Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005298

Physical Location & Seq

Genomic Coordinates Reverse (-)

13025517 .. 13027639

Gene Structure 2123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G150600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATCCAGATTCAGTGAAATCCACTCTCCAAAATCTAGCTTTTGGAAATGTAATGGCCGCCGCGGCTCGCAATTACCAGAAGGAATTGCTTGCCAATGAAAAGGCACCGGCCACGAGCTCTGTCAACCAGGAAGTCGACCTTGACGAGTTGATGGATGATCCTGAGCTTGAAAAGTTGCATGCGGATCGGATTGCTGCTCTAAAGAAAGAAGCTGAGAAGAGAGAAGCTTTAAAGAGGAAAGGGCATGGAGAATATAGGGAGATAACTGAAGGGGATTTTTTAGGTGAAGTTACTGGGACTGAGAAAGCCATCTGCCACTTCTATCACCAGGAGTTCTATAGATGCAAGATAATGGATAAGCATTTGAAGACCCTTGCTTCAAAGCATGTTGATACCAAGTTCATCAAGCTGGATGCAGAGAATGCCCCCTTCTTCATCACCAAGTTAGGAGTCAAAACTTTGCCTTGCGTCATAATCTTCAGAAAAGGAGTTGCTGTGGATAGGTTGGTTGGATTTCAAGATATGGGAGGAAAAGATGATTTCAGCACAAGGGCACTTGAGGTTGTACTAATCAAGAAAGGTATAATTAGTGAGAAGAAAGATGAGGATGATGAAGATGATGGATATAATGACGGTAGTCGCAGGACAGTGAGGTCCTCTGTGAATCTTGATGATTCTGATTCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007010 GO:0007017 GO:0007049 GO:0008092 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0015631 GO:0016043 GO:0016049 GO:0018130 GO:0019438 GO:0022402 GO:0030865 GO:0031122 GO:0032506 GO:0034404 GO:0034641 GO:0034654 GO:0040007 GO:0042455 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0048285 GO:0048487 GO:0051211 GO:0051301 GO:0055086 GO:0061640 GO:0071704 GO:0071840 GO:0097435 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

231

Amino Acids

25.84

Weight (kDa)

5.29

Isoelectric Point (pI)

