Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010261

Physical Location & Seq

Genomic Coordinates Reverse (-)

38779200 .. 38783259

Gene Structure 4060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G019420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGATTTGGAGCATTAAGGTCCTTGTGCCGACCCCTATCACGAACCCTAATATCTCGCACCCCAACTTGCTCCGTAACATCATTTGCTGCCAACTCTGTGCACCTGAAACCTGAGCTCCGCTTTGTTTCCGGTGGCCAGGCTCCATGGTTTCTTCCAATTTTGAACCATTTTCACAGCTTGACGGACACTCGTTTCCCAAAACGGCGACCCATGGATAAGCCTCGTCGAAAAAGGTCCAGCATAAGACCTCCTGGACCGTATGTTGGGGTTCAGTATGTTCCTGGTGAACCAATAGTGCCTAGCAGACCCAATGAAGGAAGTGTGAAGAGGAGGAATGAGAAGAAGCGCATGAGGCAGCGTCGTGCATTTATTTTGTCAGAGAAAAAGAAGAGGAAAGCTCTGGTGCAGGAGGCCAAAAGAAAGAAAAACATTAAGAGAATCGAGAATAAAATGGCTGCTGTTGCAAGAGACAGAGCGTGGGCTCAGAGACTGGCTGAGCTGCAGCAGTTGGAGGAAGAGAAGAAGAAATCCATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

20.81

Weight (kDa)

11.55

Isoelectric Point (pI)

