Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014480

Physical Location & Seq

Genomic Coordinates Reverse (-)

19987025 .. 19989649

Gene Structure 2625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1243400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGAGGTACGACAGAGCCATTACCGTGTTCTCTCCAGACGGTCATCTCTTCCAAGTCGAGTACGCCCTCGAGGCCGTCCGTAAGGGTAACGCCGCCGTCGGCGTCCGCGGCACCGACACCATCGTTCTCGGCGTCGAGAAGAAGTCCACCGCCAAGCTCCAGGACTCCAGATCAGTGAGGAAGATTGTGAACCTGGATAATCACATTGCTCTAGCCTGCGCTGGTCTCAAAGCAGATGCTCGTGTGTTGATAAACAAGGCACGGATTGAATGTCAAAGCCACAGGCTTACTGTCGAGGATCCAGTGACCGTTGAGTACATAACGCGTTACATTGCTGGTCTTCAGCAAAAGTACACACAAAGTGGTGGTGTGAGACCATTTGGTCTTTCAACTTTGATTGTCGGATTTGATCCGTACACAGATTCACCATCACTATATCAGACAGATCCTTCTGGGACTTTTTCAGCATGGAAAGCAAATGCAACTGGAAGAAACTCCAATTCGATAAGGGAGTTTCTGGAGAAGAACTACAAAGAAACTTCTGGGCAAGAAACTGTAAAGCTTGCAATCCGGGCTTTGCTTGAGGTTGTCGAGAGTGGAGGAAAAAACATAGAAGTTGCTGTGATGACAAAGGATCATGGTCTGAAGCAACTTGAAGAAGCTGAAATTGATGCCATTGTTGCTGACATAGAAGCAGAGAAAGCAGCTGCTGAGGCCGCTAAGAAGGGACCACCCAGGGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

250

Amino Acids

27.14

Weight (kDa)

