII GTYRAC 2 cut(s) 322, 889
HindIII AAGCTT 2 cut(s) 150, 678
HinfI GANTC 7 cut(s) 278, 323, 637, 1203, 1414, 1421, 1427
HpaII CCGG 3 cut(s) 134, 389, 860
HphI GGTGA 3 cut(s) 391, 1049, 1183
Hpy166II GTNNAC 4 cut(s) 322, 399, 415, 889
Hpy188I TCNGA 5 cut(s) 328, 625, 1235, 1426, 1432
Hpy188III TCNNGA 9 cut(s) 215, 657, 695, 758, 914, 955, 1327, 1379, 1418
Hpy8I GTNNAC 4 cut(s) 322, 399, 415, 889
Hpy99I CGWCG 2 cut(s) 164, 307
HpyAV CCTTC 7 cut(s) 114, 432, 595, 826, 842, 1192, 1376
HpyCH4III ACNGT 5 cut(s) 71, 259, 419, 715, 1399
HpyCH4V TGCA 4 cut(s) 299, 931, 947, 1098
HpyF10VI GCNNNNNNNGC 6 cut(s) 123, 384, 562, 815, 1175, 1313
HpyF3I CTNAG 5 cut(s) 540, 915, 966, 1020, 1033
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 5 cut(s) 116, 907, 1001, 1142, 1421
HspAI GCGC 3 cut(s) 189, 226, 292
KasI GGCGCC 1 cut(s) 188
LmnI GCTCC 6 cut(s) 69, 123, 170, 862, 875, 1050
Lsp1109I GCAGC 4 cut(s) 311, 362, 802, 959
LweI GCATC 4 cut(s) 170, 751, 1085, 1156
MaeI CTAG 2 cut(s) 788, 1199
MaeIII GTNAC 5 cut(s) 71, 665, 723, 1042, 1189
MflI RGATCY 3 cut(s) 697, 754, 1403
MhlI GDGCHC 4 cut(s) 128, 389, 546, 1309
MluCI AATT 7 cut(s) 823, 837, 926, 942, 1014, 1085, 1338
Mly113I GGCGCC 1 cut(s) 189
MlyI GAGTC 2 cut(s) 317, 1212
MmeI TCCRAC 1 cut(s) 222
MseI TTAA 2 cut(s) 147, 1133
MslI CAYNNNNRTG 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 815
MspI CCGG 3 cut(s) 134, 389, 860
MspR9I CCNGG 2 cut(s) 389, 881
Mva1269I GAATGC 1 cut(s) 1180
MvaI CCWGG 1 cut(s) 881
MvnI CGCG 2 cut(s) 228, 935
MwoI GCNNNNNNNGC 6 cut(s) 123, 384, 562, 815, 1175, 1313
NarI GGCGCC 1 cut(s) 189
NciI CCSGG 1 cut(s) 389
NlaIII CATG 5 cut(s) 116, 907, 1001, 1142, 1421
NlaIV GGNNCC 4 cut(s) 125, 190, 387, 756
NmeAIII GCCGAG 2 cut(s) 217, 1195
NmuCI GTSAC 3 cut(s) 71, 665, 1189
NspI RCATGY 1 cut(s) 1142
NspV TTCGAA 1 cut(s) 640
PagI TCATGA 1 cut(s) 1417
PceI AGGCCT 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 894
PctI GAATGC 1 cut(s) 1180
PfeI GAWTC 5 cut(s) 278, 637, 1414, 1421, 1427
Ple19I CGATCG 1 cut(s) 166
PleI GAGTC 2 cut(s) 317, 1211
PluTI GGCGCC 1 cut(s) 192
PpsI GAGTC 2 cut(s) 317, 1211
Psp124BI GAGCTC 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 879
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 879
PspN4I GGNNCC 4 cut(s) 125, 190, 387, 756
PspOMI GGGCCC 1 cut(s) 385
PspPI GGNCC 3 cut(s) 385, 386, 654
PsuI RGATCY 3 cut(s) 697, 754, 1403
PvuI CGATCG 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 546
SalI GTCGAC 2 cut(s) 320, 887
SaqAI TTAA 2 cut(s) 147, 1133
Sau96I GGNCC 3 cut(s) 385, 386, 654
SchI GAGTC 2 cut(s) 317, 1212
ScrFI CCNGG 2 cut(s) 389, 881
SduI GDGCHC 4 cut(s) 128, 389, 546, 1309
SfaNI GCATC 4 cut(s) 170, 751, 1085, 1156
SfcI CTRYAG 2 cut(s) 580, 1090
SfoI GGCGCC 1 cut(s) 190
SfuI TTCGAA 1 cut(s) 640
SinI GGWCC 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 953, 1310
SmoI CTYRAG 2 cut(s) 953, 1310
Sse9I AATT 7 cut(s) 823, 837, 926, 942, 1014, 1085, 1338
SseBI AGGCCT 1 cut(s) 248
SspDI GGCGCC 1 cut(s) 188
SspI AATATT 1 cut(s) 1230
SspMI CTAG 2 cut(s) 788, 1199
SstI GAGCTC 1 cut(s) 546
StuI AGGCCT 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 387, 879
TaaI ACNGT 5 cut(s) 71, 259, 419, 715, 1399
TaqI TCGA 7 cut(s) 49, 138, 305, 321, 640, 888, 940
TaqII GACCGA 1 cut(s) 271
TasI AATT 7 cut(s) 823, 837, 926, 942, 1014, 1085, 1338
TauI GCSGC 6 cut(s) 186, 189, 226, 445, 812, 815
TfiI GAWTC 5 cut(s) 278, 637, 1414, 1421, 1427
Tru1I TTAA 2 cut(s) 147, 1133
Tru9I TTAA 2 cut(s) 147, 1133
TscAI CASTG 3 cut(s) 417, 462, 1404
TseFI GTSAC 3 cut(s) 71, 665, 1189
TseI GCWGC 4 cut(s) 299, 375, 815, 947
Tsp45I GTSAC 3 cut(s) 71, 665, 1189
TspDTI ATGAA 1 cut(s) 1144
TspRI CASTG 3 cut(s) 417, 462, 1404
VpaK11BI GGWCC 1 cut(s) 654
XapI RAATTY 1 cut(s) 1085
XceI RCATGY 1 cut(s) 1142
XmiI GTMKAC 2 cut(s) 321, 888
XspI CTAG 2 cut(s) 788, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.