Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005298

Physical Location & Seq

Genomic Coordinates Reverse (-)

12122564 .. 12124587

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG144100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGATCCAGATGCGGTCAAATCCACTCTCCAAAACCTAGCATTTGGAAATGTAATGGCCGCCGCTGCCCGCAATTACCAGAAGGAAATTATCGCCGAAGGAAAAGCTCCTGCCACCAGCGCCGCAGACCAGGAGGTCGACCTTGACGACCTCATGGATGATCCTGAGCTGGAAAAATTGCACGCGGATCGAATTGCAGCTCTCAAGAGAGAAGCTGAGAAGAGGGAAGCTTTGAAGAGGCAAGGACATGGAGAATATAGGGAAATTACTGAGGGCGATTTCTTAGGTGAAGTCACTGGGAGCGAGAAGGCCATCTGCCACTTTTATCATAGAGAATTCTATAGATGCAAGATAATGGATAAGCATTTGAAGACCCTTGCTTTAAAGCATGTTGATACCAAGTTCATGAAGCTGGATGCCGAGAATGCCCCCTTCTTCGTCACCAAGCTAGGAGTCAAAACTCTGCCTTGTGTCATAATATTCAGGTCAGAACGTTCTCATCCTAAATATTATAAATCTATATGCATTTCAATTTCCAGTATTGATATGCATATCAGCACACGCACTATATGGTTGGAACTATACTGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007010 GO:0007017 GO:0007049 GO:0008092 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0015631 GO:0016043 GO:0016049 GO:0018130 GO:0019438 GO:0022402 GO:0030865 GO:0031122 GO:0032506 GO:0034404 GO:0034641 GO:0034654 GO:0040007 GO:0042455 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0048285 GO:0048487 GO:0051211 GO:0051301 GO:0055086 GO:0061640 GO:0071704 GO:0071840 GO:0097435 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

197

Amino Acids

22.47

Weight (kDa)

