Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010261

Physical Location & Seq

Genomic Coordinates Reverse (-)

13281014 .. 13283421

Gene Structure 2408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGGTTTGGAGCACTAAGATCCTTGTGGCGACCCCTATCACGAACCCTAATTTCTCGCACCTCGAGTTCCTCCGTAACGTCATTTTCTGCCGACTATGTGCACCTGAAACCTGAGCTCCGCTCTGTCCCCAGTGGTCAGGCTCCATGGTTTCTTCCGATCTTGAACCATTTTCACAGCTTGACAGACACTCGTTTCCCAAAACGGCGTCCCAGTGATAAGCCTCGTCGAAAAAGATCCAGCATAAGACCGCCTGGACCATATGCTGGGGTTCAGTATGTTCCTGGTGAACCAGTAGTGCCTAGCAGACCCAATGAAGGTAGTGTGAAGAGGAGGAATGATAAGAAGCGCATGAGGCAGCGCCATGCATTTATTTTGTCAGAGAAAAAGAAGAGGAAAGCTCTGGTACAGGAAGCCAAAAGAAAGAAAAACATTAAGAGAATTGAGAATAAAATGGCTGCTGTTGCAAGAGACAGAGCGTGGGCTCTGAGACTGGCTGAGCTGCAGCAGTTGGAGGAAGAGAAGAAGAAATCCATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.79

Weight (kDa)

11.49

Isoelectric Point (pI)

