Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010261

Physical Location & Seq

Genomic Coordinates Reverse (-)

18946641 .. 18948197

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGTTTCGGTGCAATTAGATCGATTTTGCGTCCATTGTCGAGAACCTTAGTTTCGCGTGCCGTCGTTAACTACTCGTCTGCGCCGTTCAATGCGACGATTCCGGCTGCTAAACCCGAGTTATGTTCCTTCTTCGGTGGATCGATGACTCATTTGAGGTTACCATGGATTCCAATGGCTAACCATTTTCATAGCTTAAGCTTGACTGATACTCGGCTCCCGAAGAGACGACCCATGACTCATCCCAAGAGGAAAAGATCCAAATTGAAACCTCCAGGGCCTTATGCATACGTTCAATATACACCTGGCCAGCCAATTTCTTCAAACAATCCTAATGAGGGAAGTGTGAAGAGAAGAAATGCGAAGAAGCGCATAGGGCAGCGTCGTGCTTTTATACTGTCTGAGAAGAAGAAGAGGCAAGCGCTGGTGCAAGAGGCGAAGAGGAAGAAGAGAATTAAGCAAGTGGAACGTAAGATGGCTGCTGTCGCTAGGGACCGAGCATGGGCTGAAAGACTGATTGAGCTTCAACAGCTGGAAGAAGAGAAGAAGAAATCAATGTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.53

Weight (kDa)

11.45

Isoelectric Point (pI)

