Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014480

Physical Location & Seq

Genomic Coordinates Forward (+)

19030926 .. 19033134

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGAGATACGATCGAGCAATCACTGTATTCTCCCCCGATGGTCACCTCTTCCAAGTAGAGTATGCCCTAGAAGCCGTCCGAAAGGGTAACGCCGCCGTCGGAGTCCGCGGCACAGATACTGTCGTCCTCGCCGTCGAAAAGAAATCCACCCCTAAGCTCCAGGATTCCAGATCAGCAAGGAAGATAGTGAGCCTTGATAATCACATTGCATTGGCCTGTGCTGGACTGAAAGCAGATGCTCGTGTCTTGATAAACAAGGCGAGGATAGAGTGTCAAAGCCACAGGCTTACGTTGGAGGACCCAGTTACTGTTGAGTACATTACTCGGTACATAGCAGGGCTTCAACAGAAGTATACTCAAAGTGGTGGTGTGAGGCCTTTTGGTCTTTCCACTCTTATTGTTGGGTTTGATCCCTACACTCGTATACCCGCGCTTTATCAGACCGATCCATCTGGTACATTCTCTGCTTGGAAAGCTAATGCAACTGGGAGAAACTCTAACTCAATTAGGGAGTTTCTGGAGAAAAACTACAAAGAAAGCGCTGGCCAAGAAACTGTTAAGCTTGCTATCCGTGCTCTGCTTGAGGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGGTGTTCTGAAGCAACTAGAAGAAGAAGAAATTGATATCATTGTGGCTGAGATCGAAGCAGAGAAGGCTGCAGCTGAAGCAGCCAAGAAAGGCCCTGCGAAGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

250

Amino Acids

27.34

Weight (kDa)