85.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51010
fragaria_vesca	FvH4_2g15150 FvH4_2g15150 FvH4_2g15150 FvH4_4g16440
malus_domestica	MD05G1010700.v1.1 MD10G1009400.v1.1
prunus_persica	Prupe.8G013400_v2.0.a1
pyrus_communis	pycom05g00570
rosa_chinensis	RchiOBHm_Chr6g0277811
rosa_laevigata	RLG00000013267
rosa_multiflora	Rmu_sc0002211.1_g000003 Rmu_sc0006114.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190910
rosa_rugosa	Rorug06G0111300.1 Rorug06G0111400
rosa_samantha	Rh6AG222300 Rh6BG225600 Rh6CG228400 Rh6DG219300
rosa_wichuraiana	Rw6G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	123
AciI	CCGC	2 cut(s)	121, 251
AclWI	GGATC	2 cut(s)	15, 231
AcyI	GRCGYC	1 cut(s)	208
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	266, 317
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	253, 283
AluBI	AGCT	4 cut(s)	118, 180, 401, 502
AluI	AGCT	4 cut(s)	118, 180, 401, 502
Alw21I	GWGCWC	3 cut(s)	16, 105, 120
Alw26I	GTCTC	2 cut(s)	465, 484
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	2 cut(s)	15, 231
Ama87I	CYCGRG	1 cut(s)	64
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	4 cut(s)	358, 458, 502, 505
AspLEI	GCGC	2 cut(s)	351, 363
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	299
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	105
BanII	GRGCYC	2 cut(s)	120, 487
Bbv12I	GWGCWC	3 cut(s)	16, 105, 120
BbvI	GCAGC	4 cut(s)	370, 445, 489, 517
BceAI	ACGGC	1 cut(s)	221
BciT130I	CCWGG	2 cut(s)	255, 285
BcoDI	GTCTC	2 cut(s)	465, 484
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	503
BfoI	RGCGCY	1 cut(s)	364
BisI	GCNGC	4 cut(s)	359, 459, 503, 506
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	4 cut(s)	360, 460, 504, 507
Bme1390I	CCNGG	2 cut(s)	255, 285
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	255, 285
BmrI	ACTGGG	2 cut(s)	126, 207
BmuI	ACTGGG	2 cut(s)	126, 207
BplI	GAGNNNNNCTC	4 cut(s)	107, 139, 385, 417
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	146, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	266, 317
Bse1I	ACTGG	4 cut(s)	132, 213, 293, 498
BseBI	CCWGG	2 cut(s)	255, 285
BseDI	CCNNGG	2 cut(s)	146, 534
BseLI	CCNNNNNNNGG	2 cut(s)	266, 317
BseMII	CTCAG	3 cut(s)	105, 479, 489
BseNI	ACTGG	4 cut(s)	132, 213, 293, 498
BseRI	GAGGAG	1 cut(s)	346
BseSI	GKGCMC	1 cut(s)	105
BseXI	GCAGC	4 cut(s)	370, 445, 489, 517
BseYI	CCCAGC	1 cut(s)	266
BsiHKAI	GWGCWC	3 cut(s)	16, 105, 120
BsiHKCI	CYCGRG	1 cut(s)	64
BslFI	GGGAC	2 cut(s)	113, 195
BslI	CCNNNNNNNGG	2 cut(s)	266, 317
BsmAI	GTCTC	2 cut(s)	465, 484
BsmFI	GGGAC	2 cut(s)	113, 195
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	4 cut(s)	16, 105, 120, 487
Bsp143I	GATC	3 cut(s)	20, 159, 236
Bsp1720I	GCTNAGC	1 cut(s)	498
Bsp19I	CCATGG	2 cut(s)	146, 534
BspACI	CCGC	2 cut(s)	121, 251
BspCNI	CTCAG	3 cut(s)	106, 480, 490
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	507
BspPI	GGATC	2 cut(s)	15, 231
BsrBI	CCGCTC	1 cut(s)	123
BsrI	ACTGG	4 cut(s)	132, 213, 293, 498
BssECI	CCNNGG	2 cut(s)	146, 534
BssMI	GATC	3 cut(s)	20, 159, 236
BssNI	GRCGYC	1 cut(s)	208
BssT1I	CCWWGG	2 cut(s)	146, 534
Bst2UI	CCWGG	2 cut(s)	255, 285
Bst6I	CTCTTC	3 cut(s)	323, 386, 513
BstACI	GRCGYC	1 cut(s)	208
BstDEI	CTNAG	4 cut(s)	17, 114, 488, 498
BstDSI	CCRYGG	2 cut(s)	146, 534
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	2 cut(s)	351, 363
BstKTI	GATC	3 cut(s)	23, 162, 239
BstMAI	GTCTC	2 cut(s)	465, 484
BstMBI	GATC	3 cut(s)	20, 159, 236
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 464
BstNI	CCWGG	2 cut(s)	255, 285
BstSCI	CCNGG	2 cut(s)	253, 283
BstSFI	CTRYAG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	105
BstV1I	GCAGC	4 cut(s)	370, 445, 489, 517
BstX2I	RGATCY	2 cut(s)	20, 236
BstYI	RGATCY	2 cut(s)	20, 236
BtgI	CCRYGG	2 cut(s)	146, 534
BtsIMutI	CAGTG	2 cut(s)	139, 220
CfoI	GCGC	2 cut(s)	351, 363
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	4 cut(s)	147, 352, 365, 535
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	4 cut(s)	17, 114, 488, 498