6.92

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	4 - 26	6e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	27 - 210	8.6e-56	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51260 AT3G51260 AT5G66140
fragaria_vesca	FvH4_1g11520
malus_domestica	MD02G1128200.v1.1 MD15G1243400.v1.1
prunus_persica	Prupe.7G170800_v2.0.a1
pyrus_communis	pycom02g10020 pycom15g21440
rosa_chinensis	RchiOBHm_Chr2g0099151
rosa_laevigata	RLG00000016851
rosa_multiflora	Rmu_sc0012098.1_g000001 Rmu_sc0012711.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143400
rosa_rugosa	Rorug02G0077200
rosa_samantha	Rh2AG126200
rosa_wichuraiana	Rw2G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	384
AbsI	CCTCGAGG	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	2 cut(s)	111, 328
AciI	CCGC	5 cut(s)	96, 109, 111, 153, 720
AclWI	GGATC	5 cut(s)	296, 309, 407, 443, 645
AcuI	CTGAAG	2 cut(s)	329, 668
AcyI	GRCGYC	2 cut(s)	105, 135
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	5 cut(s)	11, 65, 320, 356, 419
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	272, 393, 659
AjnI	CCWGG	3 cut(s)	162, 195, 737
AluBI	AGCT	4 cut(s)	160, 565, 665, 710
AluI	AGCT	4 cut(s)	160, 565, 665, 710
Alw26I	GTCTC	3 cut(s)	233, 370, 737
AlwI	GGATC	5 cut(s)	296, 309, 407, 443, 645
AlwNI	CAGNNNCTG	1 cut(s)	713
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	75, 717
ApeKI	GCWGC	2 cut(s)	707, 710
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	420
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	731
BamHI	GGATCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	113
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	697, 719
BccI	CCATC	2 cut(s)	131, 439
BceAI	ACGGC	2 cut(s)	62, 83
BciT130I	CCWGG	3 cut(s)	164, 197, 739
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	3 cut(s)	233, 370, 737
BfaI	CTAG	1 cut(s)	215
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	5 cut(s)	96, 112, 708, 711, 720
BlsI	GCNGC	5 cut(s)	97, 113, 709, 712, 721
Bme1390I	CCNGG	4 cut(s)	164, 197, 575, 739
Bme18I	GGWCC	1 cut(s)	731
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	3 cut(s)	115, 303, 732
BmrFI	CCNGG	4 cut(s)	164, 197, 575, 739
BmsI	GCATC	2 cut(s)	229, 664
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	4 cut(s)	21, 146, 154, 542
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	575
BsaHI	GRCGYC	2 cut(s)	105, 135
BsaI	GGTCTC	2 cut(s)	233, 370
BsaJI	CCNNGG	3 cut(s)	109, 737, 738
Bse1I	ACTGG	2 cut(s)	305, 493
Bse3DI	GCAATG	2 cut(s)	207, 333
BseBI	CCWGG	3 cut(s)	164, 197, 739
BseDI	CCNNGG	3 cut(s)	109, 737, 738
BseMI	GCAATG	2 cut(s)	207, 333
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	2 cut(s)	305, 493
BseXI	GCAGC	2 cut(s)	697, 719
Bsh1236I	CGCG	2 cut(s)	111, 328
BshFI	GGCC	2 cut(s)	77, 719
BshNI	GGYRCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	574
BslFI	GGGAC	2 cut(s)	472, 744
BsmAI	GTCTC	3 cut(s)	233, 370, 737
BsmFI	GGGAC	2 cut(s)	472, 744
BsnI	GGCC	2 cut(s)	77, 719
Bso31I	GGTCTC	2 cut(s)	233, 370
BsoBI	CYCGRG	1 cut(s)	71
Bsp143I	GATC	5 cut(s)	173, 301, 412, 448, 637
BspACI	CCGC	5 cut(s)	96, 109, 111, 153, 720
BspANI	GGCC	2 cut(s)	77, 719
BspCNI	CTCAG	1 cut(s)	706
BspFNI	CGCG	2 cut(s)	111, 328
BspLI	GGNNCC	3 cut(s)	115, 303, 732
BspPI	GGATC	5 cut(s)	296, 309, 407, 443, 645
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	2 cut(s)	233, 370
BsrDI	GCAATG	2 cut(s)	207, 333
BsrI	ACTGG	2 cut(s)	305, 493
BssECI	CCNNGG	3 cut(s)	109, 737, 738
BssMI	GATC	5 cut(s)	173, 301, 412, 448, 637
BssNI	GRCGYC	2 cut(s)	105, 135
BssSI	CACGAG	1 cut(s)	243
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	164, 197, 739
Bst4CI	ACNGT	5 cut(s)	28, 44, 295, 313, 559
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	105, 135
BstC8I	GCNNGC	2 cut(s)	220, 567
BstDEI	CTNAG	2 cut(s)	714, 723
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	2 cut(s)	111, 328
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	5 cut(s)	176, 304, 415, 451, 640
BstMAI	GTCTC	3 cut(s)	233, 370, 737
BstMBI	GATC	5 cut(s)	173, 301, 412, 448, 637
BstMWI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
BstNI	CCWGG	3 cut(s)	164, 197, 739
BstSCI	CCNGG	4 cut(s)	162, 195, 573, 737
BstUI	CGCG	2 cut(s)	111, 328
BstV1I	GCAGC	2 cut(s)	697, 719
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	301, 448
BstYI	RGATCY	2 cut(s)	301, 448
BsuRI	GGCC	2 cut(s)	77, 719
BtgI	CCRYGG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	183, 312
Cac8I	GCNNGC	2 cut(s)	220, 567
CaiI	CAGNNNCTG	1 cut(s)	713
