Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010261

Physical Location & Seq

Genomic Coordinates Forward (+)

1119827 .. 1122286

Gene Structure 2460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G013400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGTATTTGGAGCCCTAAGGTCCATTGTGCGGCCTTTATCCCGGACCCTAATATCCCGCACCTCGACATGCTCCTTAACCTCATTTGCTGCCAGTTCTGTGTGCCCAAAACCTGAGACCCGCTTCCTTTCTGGTGGCCAAGCTCCGTGGTCTTTTCTGATTTCGAATCATTTCCACAGCTTGACAGATACTCGTTTCCCAAAGCGGCGACCCAGCCTCAAGTCTCGTCGAAAAAGGGCCAGCATAAGACCTCCAGGACCGTATGCTGGGATTCAGTGTGCTCCTGGTGAACCGATAGTTCCTAGTAGACCCAATGAAGGAAGTGTGAAGAGGAGGAATGAGAAGAAGCGCATGAGGCTGCGCCGCGCATTTATATTGTCAGAAAAGAAGAAAAGAAAGGCTCTAGTGCAGGAGGCTAAAAGGAAGAAGAATATAAAGAGAATTGAGAACAAAATGGCTGCTGTGGCAAGGGAAAGAGCATGGGCTGAGAGACTGACTGAGCTGCAGCGACTGGAGGAAGAGAAGCGAAAGTCCATGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.65

Weight (kDa)

11.66

Isoelectric Point (pI)

