Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010261

Physical Location & Seq

Genomic Coordinates Forward (+)

28972008 .. 28976620

Gene Structure 4613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCTTGTCTTATTGGATGGCCGCTGGCAGAGTCCGTTCAATTTCATGGTTCAGCGGGGAAGCTTCTCTCTTTGCGATTAGGCTGTATGGCGAGCGTTGGCGTCCGAAATGGCAAGGAAGACAACATTGACCTCCAGACCTTCGCTCCCAATAGACAACGAGGGTTAGGGTTTCGCCTTCTTAAAGTTAAGATGGGATTTGGAGCACTAAGGTCCTTGTGCCGACCCCTATCACGAACCCTAATATCTCGCACCCCAACTTGCTCCGTAACGTCATTTGCTGCCAACTCTGTGCACCTGAAACCTGAGCTCCGCTTTGTTTCCGGTGGCCGGGCTCCATGGTTTCTTCCAATTTTGAACCATTTTCACAGCTTGACGGACACTCGTTTCCCAAAACGGCGACCCATGGATAAGCCTCGTCGAAAAAGGTCCAGCATAAGACCTCCTGGACCATATGCTGGGGTTCAGTATGTTCCTGGTGAACCAATAGTGCCTAGCAGACCCAATGAAGGAAGTGTGAAGAGGAGGAATGAGAAGAAGCGCATGAGGCAGCGTCGTGCATTTATTTTGTCAGAGAAAAAGAAGAGGAAAGCTCTGGTGCAGGAGGCCAAAAGAAAGAAAAACATTAAGAGAATTGAGAATAAAATGGCTGCTGTTGCAAGAGACAGAGCGTGGGCTCAGAGACTGGCTGAGCTGCAGCAGTTGGAGGAAGAGAAGAAGAAATCCATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.76

Weight (kDa)

11.45

Isoelectric Point (pI)