6.86

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	4 - 26	6e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	27 - 210	1.3e-54	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51260 AT3G51260 AT5G66140
fragaria_vesca	FvH4_1g11520
malus_domestica	MD02G1128200.v1.1 MD15G1243400.v1.1
prunus_persica	Prupe.7G170800_v2.0.a1
pyrus_communis	pycom02g10020 pycom15g21440
rosa_chinensis	RchiOBHm_Chr2g0099151
rosa_laevigata	RLG00000016851
rosa_multiflora	Rmu_sc0012098.1_g000001 Rmu_sc0012711.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143400
rosa_rugosa	Rorug02G0077200
rosa_samantha	Rh2AG126200
rosa_wichuraiana	Rw2G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	356, 427
AccII	CGCG	2 cut(s)	111, 434
AciI	CCGC	4 cut(s)	96, 109, 111, 432
AclWI	GGATC	2 cut(s)	407, 443
AcoI	YGGCCR	1 cut(s)	547
AcuI	CTGAAG	2 cut(s)	671, 738
AfaI	GTAC	3 cut(s)	320, 332, 460
AfeI	AGCGCT	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	742
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	4 cut(s)	160, 479, 565, 716
AluI	AGCT	4 cut(s)	160, 479, 565, 716
Alw21I	GWGCWC	1 cut(s)	580
AlwI	GGATC	2 cut(s)	407, 443
AlwNI	CAGNNNCTG	2 cut(s)	122, 311
Aor51HI	AGCGCT	1 cut(s)	544
AoxI	GGCC	4 cut(s)	216, 377, 547, 733
ApeKI	GCWGC	3 cut(s)	710, 713, 722
Asp700I	GAANNNNTTC	1 cut(s)	645
AspLEI	GCGC	2 cut(s)	436, 545
AspS9I	GGNCC	2 cut(s)	301, 734
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	301
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BalI	TGGCCA	1 cut(s)	549
BauI	CACGAG	2 cut(s)	243, 633
Bbv12I	GWGCWC	1 cut(s)	580
BbvI	GCAGC	3 cut(s)	697, 725, 734
BccI	CCATC	2 cut(s)	35, 460
BceAI	ACGGC	3 cut(s)	62, 83, 119
BciT130I	CCWGG	1 cut(s)	164
BfaI	CTAG	2 cut(s)	71, 659
BfmI	CTRYAG	1 cut(s)	711
BfoI	RGCGCY	1 cut(s)	546
BisI	GCNGC	5 cut(s)	96, 112, 711, 714, 723
BlsI	GCNGC	5 cut(s)	97, 113, 712, 715, 724
Bme1390I	CCNGG	1 cut(s)	164
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	301, 734
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	164
BmrI	ACTGGG	2 cut(s)	299, 498
BmsI	GCATC	1 cut(s)	229
BmuI	ACTGGG	2 cut(s)	299, 498
BpmI	CTGGAG	2 cut(s)	146, 542
Bpu10I	CCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	742
Bse1I	ACTGG	2 cut(s)	305, 493
Bse3DI	GCAATG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	742
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	2 cut(s)	305, 493
BseXI	GCAGC	3 cut(s)	697, 725, 734
Bsh1236I	CGCG	2 cut(s)	111, 434
Bsh1285I	CGRYCG	1 cut(s)	16
BshFI	GGCC	4 cut(s)	218, 379, 549, 735
BsiEI	CGRYCG	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	742
BsnI	GGCC	4 cut(s)	218, 379, 549, 735
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp143I	GATC	5 cut(s)	13, 173, 412, 448, 693
BspACI	CCGC	4 cut(s)	96, 109, 111, 432
BspANI	GGCC	4 cut(s)	218, 379, 549, 735
BspCNI	CTCAG	1 cut(s)	682
BspFNI	CGCG	2 cut(s)	111, 434
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	715
BspPI	GGATC	2 cut(s)	407, 443
BsrDI	GCAATG	1 cut(s)	207
BsrI	ACTGG	2 cut(s)	305, 493
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	5 cut(s)	13, 173, 412, 448, 693
BssNAI	GTATAC	2 cut(s)	357, 428
BssSI	CACGAG	2 cut(s)	243, 633
Bst1107I	GTATAC	2 cut(s)	357, 428
Bst2BI	CACGAG	2 cut(s)	243, 633
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	4 cut(s)	28, 124, 313, 559
Bst6I	CTCTTC	1 cut(s)	56
BstC8I	GCNNGC	2 cut(s)	547, 567
BstDEI	CTNAG	2 cut(s)	156, 690
BstDSI	CCRYGG	1 cut(s)	109
BstEII	GGTNACC	1 cut(s)	44
BstFNI	CGCG	2 cut(s)	111, 434
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	2 cut(s)	436, 545
BstKTI	GATC	5 cut(s)	16, 176, 415, 451, 696
BstMBI	GATC	5 cut(s)	13, 173, 412, 448, 693
BstMCI	CGRYCG	1 cut(s)	16
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 476, 575, 707, 719, 722
BstNI	CCWGG	1 cut(s)	164
BstPI	GGTNACC	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	711
BstUI	CGCG	2 cut(s)	111, 434
BstV1I	GCAGC	3 cut(s)	697, 725, 734
BstZ17I	GTATAC	2 cut(s)	357, 428
BsuRI	GGCC	4 cut(s)	218, 379, 549, 735
BtgI	CCRYGG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	547, 567
CaiI	CAGNNNCTG	2 cut(s)	122, 311
CfoI	GCGC	2 cut(s)	436, 545
Cfr13I	GGNCC	2 cut(s)	301, 734
Cfr42I	CCGCGG	1 cut(s)	112
Csp6I	GTAC	3 cut(s)	319, 331, 459
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	1 cut(s)	750
CviQI	GTAC	3 cut(s)	319, 331, 459
DdeI	CTNAG	2 cut(s)	156, 690