76.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51010
fragaria_vesca	FvH4_2g15150 FvH4_2g15150 FvH4_2g15150 FvH4_4g16440
malus_domestica	MD05G1010700.v1.1 MD10G1009400.v1.1
prunus_persica	Prupe.8G013400_v2.0.a1
pyrus_communis	pycom05g00570
rosa_chinensis	RchiOBHm_Chr6g0277811
rosa_laevigata	RLG00000013267
rosa_multiflora	Rmu_sc0002211.1_g000003 Rmu_sc0006114.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190910
rosa_rugosa	Rorug06G0111300.1 Rorug06G0111400
rosa_samantha	Rh6AG222300 Rh6BG225600 Rh6CG228400 Rh6DG219300
rosa_wichuraiana	Rw6G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	307
AccII	CGCG	1 cut(s)	366
AciI	CCGC	5 cut(s)	31, 58, 121, 205, 364
AcoI	YGGCCR	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	30, 266, 317
AjnI	CCWGG	2 cut(s)	253, 283
AluBI	AGCT	3 cut(s)	143, 180, 502
AluI	AGCT	3 cut(s)	143, 180, 502
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	3 cut(s)	110, 228, 484
AlwNI	CAGNNNCTG	1 cut(s)	511
AoxI	GGCC	3 cut(s)	32, 136, 237
ApeKI	GCWGC	5 cut(s)	89, 358, 458, 502, 505
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	351, 363, 368
AspS9I	GGNCC	4 cut(s)	21, 45, 237, 257
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	299
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	3 cut(s)	21, 45, 257
AxyI	CCTNAGG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	5 cut(s)	76, 345, 445, 489, 517
BciT130I	CCWGG	2 cut(s)	255, 285
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	3 cut(s)	110, 228, 484
BfaI	CTAG	2 cut(s)	303, 404
BfmI	CTRYAG	1 cut(s)	503
BisI	GCNGC	8 cut(s)	32, 90, 206, 359, 364, 459, 503, 506
BlsI	GCNGC	8 cut(s)	33, 91, 207, 360, 365, 460, 504, 507
Bme1390I	CCNGG	3 cut(s)	43, 255, 285
Bme18I	GGWCC	3 cut(s)	21, 45, 257
BmgT120I	GGNCC	4 cut(s)	21, 45, 237, 257
BmiI	GGNNCC	2 cut(s)	13, 47
BmrFI	CCNGG	3 cut(s)	43, 255, 285
BpmI	CTGGAG	2 cut(s)	237, 533
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	1 cut(s)	43
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	146, 534
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 266, 317
Bse1I	ACTGG	2 cut(s)	93, 516
Bse21I	CCTNAGG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	255, 285
BseDI	CCNNGG	2 cut(s)	146, 534
BseLI	CCNNNNNNNGG	3 cut(s)	30, 266, 317
BseMII	CTCAG	3 cut(s)	105, 477, 489
BseNI	ACTGG	2 cut(s)	93, 516
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	5 cut(s)	76, 345, 445, 489, 517
BseYI	CCCAGC	2 cut(s)	212, 266
BsgI	GTGCAG	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	34, 138, 239
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	30, 266, 317
BsmAI	GTCTC	3 cut(s)	110, 228, 484
BsnI	GGCC	3 cut(s)	34, 138, 239
Bso31I	GGTCTC	1 cut(s)	110
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	3 cut(s)	16, 107, 283
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	5 cut(s)	31, 58, 121, 205, 364
BspANI	GGCC	3 cut(s)	34, 138, 239
BspCNI	CTCAG	3 cut(s)	106, 478, 490
BspFNI	CGCG	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	13, 47
BspMAI	CTGCAG	1 cut(s)	507
BspT104I	TTCGAA	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	93, 516
BssECI	CCNNGG	2 cut(s)	146, 534
BssT1I	CCWWGG	1 cut(s)	534
Bst2UI	CCWGG	2 cut(s)	255, 285
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	2 cut(s)	323, 513
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	4 cut(s)	17, 114, 486, 498
BstDSI	CCRYGG	2 cut(s)	146, 534
BstFNI	CGCG	1 cut(s)	366
BstHHI	GCGC	3 cut(s)	351, 363, 368
BstMAI	GTCTC	3 cut(s)	110, 228, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 464
BstNI	CCWGG	2 cut(s)	255, 285
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	3 cut(s)	41, 253, 283
BstSFI	CTRYAG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	5 cut(s)	76, 345, 445, 489, 517
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	34, 138, 239
BtgI	CCRYGG	2 cut(s)	146, 534
BtsIMutI	CAGTG	1 cut(s)	281
Cac8I	GCNNGC	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	511
CfoI	GCGC	3 cut(s)	351, 363, 368
Cfr13I	GGNCC	4 cut(s)	21, 45, 237, 257
CspCI	CAANNNNNGTGG	2 cut(s)	128, 163
CviAII	CATG	4 cut(s)	69, 352, 480, 535
DdeI	CTNAG	4 cut(s)	17, 114, 486, 498
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	323, 513
EarI	CTCTTC	2 cut(s)	323, 513
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	3 cut(s)	21, 45, 257
Eco81I	CCTNAGG	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	253, 283
EcoT14I	CCWWGG	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	4 cut(s)	72, 355, 483, 538
FaiI	YATR	8 cut(s)	70, 245, 264, 353, 374, 434, 481, 536
FatI	CATG	4 cut(s)	68, 351, 479, 534
FauI	CCCGC	2 cut(s)	65, 128
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	8 cut(s)	32, 90, 206, 359, 364, 459, 503, 506
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	8 cut(s)	32, 90, 206, 359, 364, 459, 503, 506
FspBI	CTAG	2 cut(s)	303, 404
GlaI	GCGC	3 cut(s)	350, 362, 367
GluI	GCNGC	8 cut(s)	32, 90, 206, 359, 364, 459, 503, 506
GsaI	CCCAGC	2 cut(s)	216, 270
GsuI	CTGGAG	2 cut(s)	237, 533
HaeIII	GGCC	3 cut(s)	34, 138, 239
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	3 cut(s)	351, 363, 368
Hin1II	CATG	4 cut(s)	72, 355, 483, 538
Hin6I	GCGC	3 cut(s)	349, 361, 366
HinP1I	GCGC	3 cut(s)	349, 361, 366
HinfI	GANTC	2 cut(s)	166, 271
HpaII	CCGG	1 cut(s)	43
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	290, 308
Hpy188I	TCNGA	2 cut(s)	159, 382
Hpy8I	GTNNAC	2 cut(s)	290, 308
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	409, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 464
HpyF3I	CTNAG	4 cut(s)	17, 114, 486, 498
Hsp92II	CATG	4 cut(s)	72, 355, 483, 538
HspAI	GCGC	3 cut(s)	349, 361, 366
LmnI	GCTCC	4 cut(s)	11, 77, 148, 286
Lsp1109I	GCAGC	5 cut(s)	76, 345, 445, 489, 517
MaeI	CTAG	2 cut(s)	303, 404
MboII	GAAGA	6 cut(s)	340, 355, 400, 436, 439, 530
MhlI	GDGCHC	3 cut(s)	16, 107, 283
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	1 cut(s)	441
MluNI	TGGCCA	1 cut(s)	138
MnlI	CCTC	9 cut(s)	73, 91, 227, 261, 324, 327, 348, 406, 508
Mox20I	TGGCCA	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	1 cut(s)	43
MspR9I	CCNGG	3 cut(s)	43, 255, 285
MteI	GCGCNGCGC	1 cut(s)	364
MvaI	CCWGG	2 cut(s)	255, 285
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	355, 464
NciI	CCSGG	1 cut(s)	43
NcoI	CCATGG	1 cut(s)	534
NlaIII	CATG	4 cut(s)	72, 355, 483, 538
NlaIV	GGNNCC	2 cut(s)	13, 47
NspI	RCATGY	1 cut(s)	72
NspV	TTCGAA	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	166, 271
PfoI	TCCNGGA	2 cut(s)	41, 253
PkrI	GCNGC	8 cut(s)	33, 91, 207, 360, 365, 460, 504, 507
Psp6I	CCWGG	2 cut(s)	253, 283
PspFI	CCCAGC	2 cut(s)	212, 266
PspGI	CCWGG	2 cut(s)	253, 283
PspN4I	GGNNCC	2 cut(s)	13, 47
PspPI	GGNCC	4 cut(s)	21, 45, 237, 257
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	8 cut(s)	32, 90, 206, 359, 364, 459, 503, 506
Sau96I	GGNCC	4 cut(s)	21, 45, 237, 257
ScrFI	CCNGG	3 cut(s)	43, 255, 285
SduI	GDGCHC	3 cut(s)	16, 107, 283
SetI	ASST	8 cut(s)	23, 65, 83, 115, 145, 182, 253, 504
SfcI	CTRYAG	1 cut(s)	503
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	3 cut(s)	21, 45, 257
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	441
SsiI	CCGC	5 cut(s)	31, 58, 121, 205, 364
SspMI	CTAG	2 cut(s)	303, 404
StyD4I	CCNGG	3 cut(s)	41, 253, 283
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	3 cut(s)	65, 164, 229
TasI	AATT	1 cut(s)	441
TauI	GCSGC	3 cut(s)	34, 208, 366
TfiI	GAWTC	2 cut(s)	166, 271
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	5 cut(s)	89, 358, 458, 502, 505
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	21, 45, 257
XceI	RCATGY	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	303, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.