69.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51010
fragaria_vesca	FvH4_2g15150 FvH4_2g15150 FvH4_2g15150 FvH4_4g16440
malus_domestica	MD05G1010700.v1.1 MD10G1009400.v1.1
prunus_persica	Prupe.8G013400_v2.0.a1
pyrus_communis	pycom05g00570
rosa_chinensis	RchiOBHm_Chr6g0277811
rosa_laevigata	RLG00000013267
rosa_multiflora	Rmu_sc0002211.1_g000003 Rmu_sc0006114.1_g000001
rosa_roxburghii	Rroxscaffold_7G00190910
rosa_rugosa	Rorug06G0111300.1 Rorug06G0111400
rosa_samantha	Rh6AG222300 Rh6BG225600 Rh6CG228400 Rh6DG219300
rosa_wichuraiana	Rw6G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	458
AciI	CCGC	3 cut(s)	23, 56, 313
AcoI	YGGCCR	2 cut(s)	20, 328
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	3 cut(s)	330, 458, 509
AgsI	TTSAA	2 cut(s)	41, 358
AjnI	CCWGG	2 cut(s)	445, 475
AluBI	AGCT	5 cut(s)	64, 310, 372, 593, 694
AluI	AGCT	5 cut(s)	64, 310, 372, 593, 694
Alw21I	GWGCWC	3 cut(s)	208, 297, 312
Alw26I	GTCTC	2 cut(s)	657, 676
Alw44I	GTGCAC	1 cut(s)	293
AlwNI	CAGNNNCTG	1 cut(s)	685
AoxI	GGCC	3 cut(s)	20, 328, 606
ApaLI	GTGCAC	1 cut(s)	293
ApeKI	GCWGC	5 cut(s)	281, 550, 650, 694, 697
AspLEI	GCGC	1 cut(s)	543
AspS9I	GGNCC	3 cut(s)	213, 429, 449
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	491
AvaII	GGWCC	3 cut(s)	213, 429, 449
BaeGI	GKGCMC	1 cut(s)	297
BanII	GRGCYC	3 cut(s)	312, 337, 679
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	3 cut(s)	208, 297, 312
BbvI	GCAGC	5 cut(s)	268, 562, 637, 681, 709
BccI	CCATC	2 cut(s)	12, 187
BceAI	ACGGC	1 cut(s)	413
BciT130I	CCWGG	2 cut(s)	447, 477
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	657, 676
BfaI	CTAG	1 cut(s)	495
BfmI	CTRYAG	1 cut(s)	695
BisI	GCNGC	6 cut(s)	23, 282, 551, 651, 695, 698
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	6 cut(s)	24, 283, 552, 652, 696, 699
Bme1390I	CCNGG	3 cut(s)	332, 447, 477
Bme18I	GGWCC	3 cut(s)	213, 429, 449
BmgT120I	GGNCC	3 cut(s)	213, 429, 449
BmiI	GGNNCC	1 cut(s)	336
BmrFI	CCNGG	3 cut(s)	332, 447, 477
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	577, 609
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	306
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuMI	CCSGG	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	3 cut(s)	338, 405, 726
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	4 cut(s)	130, 160, 294, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 458, 509
Bse1I	ACTGG	1 cut(s)	690
BseBI	CCWGG	2 cut(s)	447, 477
BseDI	CCNNGG	3 cut(s)	338, 405, 726
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	3 cut(s)	330, 458, 509
BseMII	CTCAG	3 cut(s)	297, 681, 692
BseNI	ACTGG	1 cut(s)	690
BseRI	GAGGAG	1 cut(s)	538
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	5 cut(s)	268, 562, 637, 681, 709
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	3 cut(s)	22, 330, 608
BsiHKAI	GWGCWC	3 cut(s)	208, 297, 312
BsiSI	CCGG	2 cut(s)	324, 331
BslI	CCNNNNNNNGG	3 cut(s)	330, 458, 509
BsmAI	GTCTC	2 cut(s)	657, 676
BsnI	GGCC	3 cut(s)	22, 330, 608
Bsp1286I	GDGCHC	5 cut(s)	208, 297, 312, 337, 679
Bsp1720I	GCTNAGC	1 cut(s)	690
Bsp19I	CCATGG	3 cut(s)	338, 405, 726
BspACI	CCGC	3 cut(s)	23, 56, 313
BspANI	GGCC	3 cut(s)	22, 330, 608
BspCNI	CTCAG	3 cut(s)	298, 682, 691
BspLI	GGNNCC	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	690
BssECI	CCNNGG	3 cut(s)	338, 405, 726
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	3 cut(s)	338, 405, 726
Bst2UI	CCWGG	2 cut(s)	447, 477
Bst6I	CTCTTC	3 cut(s)	515, 578, 705
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	27, 94
BstDEI	CTNAG	4 cut(s)	209, 306, 678, 690
BstDSI	CCRYGG	3 cut(s)	338, 405, 726
BstF5I	GGATG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	543
BstMAI	GTCTC	2 cut(s)	657, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	547, 656
BstNI	CCWGG	2 cut(s)	447, 477
BstSCI	CCNGG	3 cut(s)	330, 445, 475
BstSFI	CTRYAG	1 cut(s)	695
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	5 cut(s)	268, 562, 637, 681, 709
BstV2I	GAAGAC	1 cut(s)	126
BsuRI	GGCC	3 cut(s)	22, 330, 608
BtgI	CCRYGG	3 cut(s)	338, 405, 726
BtsCI	GGATG	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	27, 94
CaiI	CAGNNNCTG	1 cut(s)	685