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	731
Cfr42I	CCGCGG	1 cut(s)	112
CseI	GACGC	2 cut(s)	94, 124
Csp6I	GTAC	5 cut(s)	10, 64, 319, 355, 418
CviAII	CATG	3 cut(s)	471, 641, 747
CviQI	GTAC	5 cut(s)	10, 64, 319, 355, 418
DdeI	CTNAG	2 cut(s)	714, 723
DpnI	GATC	5 cut(s)	175, 303, 414, 450, 639
DpnII	GATC	5 cut(s)	173, 301, 412, 448, 637
DraIII	CACNNNGTG	1 cut(s)	365
DrdI	GACNNNNNNGTC	1 cut(s)	384
DseDI	GACNNNNNNGTC	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco31I	GGTCTC	2 cut(s)	233, 370
Eco47I	GGWCC	1 cut(s)	731
Eco57I	CTGAAG	2 cut(s)	329, 668
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	3 cut(s)	162, 195, 737
FaeI	CATG	3 cut(s)	474, 644, 750
FaiI	YATR	7 cut(s)	323, 439, 472, 614, 642, 692, 748
FaqI	GGGAC	2 cut(s)	472, 744
FatI	CATG	3 cut(s)	470, 640, 746
Fnu4HI	GCNGC	5 cut(s)	96, 112, 708, 711, 720
Fsp4HI	GCNGC	5 cut(s)	96, 112, 708, 711, 720
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	5 cut(s)	96, 112, 708, 711, 720
GsuI	CTGGAG	4 cut(s)	21, 146, 154, 542
HaeIII	GGCC	2 cut(s)	77, 719
HapII	CCGG	1 cut(s)	574
HgaI	GACGC	2 cut(s)	94, 124
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	2 cut(s)	105, 135
Hin1II	CATG	3 cut(s)	474, 644, 750
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	167, 425
HpaII	CCGG	1 cut(s)	574
HphI	GGTGA	1 cut(s)	420
Hpy166II	GTNNAC	4 cut(s)	150, 193, 357, 420
Hpy188I	TCNGA	3 cut(s)	407, 444, 648
Hpy188III	TCNNGA	5 cut(s)	38, 139, 171, 521, 595
Hpy8I	GTNNAC	4 cut(s)	150, 193, 357, 420
Hpy99I	CGWCG	2 cut(s)	104, 140
HpyAV	CCTTC	2 cut(s)	462, 721
HpyCH4III	ACNGT	5 cut(s)	28, 44, 295, 313, 559
HpyCH4V	TGCA	2 cut(s)	485, 569
HpyF10VI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
HpyF3I	CTNAG	2 cut(s)	714, 723
Hsp92I	GRCGYC	2 cut(s)	105, 135
Hsp92II	CATG	3 cut(s)	474, 644, 750
HspAI	GCGC	1 cut(s)	222
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	173, 301, 412, 448, 637
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	2 cut(s)	697, 719
LweI	GCATC	2 cut(s)	229, 664
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	3 cut(s)	89, 307, 329
MalI	GATC	5 cut(s)	175, 303, 414, 450, 639
MboI	GATC	5 cut(s)	173, 301, 412, 448, 637
MboII	GAAGA	7 cut(s)	43, 154, 196, 335, 504, 538, 671
MflI	RGATCY	2 cut(s)	301, 448
MluCI	AATT	2 cut(s)	502, 669
MluI	ACGCGT	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	7 cut(s)	67, 80, 174, 292, 580, 596, 709
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	2 cut(s)	111, 710
MspI	CCGG	1 cut(s)	574
MspR9I	CCNGG	4 cut(s)	164, 197, 575, 739
MvaI	CCWGG	3 cut(s)	164, 197, 739
MvnI	CGCG	2 cut(s)	111, 328
MwoI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	5 cut(s)	173, 301, 412, 448, 637
NlaIII	CATG	3 cut(s)	474, 644, 750
NlaIV	GGNNCC	3 cut(s)	115, 303, 732
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	71
PasI	CCCWGGG	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	425
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	5 cut(s)	97, 113, 709, 712, 721
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	3 cut(s)	162, 195, 737
PspGI	CCWGG	3 cut(s)	162, 195, 737
PspN4I	GGNNCC	3 cut(s)	115, 303, 732
PspPI	GGNCC	1 cut(s)	731
PspXI	VCTCGAGB	1 cut(s)	71
PstNI	CAGNNNCTG	1 cut(s)	713
PsuI	RGATCY	2 cut(s)	301, 448
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	5 cut(s)	11, 65, 320, 356, 419
RsaNI	GTAC	5 cut(s)	10, 64, 319, 355, 418
RseI	CAYNNNNRTG	1 cut(s)	26
SacII	CCGCGG	1 cut(s)	112
SatI	GCNGC	5 cut(s)	96, 112, 708, 711, 720
Sau3AI	GATC	5 cut(s)	173, 301, 412, 448, 637
Sau96I	GGNCC	1 cut(s)	731
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	4 cut(s)	164, 197, 575, 739
SetI	ASST	7 cut(s)	11, 162, 198, 567, 591, 667, 712
SfaNI	GCATC	2 cut(s)	229, 664
Sfr274I	CTCGAG	1 cut(s)	71
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	1 cut(s)	731
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	71, 584
SmoI	CTYRAG	2 cut(s)	71, 584
Sse9I	AATT	2 cut(s)	502, 669
SsiI	CCGC	5 cut(s)	96, 109, 111, 153, 720
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	4 cut(s)	162, 195, 573, 737
TaaI	ACNGT	5 cut(s)	28, 44, 295, 313, 559
TaqI	TCGA	6 cut(s)	60, 72, 138, 297, 506, 594
TasI	AATT	2 cut(s)	502, 669
TatI	WGTACW	2 cut(s)	318, 354
TauI	GCSGC	3 cut(s)	98, 114, 722
TfiI	GAWTC	1 cut(s)	425
TscAI	CASTG	2 cut(s)	183, 312
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	707, 710
Tsp45I	GTSAC	1 cut(s)	307
TspGWI	ACGGA	3 cut(s)	71, 280, 405
TspRI	CASTG	2 cut(s)	183, 312
VpaK11BI	GGWCC	1 cut(s)	731
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.