Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005298

Physical Location & Seq

Genomic Coordinates Reverse (-)

1061152 .. 1069613

Gene Structure 8462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G010500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCGCCGCAGCTCGCAATTACCAGAAGGAATTGCTTGCCAATGAAAAGGCACCGGCCACGAGCTCTGTCAACCAGGAAGTCGACCTTGACGAGTTGATGGATGATCCTGAGCTTGAAAAATTGCATGCGGATCGGATTGCTGCTCTAAAGAATATAGGGACTGAAGGGGATTTTTTAGGTGAAGTTACTGGGACTGAAAAAGCCATCTGCCACTTCTATCACCAGGAGTTCTATAGATGCAAGATAATGGATAAGCATTTGAAGACCCTTGCTTCAAAGCATGTTGATACCAAGTTCATCAAGCTGGATGCAGAGGTTTGCCTTTTTGGAAAAGGAGTTGTTGTGGATAGGTTGGTTGGATTTCAAGATATGGGAGGAAAAGATGATTTCAGCACAAGGGCACTTGAGGTTGTACTAATCAAGAAAGGTATAATTAGTGAGAAGAAAGGGGAGGATGATGAAGATGATGGATATCATGAAGGTAGTCGCAGGATGGTGAGACCCTCTGTGAATCTTGATGATTCTGATTCAGACTTGAAAAATAAAAAAAAGAATAAAAAAAAAAGAATAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007000 GO:0007010 GO:0007017 GO:0007049 GO:0008092 GO:0008150 GO:0008152 GO:0008616 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009987 GO:0015631 GO:0016043 GO:0016049 GO:0018130 GO:0019438 GO:0022402 GO:0030865 GO:0031122 GO:0032506 GO:0034404 GO:0034641 GO:0034654 GO:0040007 GO:0042455 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043622 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046116 GO:0046483 GO:0048285 GO:0048487 GO:0051211 GO:0051301 GO:0055086 GO:0061640 GO:0071704 GO:0071840 GO:0097435 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1902410 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

194

Amino Acids

21.8

Weight (kDa)