DpnI	GATC	5 cut(s)	15, 175, 414, 450, 695
DpnII	GATC	5 cut(s)	13, 173, 412, 448, 693
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco147I	AGGCCT	1 cut(s)	379
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	301
Eco47III	AGCGCT	1 cut(s)	544
Eco57I	CTGAAG	2 cut(s)	671, 738
Eco91I	GGTNACC	1 cut(s)	44
EcoO109I	RGGNCCY	2 cut(s)	301, 734
EcoO65I	GGTNACC	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	679
FaeI	CATG	1 cut(s)	753
FaiI	YATR	5 cut(s)	66, 335, 357, 428, 751
FatI	CATG	1 cut(s)	749
FauI	CCCGC	1 cut(s)	439
FblI	GTMKAC	2 cut(s)	356, 427
Fnu4HI	GCNGC	5 cut(s)	96, 112, 711, 714, 723
Fsp4HI	GCNGC	5 cut(s)	96, 112, 711, 714, 723
FspBI	CTAG	2 cut(s)	71, 659
GlaI	GCGC	2 cut(s)	435, 544
GluI	GCNGC	5 cut(s)	96, 112, 711, 714, 723
GsuI	CTGGAG	2 cut(s)	146, 542
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	4 cut(s)	218, 379, 549, 735
HhaI	GCGC	2 cut(s)	436, 545
Hin1II	CATG	1 cut(s)	753
Hin6I	GCGC	2 cut(s)	434, 543
HinP1I	GCGC	2 cut(s)	434, 543
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	105, 167
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	357, 428
Hpy188I	TCNGA	4 cut(s)	83, 104, 444, 651
Hpy188III	TCNNGA	3 cut(s)	171, 250, 521
Hpy8I	GTNNAC	2 cut(s)	357, 428
Hpy99I	CGWCG	2 cut(s)	104, 140
HpyAV	CCTTC	3 cut(s)	635, 700, 736
HpyCH4III	ACNGT	4 cut(s)	28, 124, 313, 559
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	3 cut(s)	212, 485, 713
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 476, 575, 707, 719, 722
HpyF3I	CTNAG	2 cut(s)	156, 690
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	753
HspAI	GCGC	2 cut(s)	434, 543
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	13, 173, 412, 448, 693
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	3 cut(s)	697, 725, 734
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	71, 659
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	3 cut(s)	44, 89, 307
MalI	GATC	5 cut(s)	15, 175, 414, 450, 695
MboI	GATC	5 cut(s)	13, 173, 412, 448, 693
MboII	GAAGA	5 cut(s)	43, 196, 674, 677, 680
MhlI	GDGCHC	1 cut(s)	580
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	2 cut(s)	507, 672
MluNI	TGGCCA	1 cut(s)	549
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	2 cut(s)	82, 276
MnlI	CCTC	8 cut(s)	59, 140, 258, 292, 369, 580, 610, 631
Mox20I	TGGCCA	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	549
MspA1I	CMGCKG	2 cut(s)	111, 716
MspR9I	CCNGG	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	2 cut(s)	111, 434
MwoI	GCNNNNNNNGC	6 cut(s)	74, 476, 575, 707, 719, 722
NdeII	GATC	5 cut(s)	13, 173, 412, 448, 693
NlaIII	CATG	1 cut(s)	753
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	44
PceI	AGGCCT	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	5 cut(s)	97, 113, 712, 715, 724
Ple19I	CGATCG	1 cut(s)	16
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	301
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	162
PspEI	GGTNACC	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	301, 734
PspPPI	RGGWCCY	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	715
PstNI	CAGNNNCTG	2 cut(s)	122, 311
PvuI	CGATCG	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	320, 332, 460
RsaNI	GTAC	3 cut(s)	319, 331, 459
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	5 cut(s)	96, 112, 711, 714, 723
Sau3AI	GATC	5 cut(s)	13, 173, 412, 448, 693
Sau96I	GGNCC	2 cut(s)	301, 734
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	580
SetI	ASST	9 cut(s)	51, 162, 296, 481, 567, 591, 621, 646, 718
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	711
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	507, 672
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	4 cut(s)	96, 109, 111, 432
SspMI	CTAG	2 cut(s)	71, 659
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	4 cut(s)	28, 124, 313, 559
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	3 cut(s)	16, 138, 696
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	2 cut(s)	507, 672
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	2 cut(s)	98, 114
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	3 cut(s)	710, 713, 722
Tsp45I	GTSAC	1 cut(s)	44
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	301
XmiI	GTMKAC	2 cut(s)	356, 427
XmnI	GAANNNNTTC	1 cut(s)	645
XspI	CTAG	2 cut(s)	71, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.