69.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51010
fragaria_vesca	FvH4_2g15150 FvH4_2g15150 FvH4_2g15150 FvH4_4g16440
malus_domestica	MD05G1010700.v1.1 MD10G1009400.v1.1
prunus_persica	Prupe.8G013400_v2.0.a1
pyrus_communis	pycom05g00570
rosa_chinensis	RchiOBHm_Chr6g0277811
rosa_laevigata	RLG00000013267
rosa_multiflora	Rmu_sc0002211.1_g000003 Rmu_sc0006114.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190910
rosa_rugosa	Rorug06G0111300.1 Rorug06G0111400
rosa_samantha	Rh6AG222300 Rh6BG225600 Rh6CG228400 Rh6DG219300
rosa_wichuraiana	Rw6G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AclWI	GGATC	2 cut(s)	148, 252
AcoI	YGGCCR	1 cut(s)	307
AfeI	AGCGCT	1 cut(s)	423
AfiI	CCNNNNNNNGG	2 cut(s)	338, 502
AflII	CTTAAG	1 cut(s)	196
AgsI	TTSAA	5 cut(s)	91, 268, 296, 324, 527
AjnI	CCWGG	2 cut(s)	274, 304
AluBI	AGCT	4 cut(s)	195, 201, 523, 532
AluI	AGCT	4 cut(s)	195, 201, 523, 532
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	2 cut(s)	148, 252
Ama87I	CYCGRG	1 cut(s)	116
Aor51HI	AGCGCT	1 cut(s)	423
AoxI	GGCC	2 cut(s)	278, 307
ApeKI	GCWGC	3 cut(s)	107, 379, 479
AspLEI	GCGC	3 cut(s)	85, 372, 424
AspS9I	GGNCC	2 cut(s)	278, 493
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	493
BalI	TGGCCA	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	94, 391, 466
BccI	CCATC	1 cut(s)	469
BceAI	ACGGC	2 cut(s)	47, 70
BcgI	CGANNNNNNTGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	276, 306
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	425
BfrI	CTTAAG	1 cut(s)	196
BisI	GCNGC	3 cut(s)	108, 380, 480
BlsI	GCNGC	3 cut(s)	109, 381, 481
Bme1390I	CCNGG	2 cut(s)	276, 306
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	2 cut(s)	278, 493
BmiI	GGNNCC	2 cut(s)	218, 494
BmrFI	CCNGG	2 cut(s)	276, 306
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	258
Bsa29I	ATCGAT	2 cut(s)	23, 143
BsaJI	CCNNGG	2 cut(s)	164, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 502
BseBI	CCWGG	2 cut(s)	276, 306
BseCI	ATCGAT	2 cut(s)	23, 143
BseDI	CCNNGG	2 cut(s)	164, 275
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	338, 502
BseMII	CTCAG	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	94, 391, 466
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	280, 309
BshVI	ATCGAT	2 cut(s)	23, 143
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	104
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	338, 502
BsmAI	GTCTC	1 cut(s)	220
BsmBI	CGTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	280, 309
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	20, 140, 257
Bsp19I	CCATGG	1 cut(s)	164
BspANI	GGCC	2 cut(s)	280, 309
BspCNI	CTCAG	1 cut(s)	394
BspDI	ATCGAT	2 cut(s)	23, 143
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	218, 494
BspPI	GGATC	2 cut(s)	148, 252
BspTI	CTTAAG	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	164, 275
BssMI	GATC	3 cut(s)	20, 140, 257
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	276, 306
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	6 cut(s)	218, 344, 407, 434, 443, 534
BstAFI	CTTAAG	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	60, 311, 420
BstDEI	CTNAG	2 cut(s)	49, 402
BstDSI	CCRYGG	1 cut(s)	164
BstEII	GGTNACC	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	3 cut(s)	85, 372, 424
BstKTI	GATC	3 cut(s)	23, 143, 260
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	3 cut(s)	20, 140, 257
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 485, 529
BstNI	CCWGG	2 cut(s)	276, 306
BstPI	GGTNACC	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	274, 304
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	94, 391, 466
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
Bsu15I	ATCGAT	2 cut(s)	23, 143
BsuRI	GGCC	2 cut(s)	280, 309
BsuTUI	ATCGAT	2 cut(s)	23, 143
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	60, 311, 420
CfoI	GCGC	3 cut(s)	85, 372, 424
Cfr13I	GGNCC	2 cut(s)	278, 493
ClaI	ATCGAT	2 cut(s)	23, 143
CseI	GACGC	2 cut(s)	20, 371
CviAII	CATG	3 cut(s)	165, 235, 501
DdeI	CTNAG	2 cut(s)	49, 402
DpnI	GATC	3 cut(s)	22, 142, 259
DpnII	GATC	3 cut(s)	20, 140, 257
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	6 cut(s)	218, 344, 407, 434, 443, 534
EarI	CTCTTC	6 cut(s)	218, 344, 407, 434, 443, 534
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	493
Eco47III	AGCGCT	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	116
Eco91I	GGTNACC	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	274, 304
EcoT14I	CCWWGG	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	220
FaeI	CATG	3 cut(s)	168, 238, 504
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	3 cut(s)	164, 234, 500
Fnu4HI	GCNGC	3 cut(s)	108, 380, 480
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	3 cut(s)	108, 380, 480
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	3 cut(s)	84, 371, 423
GluI	GCNGC	3 cut(s)	108, 380, 480
GsuI	CTGGAG	1 cut(s)	258
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	280, 309
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	2 cut(s)	20, 371
HhaI	GCGC	3 cut(s)	85, 372, 424
Hin1II	CATG	3 cut(s)	168, 238, 504
Hin6I	GCGC	3 cut(s)	83, 370, 422
HinP1I	GCGC	3 cut(s)	83, 370, 422
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	4 cut(s)	100, 148, 169, 238
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	3 cut(s)	42, 220, 564
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	3 cut(s)	68, 100, 387
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	2 cut(s)	291, 469
HpyCH4V	TGCA	3 cut(s)	14, 287, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 485, 529
HpyF3I	CTNAG	2 cut(s)	49, 402
HpySE526I	ACGT	2 cut(s)	291, 469
Hsp92II	CATG	3 cut(s)	168, 238, 504
HspAI	GCGC	3 cut(s)	83, 370, 422
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	20, 140, 257
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	8 cut(s)	117, 261, 288, 291, 318, 323, 410, 518
Lsp1109I	GCAGC	3 cut(s)	94, 391, 466
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	291, 469
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	3 cut(s)	22, 142, 259
MboI	GATC	3 cut(s)	20, 140, 257
MflI	RGATCY	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	4 cut(s)	15, 263, 315, 453
MluNI	TGGCCA	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	142, 232
MnlI	CCTC	7 cut(s)	150, 243, 282, 331, 408, 427, 435
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	3 cut(s)	69, 197, 456
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	532
MspCI	CTTAAG	1 cut(s)	196
MspI	CCGG	1 cut(s)	104
MspR9I	CCNGG	2 cut(s)	276, 306
MvaI	CCWGG	2 cut(s)	276, 306
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	376, 485, 529
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	3 cut(s)	20, 140, 257
NlaIII	CATG	3 cut(s)	168, 238, 504
NlaIV	GGNNCC	2 cut(s)	218, 494
NmeAIII	GCCGAG	1 cut(s)	193
NsiI	ATGCAT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	100, 169
PkrI	GCNGC	3 cut(s)	109, 381, 481
PleI	GAGTC	2 cut(s)	142, 232
PpsI	GAGTC	2 cut(s)	142, 232
Psp6I	CCWGG	2 cut(s)	274, 304
PspEI	GGTNACC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	274, 304
PspN4I	GGNNCC	2 cut(s)	218, 494
PspPI	GGNCC	2 cut(s)	278, 493
PsuI	RGATCY	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	532
SaqAI	TTAA	3 cut(s)	69, 197, 456
SatI	GCNGC	3 cut(s)	108, 380, 480
Sau3AI	GATC	3 cut(s)	20, 140, 257
Sau96I	GGNCC	2 cut(s)	278, 493
SchI	GAGTC	2 cut(s)	142, 232
ScrFI	CCNGG	2 cut(s)	276, 306
SinI	GGWCC	1 cut(s)	493
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	4 cut(s)	15, 263, 315, 453
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	274, 304
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	2 cut(s)	294, 472
TaqI	TCGA	3 cut(s)	23, 41, 143
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	15, 263, 315, 453
TfiI	GAWTC	2 cut(s)	100, 169
Tru1I	TTAA	3 cut(s)	69, 197, 456
Tru9I	TTAA	3 cut(s)	69, 197, 456
TseI	GCWGC	3 cut(s)	107, 379, 479
TspDTI	ATGAA	1 cut(s)	179
Vha464I	CTTAAG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	493
XspI	CTAG	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.