Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010261

Physical Location & Seq

Genomic Coordinates Forward (+)

2143205 .. 2145635

Gene Structure 2431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1010700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTATTCGGAGCCCTAAGGTCCATCGTTCGACCTCTATCAAGAACCCTAATATCCCGAACCTCAACTTCTTCCTTGACGTCCTTTGCTGCCAACTCTGCGTGTCTGAAACCTGAGCTTCGCTTCGTTTCTGGTGGCAGCCAAGCTCCGTGGTTTTTCCCCATTTCCAACTATTTTCACAGCTTGACAGATACTCGTTTCCCCAAACGGCGTCCGACCGACAAGCCACGTCGAAAAAGGGCCAGCGTAAGACCTCCAGGACCATTTGCTGCAGTTCAGTGTGTTCCTGGTGCGCCAATAGTTCCTAATAGACCCAATGAGGGAAGTGTGAAGCGAAGGAATGAGAAGAAGCGCATGAGGCAACGTCGTGCATTTATATTGGCAGAAAAAAAGAAAAGGAAAGCTCTGGTGCAGGAGGCTAAAAGGAAGAAAGTTATAAAGAGAGTTGAGAGAAAAATGGCCGCTGTTGCAAGGGAAAGAGCATGGACTCAAAGACTCGCCGAGCTGCAGAAACAGGAAGAAGAGAAGAAAAAGTCCATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.77

Weight (kDa)

11.75

Isoelectric Point (pI)