6.45

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50960 AT3G50960 AT5G66410
fragaria_vesca	FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_5g33310
malus_domestica	MD02G1141000.v1.1 MD15G1253500.v1.1
prunus_persica	Prupe.5G010500_v2.0.a1 Prupe.5G010500_v2.0.a1 Prupe.6G150600_v2.0.a1 Prupe.6G150600_v2.0.a1
pyrus_communis	pycom02g11100 pycom15g22330
rosa_chinensis	RchiOBHm_Chr2g0100611
rosa_laevigata	RLG00000016988
rosa_multiflora	Rmu_sc0000528.1_g000004 Rmu_sc0001497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142090
rosa_rugosa	Rorug02G0090200 Rorug02G0090300 Rorug02G0090400
rosa_samantha	Rh2AG139100 Rh2BG142400 Rh2CG144700 Rh2DG144100
rosa_wichuraiana	Rw2G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AasI	GACNNNNNNGTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	185
AciI	CCGC	6 cut(s)	14, 60, 63, 70, 123, 185
AclI	AACGTT	1 cut(s)	493
AclWI	GGATC	3 cut(s)	12, 155, 195
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	235, 370, 531
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	7 cut(s)	107, 169, 200, 215, 230, 412, 448
AluI	AGCT	7 cut(s)	107, 169, 200, 215, 230, 412, 448
AlwI	GGATC	3 cut(s)	12, 155, 195
AoxI	GGCC	2 cut(s)	57, 309
ApeKI	GCWGC	2 cut(s)	65, 197
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	299, 433
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	52, 209
BccI	CCATC	1 cut(s)	320
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BciT130I	CCWGG	1 cut(s)	131
BfaI	CTAG	2 cut(s)	38, 449
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	5 cut(s)	60, 63, 66, 123, 198
BlsI	GCNGC	5 cut(s)	61, 64, 67, 124, 199
Bme1390I	CCNGG	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	335, 406
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	301, 537
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	3 cut(s)	163, 421, 499
BseMII	CTCAG	3 cut(s)	156, 207, 261
BseNI	ACTGG	2 cut(s)	301, 537
BseXI	GCAGC	2 cut(s)	52, 209
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	59, 311
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	59, 311
Bsp143I	GATC	3 cut(s)	4, 160, 187
BspACI	CCGC	6 cut(s)	14, 60, 63, 70, 123, 185
BspANI	GGCC	2 cut(s)	59, 311
BspCNI	CTCAG	3 cut(s)	157, 208, 262
BspFNI	CGCG	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	3 cut(s)	12, 155, 195
BsrI	ACTGG	2 cut(s)	301, 537
BssMI	GATC	3 cut(s)	4, 160, 187
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	2 cut(s)	215, 230
BstC8I	GCNNGC	2 cut(s)	70, 183
BstDEI	CTNAG	4 cut(s)	165, 216, 270, 283
BstF5I	GGATG	3 cut(s)	163, 421, 499
BstFNI	CGCG	1 cut(s)	185
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	7, 163, 190
BstMBI	GATC	3 cut(s)	4, 160, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 119, 425
BstNI	CCWGG	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	52, 209
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	59, 311
BtsCI	GGATG	3 cut(s)	163, 421, 499
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	2 cut(s)	70, 183
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	1 cut(s)	122
CviAII	CATG	4 cut(s)	154, 248, 389, 406
CviJI	RGCY	9 cut(s)	59, 107, 169, 200, 215, 230, 311, 412, 448
CviKI_1	RGCY	9 cut(s)	59, 107, 169, 200, 215, 230, 311, 412, 448
DdeI	CTNAG	4 cut(s)	165, 216, 270, 283
DpnI	GATC	3 cut(s)	6, 162, 189
DpnII	GATC	3 cut(s)	4, 160, 187
DraI	TTTAAA	1 cut(s)	384
DrdI	GACNNNNNNGTC	1 cut(s)	134
DseDI	GACNNNNNNGTC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	215, 230
EarI	CTCTTC	2 cut(s)	215, 230
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	129
EcoT22I	ATGCAT	2 cut(s)	527, 552
FaeI	CATG	4 cut(s)	157, 251, 392, 409
FatI	CATG	4 cut(s)	153, 247, 388, 405
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	60, 63, 66, 123, 198
FokI	GGATG	3 cut(s)	170, 428, 486
Fsp4HI	GCNGC	5 cut(s)	60, 63, 66, 123, 198
FspBI	CTAG	2 cut(s)	38, 449
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	5 cut(s)	60, 63, 66, 123, 198
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	59, 311
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	157, 251, 392, 409
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	1 cut(s)	453
HphI	GGTGA	2 cut(s)	299, 433
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	4 cut(s)	8, 164, 205, 406
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	4 cut(s)	76, 92, 301, 442
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	5 cut(s)	181, 197, 348, 525, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 119, 425
HpyF3I	CTNAG	4 cut(s)	165, 216, 270, 283
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	4 cut(s)	157, 251, 392, 409
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	4, 160, 187
LmnI	GCTCC	2 cut(s)	112, 300
Lsp1109I	GCAGC	2 cut(s)	52, 209
LweI	GCATC	2 cut(s)	335, 406
MaeI	CTAG	2 cut(s)	38, 449
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	292, 439
MalI	GATC	3 cut(s)	6, 162, 189
MboI	GATC	3 cut(s)	4, 160, 187
MboII	GAAGA	4 cut(s)	232, 247, 382, 427
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	7 cut(s)	73, 87, 176, 192, 264, 335, 531
MlyI	GAGTC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	5 cut(s)	127, 161, 216, 231, 265
Mph1103I	ATGCAT	2 cut(s)	527, 552
MseI	TTAA	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	65, 119, 425
NdeII	GATC	3 cut(s)	4, 160, 187
NlaIII	CATG	4 cut(s)	157, 251, 392, 409
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	2 cut(s)	292, 439
NsiI	ATGCAT	2 cut(s)	527, 552
NspI	RCATGY	1 cut(s)	392
PagI	TCATGA	1 cut(s)	405
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PctI	GAATGC	1 cut(s)	430
PkrI	GCNGC	5 cut(s)	61, 64, 67, 124, 199
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	513
Psp1406I	AACGTT	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	383
SatI	GCNGC	5 cut(s)	60, 63, 66, 123, 198
Sau3AI	GATC	3 cut(s)	4, 160, 187
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	131
SfaNI	GCATC	2 cut(s)	335, 406
SfcI	CTRYAG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	7 cut(s)	73, 87, 176, 192, 264, 335, 531
SsiI	CCGC	6 cut(s)	14, 60, 63, 70, 123, 185
SspI	AATATT	2 cut(s)	480, 509
SspMI	CTAG	2 cut(s)	38, 449
StyD4I	CCNGG	1 cut(s)	129
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	138, 190
TasI	AATT	7 cut(s)	73, 87, 176, 192, 264, 335, 531
TauI	GCSGC	3 cut(s)	62, 65, 125
Tru1I	TTAA	1 cut(s)	383
Tru9I	TTAA	1 cut(s)	383
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	2 cut(s)	292, 439
TseI	GCWGC	2 cut(s)	65, 197
Tsp45I	GTSAC	2 cut(s)	292, 439
TspDTI	ATGAA	2 cut(s)	394, 422
TspRI	CASTG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	2 cut(s)	38, 449
Zsp2I	ATGCAT	2 cut(s)	527, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.