DpnI	GATC	3 cut(s)	22, 161, 238
DpnII	GATC	3 cut(s)	20, 159, 236
Eam1104I	CTCTTC	3 cut(s)	323, 386, 513
EarI	CTCTTC	3 cut(s)	323, 386, 513
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	146, 534
Eco24I	GRGCYC	2 cut(s)	120, 487
Eco47I	GGWCC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	64
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	253, 283
EcoT14I	CCWWGG	2 cut(s)	146, 534
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	2 cut(s)	120, 487
ErhI	CCWWGG	2 cut(s)	146, 534
FaeI	CATG	4 cut(s)	150, 355, 368, 538
FaiI	YATR	9 cut(s)	99, 148, 245, 262, 264, 279, 353, 366, 536
FaqI	GGGAC	2 cut(s)	113, 195
FatI	CATG	4 cut(s)	146, 351, 364, 534
FauNDI	CATATG	1 cut(s)	262
Fnu4HI	GCNGC	4 cut(s)	359, 459, 503, 506
FriOI	GRGCYC	2 cut(s)	120, 487
Fsp4HI	GCNGC	4 cut(s)	359, 459, 503, 506
FspBI	CTAG	1 cut(s)	303
GlaI	GCGC	2 cut(s)	350, 362
GluI	GCNGC	4 cut(s)	359, 459, 503, 506
GsaI	CCCAGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	364
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	2 cut(s)	351, 363
Hin1I	GRCGYC	1 cut(s)	208
Hin1II	CATG	4 cut(s)	150, 355, 368, 538
Hin6I	GCGC	2 cut(s)	349, 361
HinP1I	GCGC	2 cut(s)	349, 361
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	103, 290
Hpy188I	TCNGA	3 cut(s)	159, 382, 489
Hpy188III	TCNNGA	2 cut(s)	42, 163
Hpy8I	GTNNAC	2 cut(s)	103, 290
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	311
HpyCH4IV	ACGT	1 cut(s)	80
HpyCH4V	TGCA	4 cut(s)	103, 368, 467, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 464
HpyF3I	CTNAG	4 cut(s)	17, 114, 488, 498
HpySE526I	ACGT	1 cut(s)	80
Hsp92I	GRCGYC	1 cut(s)	208
Hsp92II	CATG	4 cut(s)	150, 355, 368, 538
HspAI	GCGC	2 cut(s)	349, 361
Kzo9I	GATC	3 cut(s)	20, 159, 236
LmnI	GCTCC	3 cut(s)	11, 123, 148
Lsp1109I	GCAGC	4 cut(s)	370, 445, 489, 517
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	22, 161, 238
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	3 cut(s)	20, 159, 236
MboII	GAAGA	6 cut(s)	146, 340, 403, 530, 535, 538
MflI	RGATCY	2 cut(s)	20, 236
MhlI	GDGCHC	4 cut(s)	16, 105, 120, 487
MluCI	AATT	2 cut(s)	51, 441
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	8 cut(s)	73, 82, 234, 324, 327, 348, 387, 508
Mph1103I	ATGCAT	1 cut(s)	370
MseI	TTAA	2 cut(s)	435, 541
MspR9I	CCNGG	2 cut(s)	255, 285
MvaI	CCWGG	2 cut(s)	255, 285
MwoI	GCNNNNNNNGC	2 cut(s)	355, 464
NcoI	CCATGG	2 cut(s)	146, 534
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	3 cut(s)	20, 159, 236
NlaIII	CATG	4 cut(s)	150, 355, 368, 538
NlaIV	GGNNCC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	370
PaeR7I	CTCGAG	1 cut(s)	64
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	360, 460, 504, 507
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	253, 283
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	2 cut(s)	253, 283
PspN4I	GGNNCC	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	257
PspXI	VCTCGAGB	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	20, 236
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	435, 541
SatI	GCNGC	4 cut(s)	359, 459, 503, 506
Sau3AI	GATC	3 cut(s)	20, 159, 236
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	255, 285
SduI	GDGCHC	4 cut(s)	16, 105, 120, 487
SetI	ASST	9 cut(s)	65, 83, 108, 115, 120, 182, 322, 403, 504
SfcI	CTRYAG	1 cut(s)	503
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	51, 441
SsiI	CCGC	2 cut(s)	121, 251
SspMI	CTAG	1 cut(s)	303
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	253, 283
StyI	CCWWGG	2 cut(s)	146, 534
TaiI	ACGT	1 cut(s)	83
TaqI	TCGA	2 cut(s)	65, 229
TasI	AATT	2 cut(s)	51, 441
Tru1I	TTAA	2 cut(s)	435, 541
Tru9I	TTAA	2 cut(s)	435, 541
TscAI	CASTG	2 cut(s)	139, 220
TseI	GCWGC	4 cut(s)	358, 458, 502, 505
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	139, 220
Van91I	CCANNNNNTGG	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	64
XspI	CTAG	1 cut(s)	303
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.