68.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51010
fragaria_vesca	FvH4_2g15150 FvH4_2g15150 FvH4_2g15150 FvH4_4g16440
malus_domestica	MD05G1010700.v1.1 MD10G1009400.v1.1
prunus_persica	Prupe.8G013400_v2.0.a1
pyrus_communis	pycom05g00570
rosa_chinensis	RchiOBHm_Chr6g0277811
rosa_laevigata	RLG00000013267
rosa_multiflora	Rmu_sc0002211.1_g000003 Rmu_sc0006114.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190910
rosa_rugosa	Rorug06G0111300.1 Rorug06G0111400
rosa_samantha	Rh6AG222300 Rh6BG225600 Rh6CG228400 Rh6DG219300
rosa_wichuraiana	Rw6G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AatII	GACGTC	1 cut(s)	83
AciI	CCGC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	459
AcyI	GRCGYC	2 cut(s)	80, 211
AfiI	CCNNNNNNNGG	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	256, 286
AluBI	AGCT	5 cut(s)	118, 146, 183, 404, 505
AluI	AGCT	5 cut(s)	118, 146, 183, 404, 505
AoxI	GGCC	2 cut(s)	240, 459
ApeKI	GCWGC	4 cut(s)	89, 138, 269, 505
AspLEI	GCGC	2 cut(s)	295, 354
AspS9I	GGNCC	3 cut(s)	21, 240, 260
AvaII	GGWCC	2 cut(s)	21, 260
AxyI	CCTNAGG	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	16
BbvI	GCAGC	4 cut(s)	76, 150, 256, 492
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	258, 288
BfmI	CTRYAG	2 cut(s)	270, 506
BisI	GCNGC	5 cut(s)	90, 139, 270, 462, 506
BlsI	GCNGC	5 cut(s)	91, 140, 271, 463, 507
Bme1390I	CCNGG	2 cut(s)	258, 288
Bme18I	GGWCC	2 cut(s)	21, 260
BmgBI	CACGTC	1 cut(s)	230
BmgT120I	GGNCC	3 cut(s)	21, 240, 260
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	258, 288
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	114
BsaHI	GRCGYC	2 cut(s)	80, 211
BsaJI	CCNNGG	2 cut(s)	149, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse21I	CCTNAGG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	258, 288
BseDI	CCNNGG	2 cut(s)	149, 537
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	76, 150, 256, 492
BsgI	GTGCAG	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	242, 461
BsiEI	CGRYCG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	320
BsnI	GGCC	2 cut(s)	242, 461
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	2 cut(s)	242, 461
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	13
BspMAI	CTGCAG	2 cut(s)	274, 510
BssECI	CCNNGG	2 cut(s)	149, 537
BssNI	GRCGYC	2 cut(s)	80, 211
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	2 cut(s)	258, 288
Bst6I	CTCTTC	1 cut(s)	516
BstACI	GRCGYC	2 cut(s)	80, 211
BstC8I	GCNNGC	1 cut(s)	244
BstDEI	CTNAG	3 cut(s)	17, 114, 543
BstDSI	CCRYGG	2 cut(s)	149, 537
BstHHI	GCGC	2 cut(s)	295, 354
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 358, 467
BstNI	CCWGG	2 cut(s)	258, 288
BstSCI	CCNGG	2 cut(s)	256, 286
BstSFI	CTRYAG	2 cut(s)	270, 506
BstV1I	GCAGC	4 cut(s)	76, 150, 256, 492
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	242, 461
BtgI	CCRYGG	2 cut(s)	149, 537
BtrI	CACGTC	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	1 cut(s)	244
CfoI	GCGC	2 cut(s)	295, 354
Cfr13I	GGNCC	3 cut(s)	21, 240, 260
CseI	GACGC	1 cut(s)	200
CspCI	CAANNNNNGTGG	2 cut(s)	131, 166
CviAII	CATG	3 cut(s)	355, 483, 538
DdeI	CTNAG	3 cut(s)	17, 114, 543
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	21, 260
Eco81I	CCTNAGG	1 cut(s)	17
EcoRII	CCWGG	2 cut(s)	256, 286
EcoT14I	CCWWGG	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	3 cut(s)	358, 486, 541
FaiI	YATR	5 cut(s)	356, 377, 437, 484, 539
FatI	CATG	3 cut(s)	354, 482, 537
Fnu4HI	GCNGC	5 cut(s)	90, 139, 270, 462, 506
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	5 cut(s)	90, 139, 270, 462, 506
GlaI	GCGC	2 cut(s)	294, 353
GluI	GCNGC	5 cut(s)	90, 139, 270, 462, 506
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	242, 461
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	295, 354
Hin1I	GRCGYC	2 cut(s)	80, 211
Hin1II	CATG	3 cut(s)	358, 486, 541
Hin6I	GCGC	2 cut(s)	293, 352
HinP1I	GCGC	2 cut(s)	293, 352
HinfI	GANTC	2 cut(s)	487, 495
Hpy188I	TCNGA	3 cut(s)	11, 108, 216
Hpy188III	TCNNGA	2 cut(s)	42, 57
Hpy99I	CGWCG	2 cut(s)	234, 369
HpyAV	CCTTC	1 cut(s)	330
HpyCH4IV	ACGT	3 cut(s)	80, 229, 364
HpyCH4V	TGCA	5 cut(s)	272, 371, 412, 470, 508
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 358, 467
HpyF3I	CTNAG	3 cut(s)	17, 114, 543
HpySE526I	ACGT	3 cut(s)	80, 229, 364
Hsp92I	GRCGYC	2 cut(s)	80, 211
Hsp92II	CATG	3 cut(s)	358, 486, 541
HspAI	GCGC	2 cut(s)	293, 352
LmnI	GCTCC	2 cut(s)	11, 151
Lsp1109I	GCAGC	4 cut(s)	76, 150, 256, 492
MaeII	ACGT	3 cut(s)	80, 229, 364
MboII	GAAGA	6 cut(s)	63, 358, 439, 530, 533, 538
MhlI	GDGCHC	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	481, 489
MmeI	TCCRAC	2 cut(s)	192, 239
MnlI	CCTC	6 cut(s)	45, 73, 264, 313, 351, 409
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	2 cut(s)	258, 288
MvaI	CCWGG	2 cut(s)	258, 288
MwoI	GCNNNNNNNGC	3 cut(s)	98, 358, 467
NcoI	CCATGG	1 cut(s)	537
NlaIII	CATG	3 cut(s)	358, 486, 541
NlaIV	GGNNCC	1 cut(s)	13
NmeAIII	GCCGAG	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	256
PkrI	GCNGC	5 cut(s)	91, 140, 271, 463, 507
PleI	GAGTC	2 cut(s)	481, 489
PpsI	GAGTC	2 cut(s)	481, 489
PsiI	TTATAA	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	256, 286
PspGI	CCWGG	2 cut(s)	256, 286
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	3 cut(s)	21, 240, 260
PstI	CTGCAG	2 cut(s)	274, 510
SatI	GCNGC	5 cut(s)	90, 139, 270, 462, 506
Sau96I	GGNCC	3 cut(s)	21, 240, 260
SchI	GAGTC	2 cut(s)	481, 489
ScrFI	CCNGG	2 cut(s)	258, 288
SduI	GDGCHC	1 cut(s)	16
SfcI	CTRYAG	2 cut(s)	270, 506
SinI	GGWCC	2 cut(s)	21, 260
SsiI	CCGC	1 cut(s)	462
StyD4I	CCNGG	2 cut(s)	256, 286
StyI	CCWWGG	1 cut(s)	537
TaiI	ACGT	3 cut(s)	83, 232, 367
TaqI	TCGA	2 cut(s)	31, 232
TaqII	GACCGA	1 cut(s)	233
TauI	GCSGC	1 cut(s)	464
TscAI	CASTG	1 cut(s)	284
TseI	GCWGC	4 cut(s)	89, 138, 269, 505
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	284
VpaK11BI	GGWCC	2 cut(s)	21, 260
ZraI	GACGTC	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.