73.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51010
fragaria_vesca	FvH4_2g15150 FvH4_2g15150 FvH4_2g15150 FvH4_4g16440
malus_domestica	MD05G1010700.v1.1 MD10G1009400.v1.1
prunus_persica	Prupe.8G013400_v2.0.a1
pyrus_communis	pycom05g00570
rosa_chinensis	RchiOBHm_Chr6g0277811
rosa_laevigata	RLG00000013267
rosa_multiflora	Rmu_sc0002211.1_g000003 Rmu_sc0006114.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190910
rosa_rugosa	Rorug06G0111300.1 Rorug06G0111400
rosa_samantha	Rh6AG222300 Rh6BG225600 Rh6CG228400 Rh6DG219300
rosa_wichuraiana	Rw6G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	266, 317
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	3 cut(s)	138, 253, 283
AluBI	AGCT	4 cut(s)	118, 180, 401, 502
AluI	AGCT	4 cut(s)	118, 180, 401, 502
Alw21I	GWGCWC	2 cut(s)	105, 120
Alw26I	GTCTC	2 cut(s)	465, 484
Alw44I	GTGCAC	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	493
AoxI	GGCC	2 cut(s)	136, 414
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	5 cut(s)	89, 358, 458, 502, 505
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	3 cut(s)	21, 237, 257
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	3 cut(s)	21, 237, 257
BaeGI	GKGCMC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	138
BanII	GRGCYC	2 cut(s)	120, 487
Bbv12I	GWGCWC	2 cut(s)	105, 120
BbvI	GCAGC	5 cut(s)	76, 370, 445, 489, 517
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	3 cut(s)	140, 255, 285
BcoDI	GTCTC	2 cut(s)	465, 484
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	503
BisI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	5 cut(s)	91, 360, 460, 504, 507
Bme1390I	CCNGG	3 cut(s)	140, 255, 285
Bme18I	GGWCC	3 cut(s)	21, 237, 257
BmgT120I	GGNCC	3 cut(s)	21, 237, 257
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	3 cut(s)	140, 255, 285
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	146, 213, 534
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 317
Bse1I	ACTGG	1 cut(s)	498
BseBI	CCWGG	3 cut(s)	140, 255, 285
BseDI	CCNNGG	3 cut(s)	146, 213, 534
BseLI	CCNNNNNNNGG	2 cut(s)	266, 317
BseMII	CTCAG	3 cut(s)	105, 489, 500
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	5 cut(s)	76, 370, 445, 489, 517
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	2 cut(s)	138, 416
BsiHKAI	GWGCWC	2 cut(s)	105, 120
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	266, 317
BsmAI	GTCTC	2 cut(s)	465, 484
BsnI	GGCC	2 cut(s)	138, 416
Bsp1286I	GDGCHC	3 cut(s)	105, 120, 487
Bsp1720I	GCTNAGC	1 cut(s)	498
Bsp19I	CCATGG	3 cut(s)	146, 213, 534
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	138, 416
BspCNI	CTCAG	3 cut(s)	106, 490, 499
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	3 cut(s)	146, 213, 534
BssT1I	CCWWGG	3 cut(s)	146, 213, 534
Bst2UI	CCWGG	3 cut(s)	140, 255, 285
Bst4CI	ACNGT	1 cut(s)	261
Bst6I	CTCTTC	3 cut(s)	323, 386, 513
BstDEI	CTNAG	3 cut(s)	114, 486, 498
BstDSI	CCRYGG	3 cut(s)	146, 213, 534
BstHHI	GCGC	1 cut(s)	351
BstMAI	GTCTC	2 cut(s)	465, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 464
BstNI	CCWGG	3 cut(s)	140, 255, 285
BstSCI	CCNGG	3 cut(s)	138, 253, 283
BstSFI	CTRYAG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	5 cut(s)	76, 370, 445, 489, 517
BsuRI	GGCC	2 cut(s)	138, 416
BtgI	CCRYGG	3 cut(s)	146, 213, 534
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	3 cut(s)	21, 237, 257
CseI	GACGC	1 cut(s)	350
CviAII	CATG	4 cut(s)	147, 214, 352, 535
DdeI	CTNAG	3 cut(s)	114, 486, 498
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	323, 386, 513
EarI	CTCTTC	3 cut(s)	323, 386, 513
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	146, 213, 534
Eco24I	GRGCYC	2 cut(s)	120, 487
Eco47I	GGWCC	3 cut(s)	21, 237, 257
Eco53kI	GAGCTC	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	118
EcoO109I	RGGNCCY	1 cut(s)	21
EcoRII	CCWGG	3 cut(s)	138, 253, 283
EcoT14I	CCWWGG	3 cut(s)	146, 213, 534
EcoT38I	GRGCYC	2 cut(s)	120, 487
ErhI	CCWWGG	3 cut(s)	146, 213, 534
FaeI	CATG	4 cut(s)	150, 217, 355, 538
FaiI	YATR	7 cut(s)	148, 215, 245, 264, 279, 353, 536
FatI	CATG	4 cut(s)	146, 213, 351, 534
Fnu4HI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
FriOI	GRGCYC	2 cut(s)	120, 487
Fsp4HI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
HaeIII	GGCC	2 cut(s)	138, 416
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	350
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	4 cut(s)	150, 217, 355, 538
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	103, 290
Hpy188I	TCNGA	2 cut(s)	382, 489
Hpy188III	TCNNGA	2 cut(s)	42, 445
Hpy8I	GTNNAC	2 cut(s)	103, 290
Hpy99I	CGWCG	2 cut(s)	231, 366
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4V	TGCA	5 cut(s)	103, 368, 409, 467, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 464
HpyF3I	CTNAG	3 cut(s)	114, 486, 498
Hsp92II	CATG	4 cut(s)	150, 217, 355, 538
HspAI	GCGC	1 cut(s)	349
LmnI	GCTCC	4 cut(s)	11, 77, 123, 148
Lsp1109I	GCAGC	5 cut(s)	76, 370, 445, 489, 517
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	1 cut(s)	76
MboII	GAAGA	7 cut(s)	146, 340, 355, 403, 530, 535, 538
MhlI	GDGCHC	3 cut(s)	105, 120, 487
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	1 cut(s)	159
MluNI	TGGCCA	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	8 cut(s)	234, 261, 324, 327, 348, 387, 406, 508
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	3 cut(s)	17, 435, 541
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	140, 255, 285
MvaI	CCWGG	3 cut(s)	140, 255, 285
MwoI	GCNNNNNNNGC	2 cut(s)	355, 464
NcoI	CCATGG	3 cut(s)	146, 213, 534
NlaIII	CATG	4 cut(s)	150, 217, 355, 538
NlaIV	GGNNCC	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	441
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	5 cut(s)	91, 360, 460, 504, 507
PpuMI	RGGWCCY	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	21
Psp6I	CCWGG	3 cut(s)	138, 253, 283
PspGI	CCWGG	3 cut(s)	138, 253, 283
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	21, 237, 257
PspPPI	RGGWCCY	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	493
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	17, 435, 541
SatI	GCNGC	5 cut(s)	90, 359, 459, 503, 506
Sau96I	GGNCC	3 cut(s)	21, 237, 257
ScrFI	CCNGG	3 cut(s)	140, 255, 285
SduI	GDGCHC	3 cut(s)	105, 120, 487
SetI	ASST	9 cut(s)	23, 108, 115, 120, 182, 239, 253, 403, 504
SfcI	CTRYAG	1 cut(s)	503
SinI	GGWCC	3 cut(s)	21, 237, 257
Sse9I	AATT	1 cut(s)	159
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	3 cut(s)	138, 253, 283
StyI	CCWWGG	3 cut(s)	146, 213, 534
TaaI	ACNGT	1 cut(s)	261
TaqI	TCGA	2 cut(s)	229, 444
TasI	AATT	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	17, 435, 541
Tru9I	TTAA	3 cut(s)	17, 435, 541
TseI	GCWGC	5 cut(s)	89, 358, 458, 502, 505
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	2 cut(s)	64, 200
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	3 cut(s)	21, 237, 257
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.