6.33

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50960 AT3G50960 AT5G66410
fragaria_vesca	FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_1g12650 FvH4_5g33310
malus_domestica	MD02G1141000.v1.1 MD15G1253500.v1.1
prunus_persica	Prupe.5G010500_v2.0.a1 Prupe.5G010500_v2.0.a1 Prupe.6G150600_v2.0.a1 Prupe.6G150600_v2.0.a1
pyrus_communis	pycom02g11100 pycom15g22330
rosa_chinensis	RchiOBHm_Chr2g0100611
rosa_laevigata	RLG00000016988
rosa_multiflora	Rmu_sc0000528.1_g000004 Rmu_sc0001497.1_g000002
rosa_roxburghii	Rroxscaffold_2G00142090
rosa_rugosa	Rorug02G0090200 Rorug02G0090300 Rorug02G0090400
rosa_samantha	Rh2AG139100 Rh2BG142400 Rh2CG144700 Rh2DG144100
rosa_wichuraiana	Rw2G010900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	3 cut(s)	6, 9, 131
AclWI	GGATC	2 cut(s)	101, 141
AcoI	YGGCCR	2 cut(s)	3, 57
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	417
AgsI	TTSAA	5 cut(s)	119, 265, 279, 368, 541
AjnI	CCWGG	2 cut(s)	75, 225
AluBI	AGCT	4 cut(s)	14, 66, 115, 307
AluI	AGCT	4 cut(s)	14, 66, 115, 307
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	496
AlwI	GGATC	2 cut(s)	101, 141
AoxI	GGCC	2 cut(s)	3, 57
ApeKI	GCWGC	2 cut(s)	11, 143
AsuHPI	GGTGA	3 cut(s)	194, 215, 511
BaeGI	GKGCMC	1 cut(s)	406
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	68
BauI	CACGAG	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	23, 130
BccI	CCATC	4 cut(s)	94, 215, 464, 490
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	2 cut(s)	77, 227
BcoDI	GTCTC	1 cut(s)	496
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	4 cut(s)	6, 9, 12, 144
BlsI	GCNGC	4 cut(s)	7, 10, 13, 145
Bme1390I	CCNGG	2 cut(s)	77, 227
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	77, 227
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	230, 301
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	77, 227
BseGI	GGATG	4 cut(s)	109, 316, 463, 501
BseJI	GATNNNNATC	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	23, 130
BshFI	GGCC	2 cut(s)	5, 59
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	2 cut(s)	175, 208
BsmAI	GTCTC	1 cut(s)	496
BsmFI	GGGAC	2 cut(s)	175, 208
BsnI	GGCC	2 cut(s)	5, 59
Bso31I	GGTCTC	1 cut(s)	496
Bsp1286I	GDGCHC	2 cut(s)	68, 406
Bsp143I	GATC	2 cut(s)	106, 133
BspACI	CCGC	3 cut(s)	6, 9, 131
BspANI	GGCC	2 cut(s)	5, 59
BspCNI	CTCAG	1 cut(s)	103
BspHI	TCATGA	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	2 cut(s)	101, 141
BspT107I	GGYRCC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	496
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	55
BssMI	GATC	2 cut(s)	106, 133
BssSI	CACGAG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	77, 227
BstC8I	GCNNGC	3 cut(s)	16, 39, 129
BstDEI	CTNAG	1 cut(s)	111
BstF5I	GGATG	4 cut(s)	109, 316, 463, 501
BstKTI	GATC	2 cut(s)	109, 136
BstMAI	GTCTC	1 cut(s)	496
BstMBI	GATC	2 cut(s)	106, 133
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	77, 227
BstNSI	RCATGY	2 cut(s)	131, 287
BstSCI	CCNGG	2 cut(s)	75, 225
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	406
BstV1I	GCAGC	2 cut(s)	23, 130
BstV2I	GAAGAC	1 cut(s)	272
BsuRI	GGCC	2 cut(s)	5, 59
BtsCI	GGATG	4 cut(s)	109, 316, 463, 501
Cac8I	GCNNGC	3 cut(s)	16, 39, 129
CciI	TCATGA	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	3 cut(s)	128, 284, 479
CviJI	RGCY	7 cut(s)	5, 14, 59, 66, 115, 206, 307
CviKI_1	RGCY	7 cut(s)	5, 14, 59, 66, 115, 206, 307
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	108, 135
DpnII	GATC	2 cut(s)	106, 133
EaeI	YGGCCR	2 cut(s)	3, 57
Ecl136II	GAGCTC	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	496
Eco32I	GATATC	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	186
EcoICRI	GAGCTC	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	75, 225
EcoRV	GATATC	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	3 cut(s)	131, 287, 482
FaiI	YATR	7 cut(s)	129, 158, 237, 285, 374, 434, 480
FalI	AAGNNNNNCTT	2 cut(s)	72, 104
FaqI	GGGAC	2 cut(s)	175, 208
FatI	CATG	3 cut(s)	127, 283, 478
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	6, 9, 12, 144
FokI	GGATG	4 cut(s)	116, 323, 470, 508
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	4 cut(s)	6, 9, 12, 144
GluI	GCNGC	4 cut(s)	6, 9, 12, 144
HaeIII	GGCC	2 cut(s)	5, 59
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	3 cut(s)	131, 287, 482
HincII	GTYRAC	2 cut(s)	73, 85
HindII	GTYRAC	2 cut(s)	73, 85
HinfI	GANTC	3 cut(s)	514, 524, 530
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	3 cut(s)	194, 215, 511
Hpy166II	GTNNAC	2 cut(s)	73, 85
Hpy188I	TCNGA	3 cut(s)	138, 529, 535
Hpy188III	TCNNGA	5 cut(s)	110, 368, 424, 479, 518
Hpy8I	GTNNAC	2 cut(s)	73, 85
HpyAV	CCTTC	3 cut(s)	22, 161, 476
HpyCH4V	TGCA	3 cut(s)	127, 243, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	131, 287, 482
Kzo9I	GATC	2 cut(s)	106, 133
Lsp1109I	GCAGC	2 cut(s)	23, 130
LweI	GCATC	2 cut(s)	230, 301
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	2 cut(s)	108, 135
MboI	GATC	2 cut(s)	106, 133
MboII	GAAGA	3 cut(s)	277, 457, 476
MhlI	GDGCHC	2 cut(s)	68, 406
MluCI	AATT	4 cut(s)	19, 32, 122, 435
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	5 cut(s)	310, 371, 403, 448, 517
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	77, 227
MvaI	CCWGG	2 cut(s)	77, 227
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	2 cut(s)	106, 133
NlaIII	CATG	3 cut(s)	131, 287, 482
NlaIV	GGNNCC	1 cut(s)	54
NspI	RCATGY	2 cut(s)	131, 287
PaeI	GCATGC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	478
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	514, 524, 530
PkrI	GCNGC	4 cut(s)	7, 10, 13, 145
Psp124BI	GAGCTC	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	75, 225
PspGI	CCWGG	2 cut(s)	75, 225
PspN4I	GGNNCC	1 cut(s)	54
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	68
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	4 cut(s)	6, 9, 12, 144
Sau3AI	GATC	2 cut(s)	106, 133
ScrFI	CCNGG	2 cut(s)	77, 227
SduI	GDGCHC	2 cut(s)	68, 406
SfaNI	GCATC	2 cut(s)	230, 301
SfcI	CTRYAG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SphI	GCATGC	1 cut(s)	131
Sse9I	AATT	4 cut(s)	19, 32, 122, 435
SsiI	CCGC	3 cut(s)	6, 9, 131
SstI	GAGCTC	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	75, 225
TaqI	TCGA	1 cut(s)	84
TasI	AATT	4 cut(s)	19, 32, 122, 435
TatI	WGTACW	1 cut(s)	415
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	3 cut(s)	514, 524, 530
TseI	GCWGC	2 cut(s)	11, 143
TspDTI	ATGAA	4 cut(s)	60, 289, 477, 495
XceI	RCATGY	2 cut(s)	131, 287
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.