25.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50960 AT3G50960 AT5G66410
fragaria_vesca	FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_5g33310
malus_domestica	MD02G1141000.v1.1 MD15G1253500.v1.1
prunus_persica	Prupe.5G010500_v2.0.a1 Prupe.5G010500_v2.0.a1 Prupe.6G150600_v2.0.a1 Prupe.6G150600_v2.0.a1
pyrus_communis	pycom02g11100 pycom15g22330
rosa_chinensis	RchiOBHm_Chr2g0100611
rosa_laevigata	RLG00000016988
rosa_multiflora	Rmu_sc0000528.1_g000004 Rmu_sc0001497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142090
rosa_rugosa	Rorug02G0090200 Rorug02G0090300 Rorug02G0090400
rosa_samantha	Rh2AG139100 Rh2BG142400 Rh2CG144700 Rh2DG144100
rosa_wichuraiana	Rw2G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	106
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	65
AciI	CCGC	4 cut(s)	60, 63, 65, 185
AclWI	GGATC	3 cut(s)	12, 155, 195
AcoI	YGGCCR	2 cut(s)	57, 111
AcuI	CTGAAG	2 cut(s)	291, 466
AfaI	GTAC	1 cut(s)	570
AgsI	TTSAA	4 cut(s)	173, 370, 384, 521
AjnI	CCWGG	2 cut(s)	129, 330
AluBI	AGCT	6 cut(s)	41, 120, 169, 215, 230, 412
AluI	AGCT	6 cut(s)	41, 120, 169, 215, 230, 412
Alw21I	GWGCWC	1 cut(s)	122
AlwI	GGATC	3 cut(s)	12, 155, 195
AoxI	GGCC	2 cut(s)	57, 111
ApeKI	GCWGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	657
AsuHPI	GGTGA	3 cut(s)	299, 320, 433
AvaII	GGWCC	1 cut(s)	657
BaeGI	GKGCMC	1 cut(s)	559
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	184
BccI	CCATC	3 cut(s)	148, 320, 617
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	2 cut(s)	131, 332
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	4 cut(s)	60, 63, 66, 198
BlsI	GCNGC	4 cut(s)	61, 64, 67, 199
Bme1390I	CCNGG	2 cut(s)	131, 332
Bme18I	GGWCC	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	2 cut(s)	6, 108
BmrFI	CCNGG	2 cut(s)	131, 332
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	335, 406
BmuI	ACTGGG	1 cut(s)	306
BoxI	GACNNNNGTC	1 cut(s)	639
BpiI	GAAGAC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	581
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	131, 332
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	3 cut(s)	163, 421, 616
BseMII	CTCAG	3 cut(s)	156, 207, 294
BseNI	ACTGG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	559
BseXI	GCAGC	1 cut(s)	184
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	59, 113
BshNI	GGYRCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	110
BslFI	GGGAC	1 cut(s)	313
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	59, 113
Bsp1286I	GDGCHC	2 cut(s)	122, 559
Bsp143I	GATC	3 cut(s)	4, 160, 187
BspACI	CCGC	4 cut(s)	60, 63, 65, 185
BspANI	GGCC	2 cut(s)	59, 113
BspCNI	CTCAG	3 cut(s)	157, 208, 295
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	6, 108
BspPI	GGATC	3 cut(s)	12, 155, 195
BspT107I	GGYRCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	3 cut(s)	4, 160, 187
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	2 cut(s)	131, 332
Bst4CI	ACNGT	2 cut(s)	638, 652
Bst6I	CTCTTC	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	70, 93, 183
BstDEI	CTNAG	3 cut(s)	165, 216, 303
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	3 cut(s)	163, 421, 616
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	3 cut(s)	7, 163, 190
BstMBI	GATC	3 cut(s)	4, 160, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 425
BstNI	CCWGG	2 cut(s)	131, 332
BstNSI	RCATGY	2 cut(s)	185, 392
BstPAI	GACNNNNGTC	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	129, 330
BstSFI	CTRYAG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	559
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	59, 113
BtgI	CCRYGG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	163, 421, 616
BtsIMutI	CAGTG	2 cut(s)	21, 657
Cac8I	GCNNGC	3 cut(s)	70, 93, 183
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	657
Cfr42I	CCGCGG	1 cut(s)	66
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	3 cut(s)	182, 248, 389
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	3 cut(s)	165, 216, 303
DpnI	GATC	3 cut(s)	6, 162, 189
DpnII	GATC	3 cut(s)	4, 160, 187
DraI	TTTAAA	1 cut(s)	234
DrdI	GACNNNNNNGTC	1 cut(s)	655
DseDI	GACNNNNNNGTC	1 cut(s)	655
EaeI	YGGCCR	2 cut(s)	57, 111
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	657
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	2 cut(s)	291, 466
EcoICRI	GAGCTC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	657
EcoRII	CCWGG	2 cut(s)	129, 330
EcoT38I	GRGCYC	1 cut(s)	122
FaeI	CATG	3 cut(s)	185, 251, 392
FaiI	YATR	9 cut(s)	183, 249, 258, 342, 390, 476, 527, 587, 630
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	181, 247, 388
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	4 cut(s)	60, 63, 66, 198
FokI	GGATG	3 cut(s)	170, 428, 623
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	60, 63, 66, 198
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	4 cut(s)	60, 63, 66, 198
HaeIII	GGCC	2 cut(s)	59, 113
HapII	CCGG	1 cut(s)	110
HgaI	GACGC	1 cut(s)	460
Hin1II	CATG	3 cut(s)	185, 251, 392
HincII	GTYRAC	2 cut(s)	127, 139
HindII	GTYRAC	2 cut(s)	127, 139
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	5 cut(s)	11, 453, 667, 677, 683
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	3 cut(s)	299, 320, 433
Hpy166II	GTNNAC	2 cut(s)	127, 139
Hpy188I	TCNGA	4 cut(s)	192, 485, 682, 688
Hpy188III	TCNNGA	5 cut(s)	8, 164, 521, 577, 671
Hpy8I	GTNNAC	2 cut(s)	127, 139
HpyAV	CCTTC	3 cut(s)	76, 266, 442
HpyCH4III	ACNGT	2 cut(s)	638, 652
HpyCH4V	TGCA	3 cut(s)	181, 348, 419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 425
HpyF3I	CTNAG	3 cut(s)	165, 216, 303
Hsp92II	CATG	3 cut(s)	185, 251, 392
KspI	CCGCGG	1 cut(s)	66
Kzo9I	GATC	3 cut(s)	4, 160, 187
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	335, 406
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	3 cut(s)	6, 162, 189
MboI	GATC	3 cut(s)	4, 160, 187
MboII	GAAGA	6 cut(s)	232, 382, 427, 472, 610, 629
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	2 cut(s)	122, 559
MluCI	AATT	3 cut(s)	73, 86, 588
MlyI	GAGTC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	6 cut(s)	231, 524, 556, 601, 648, 670
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	2 cut(s)	131, 332
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	131, 332
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	65, 425
NdeII	GATC	3 cut(s)	4, 160, 187
NlaIII	CATG	3 cut(s)	185, 251, 392
NlaIV	GGNNCC	2 cut(s)	6, 108
NspI	RCATGY	2 cut(s)	185, 392
PaeI	GCATGC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	430
PfeI	GAWTC	4 cut(s)	11, 667, 677, 683
PkrI	GCNGC	4 cut(s)	61, 64, 67, 199
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PpuMI	RGGWCCY	1 cut(s)	657
PshAI	GACNNNNGTC	1 cut(s)	639
Psp124BI	GAGCTC	1 cut(s)	122
Psp5II	RGGWCCY	1 cut(s)	657
Psp6I	CCWGG	2 cut(s)	129, 330
PspGI	CCWGG	2 cut(s)	129, 330
PspN4I	GGNNCC	2 cut(s)	6, 108
PspPI	GGNCC	1 cut(s)	657
PspPPI	RGGWCCY	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SacI	GAGCTC	1 cut(s)	122
SacII	CCGCGG	1 cut(s)	66
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	4 cut(s)	60, 63, 66, 198
Sau3AI	GATC	3 cut(s)	4, 160, 187
Sau96I	GGNCC	1 cut(s)	657
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	2 cut(s)	131, 332
SduI	GDGCHC	2 cut(s)	122, 559
SfaNI	GCATC	2 cut(s)	335, 406
SfcI	CTRYAG	1 cut(s)	340
Sfr303I	CCGCGG	1 cut(s)	66
SgrBI	CCGCGG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	3 cut(s)	73, 86, 588
SsiI	CCGC	4 cut(s)	60, 63, 65, 185
SspMI	CTAG	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	129, 330
TaaI	ACNGT	2 cut(s)	638, 652
TaqI	TCGA	1 cut(s)	138
TasI	AATT	3 cut(s)	73, 86, 588
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	3 cut(s)	62, 65, 68
TfiI	GAWTC	4 cut(s)	11, 667, 677, 683
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	2 cut(s)	21, 657
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	4 cut(s)	114, 394, 427, 630
TspRI	CASTG	2 cut(s)	21, 657
VpaK11BI	GGWCC	1 cut(s)	657
XceI	RCATGY	2 cut(s)	185, 392
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.