CfoI	GCGC	1 cut(s)	543
Cfr13I	GGNCC	3 cut(s)	213, 429, 449
CseI	GACGC	2 cut(s)	91, 542
CviAII	CATG	5 cut(s)	47, 339, 406, 544, 727
DdeI	CTNAG	4 cut(s)	209, 306, 678, 690
EaeI	YGGCCR	2 cut(s)	20, 328
Eam1104I	CTCTTC	3 cut(s)	515, 578, 705
EarI	CTCTTC	3 cut(s)	515, 578, 705
Ecl136II	GAGCTC	1 cut(s)	310
Eco130I	CCWWGG	3 cut(s)	338, 405, 726
Eco24I	GRGCYC	3 cut(s)	312, 337, 679
Eco47I	GGWCC	3 cut(s)	213, 429, 449
Eco53kI	GAGCTC	1 cut(s)	310
EcoICRI	GAGCTC	1 cut(s)	310
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	445, 475
EcoT14I	CCWWGG	3 cut(s)	338, 405, 726
EcoT38I	GRGCYC	3 cut(s)	312, 337, 679
ErhI	CCWWGG	3 cut(s)	338, 405, 726
FaeI	CATG	5 cut(s)	50, 342, 409, 547, 730
FatI	CATG	5 cut(s)	46, 338, 405, 543, 726
FauI	CCCGC	1 cut(s)	49
FauNDI	CATATG	1 cut(s)	454
Fnu4HI	GCNGC	6 cut(s)	23, 282, 551, 651, 695, 698
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	3 cut(s)	312, 337, 679
Fsp4HI	GCNGC	6 cut(s)	23, 282, 551, 651, 695, 698
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	1 cut(s)	542
GluI	GCNGC	6 cut(s)	23, 282, 551, 651, 695, 698
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	3 cut(s)	22, 330, 608
HapII	CCGG	2 cut(s)	324, 331
HgaI	GACGC	2 cut(s)	91, 542
HhaI	GCGC	1 cut(s)	543
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	5 cut(s)	50, 342, 409, 547, 730
Hin6I	GCGC	1 cut(s)	541
HinP1I	GCGC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	324, 331
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	295, 482
Hpy188I	TCNGA	3 cut(s)	107, 574, 681
Hpy188III	TCNNGA	2 cut(s)	136, 234
Hpy8I	GTNNAC	2 cut(s)	295, 482
Hpy99I	CGWCG	2 cut(s)	423, 558
HpyAV	CCTTC	3 cut(s)	151, 188, 503
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	5 cut(s)	295, 560, 601, 659, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	547, 656
HpyF3I	CTNAG	4 cut(s)	209, 306, 678, 690
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	50, 342, 409, 547, 730
HspAI	GCGC	1 cut(s)	541
LmnI	GCTCC	5 cut(s)	151, 203, 269, 315, 340
Lsp1109I	GCAGC	5 cut(s)	268, 562, 637, 681, 709
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	268
MboII	GAAGA	8 cut(s)	131, 338, 532, 547, 595, 722, 727, 730
MhlI	GDGCHC	5 cut(s)	208, 297, 312, 337, 679
MluCI	AATT	3 cut(s)	41, 351, 633
MlyI	GAGTC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	684
MseI	TTAA	4 cut(s)	183, 189, 627, 733
MspA1I	CMGCKG	2 cut(s)	25, 56
MspI	CCGG	2 cut(s)	324, 331
MspR9I	CCNGG	3 cut(s)	332, 447, 477
MvaI	CCWGG	2 cut(s)	447, 477
MwoI	GCNNNNNNNGC	2 cut(s)	547, 656
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	3 cut(s)	338, 405, 726
NdeI	CATATG	1 cut(s)	454
NlaIII	CATG	5 cut(s)	50, 342, 409, 547, 730
NlaIV	GGNNCC	1 cut(s)	336
PflMI	CCANNNNNTGG	1 cut(s)	458
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	6 cut(s)	24, 283, 552, 652, 696, 699
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PpuMI	RGGWCCY	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	445, 475
PspFI	CCCAGC	1 cut(s)	458
PspGI	CCWGG	2 cut(s)	445, 475
PspN4I	GGNNCC	1 cut(s)	336
PspPI	GGNCC	3 cut(s)	213, 429, 449
PspPPI	RGGWCCY	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	699
PstNI	CAGNNNCTG	1 cut(s)	685
SacI	GAGCTC	1 cut(s)	312
SaqAI	TTAA	4 cut(s)	183, 189, 627, 733
SatI	GCNGC	6 cut(s)	23, 282, 551, 651, 695, 698
Sau96I	GGNCC	3 cut(s)	213, 429, 449
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	332, 447, 477
SduI	GDGCHC	5 cut(s)	208, 297, 312, 337, 679
SfcI	CTRYAG	1 cut(s)	695
SinI	GGWCC	3 cut(s)	213, 429, 449
Sse9I	AATT	3 cut(s)	41, 351, 633
SsiI	CCGC	3 cut(s)	23, 56, 313
SspMI	CTAG	1 cut(s)	495
SstI	GAGCTC	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	330, 445, 475
StyI	CCWWGG	3 cut(s)	338, 405, 726
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	1 cut(s)	421
TasI	AATT	3 cut(s)	41, 351, 633
TauI	GCSGC	1 cut(s)	25
Tru1I	TTAA	4 cut(s)	183, 189, 627, 733
Tru9I	TTAA	4 cut(s)	183, 189, 627, 733
TseI	GCWGC	5 cut(s)	281, 550, 650, 694, 697
TspDTI	ATGAA	2 cut(s)	35, 522
TspGWI	ACGGA	3 cut(s)	25, 256, 392
Van91I	CCANNNNNTGG	1 cut(s)	458
VneI	GTGCAC	1 cut(s)	293
VpaK11BI	GGWCC	3 cut(s)	213, 429, 449
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.