Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014480

Physical Location & Seq

Genomic Coordinates Forward (+)

17271120 .. 17273147

Gene Structure 2028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGAGGTACGACAGAGCCATAACGGTGTTTTCTCCTGATGGCCATCTCTTCCAAGTCGAATACGCGCTCGAAGCTGTGCGCAAGGGTAACGCCGCCGTCGGCGTACGTGGCACCGACACCATCGTTCTCGGAGTCGAAAAGAAGTCCACTGCCAAGCTCCAGGACTCCAGATCAGTGAGGAAGATCGTGAACCTGGATAATCACATTGCTCTAGCCTGTGCTGGGCTCAAAGCAGATGCTCGTGTTTTGATAAACAAGGCTAGGATTGAATGTCAAAGCCACAGGCTTACTGTTGAGGATCCAGTAACAGTTGAGTATATAACGCGTTACATTGCTGGTCTTCAGCAAAAGTACACACAAAGTGGTGGTGTGAGACCATTTGGTCTTTCAACTTTGATTGTTGGGTTTGATCCATACACGGGTTCACCATCACTATACCAGACAGATCCTTCTGGGACTTTTTCAGCATGGAAAGCTAATGCAACTGGAAGAAACTCCAATTCGATAAGGGAATTTCTGGAGAAGAACTTCAAAGAAACTTCTGGGCAAGAAACCATAAAGCTTGCAATCCGTGCTTTGCTTGAGGTTGTTGAAAGTGGGGGAAAAAACATAGAAGTGGCTGTGATGACTAAGGATCATGGTCTGCGGCAACTTGAAGAAGCTGAAATTGATGCTATTGTTGCTGAGATAGAAGCAGAGAAAGCGGCTGCTGAGGCGGCAAAGAAGGGCCCTCCTAGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

250

Amino Acids

27.12

Weight (kDa)

7.74

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51260 AT3G51260 AT5G66140
fragaria_vesca	FvH4_1g11520
malus_domestica	MD02G1128200.v1.1 MD15G1243400.v1.1
prunus_persica	Prupe.7G170800_v2.0.a1
pyrus_communis	pycom02g10020 pycom15g21440
rosa_chinensis	RchiOBHm_Chr2g0099151
rosa_laevigata	RLG00000016851
rosa_multiflora	Rmu_sc0012098.1_g000001 Rmu_sc0012711.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143400
rosa_rugosa	Rorug02G0077200
rosa_samantha	Rh2AG126200
rosa_wichuraiana	Rw2G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	384
Acc16I	TGCGCA	1 cut(s)	83
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	2 cut(s)	68, 328
AciI	CCGC	4 cut(s)	96, 649, 707, 719
AclWI	GGATC	5 cut(s)	296, 309, 407, 443, 645
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	515
AcuI	CTGAAG	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	3 cut(s)	11, 108, 356
AfiI	CCNNNNNNNGG	3 cut(s)	225, 422, 739
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	5 cut(s)	272, 393, 535, 596, 659
AjnI	CCWGG	2 cut(s)	162, 195
AluBI	AGCT	5 cut(s)	77, 160, 479, 565, 665
AluI	AGCT	5 cut(s)	77, 160, 479, 565, 665
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	5 cut(s)	296, 309, 407, 443, 645
AoxI	GGCC	2 cut(s)	43, 730
ApaI	GGGCCC	1 cut(s)	734
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	1 cut(s)	515
Asp700I	GAANNNNTTC	1 cut(s)	530
AspA2I	CCTAGG	1 cut(s)	737
AspLEI	GCGC	2 cut(s)	70, 84
AspS9I	GGNCC	2 cut(s)	730, 731
AsuHPI	GGTGA	1 cut(s)	420
AvrII	CCTAGG	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	45
BamHI	GGATCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	231, 734
BauI	CACGAG	1 cut(s)	243
BbsI	GAAGAC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	4 cut(s)	35, 54, 131, 439
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	2 cut(s)	164, 197
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	3 cut(s)	215, 264, 738
BisI	GCNGC	5 cut(s)	96, 650, 708, 711, 720
BlnI	CCTAGG	1 cut(s)	737
BlsI	GCNGC	5 cut(s)	97, 651, 709, 712, 721
Bme1390I	CCNGG	2 cut(s)	164, 197
BmgT120I	GGNCC	2 cut(s)	730, 731
BmiI	GGNNCC	3 cut(s)	115, 303, 732
BmrFI	CCNGG	2 cut(s)	164, 197
BmsI	GCATC	2 cut(s)	229, 664
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	3 cut(s)	146, 154, 542
Bpu10I	CCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	110
BsaBI	GATNNNNATC	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	370
BsaJI	CCNNGG	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 422, 739
Bse1I	ACTGG	2 cut(s)	305, 493
Bse3DI	GCAATG	2 cut(s)	207, 333
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	164, 197
BseDI	CCNNGG	1 cut(s)	737
BseJI	GATNNNNATC	1 cut(s)	45
BseLI	CCNNNNNNNGG	3 cut(s)	225, 422, 739
BseMI	GCAATG	2 cut(s)	207, 333
BseMII	CTCAG	2 cut(s)	678, 705
BseNI	ACTGG	2 cut(s)	305, 493
BseSI	GKGCMC	1 cut(s)	734
BseXI	GCAGC	1 cut(s)	697
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	2 cut(s)	68, 328
BshFI	GGCC	2 cut(s)	45, 732
BshNI	GGYRCC	1 cut(s)	113
BsiWI	CGTACG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	3 cut(s)	225, 422, 739
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	2 cut(s)	45, 732
Bso31I	GGTCTC	1 cut(s)	370
Bsp120I	GGGCCC	1 cut(s)	730
Bsp1286I	GDGCHC	2 cut(s)	231, 734
Bsp143I	GATC	6 cut(s)	173, 186, 301, 412, 448, 637
BspACI	CCGC	4 cut(s)	96, 649, 707, 719
BspANI	GGCC	2 cut(s)	45, 732
BspCNI	CTCAG	2 cut(s)	679, 706
BspFNI	CGCG	2 cut(s)	68, 328
BspLI	GGNNCC	3 cut(s)	115, 303, 732
BspPI	GGATC	5 cut(s)	296, 309, 407, 443, 645
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	370
BsrDI	GCAATG	2 cut(s)	207, 333
BsrI	ACTGG	2 cut(s)	305, 493
BssECI	CCNNGG	1 cut(s)	737
BssMI	GATC	6 cut(s)	173, 186, 301, 412, 448, 637
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	737
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	164, 197
Bst4CI	ACNGT	3 cut(s)	28, 295, 313
Bst6I	CTCTTC	1 cut(s)	56
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	3 cut(s)	633, 687, 714
BstFNI	CGCG	2 cut(s)	68, 328
BstHHI	GCGC	2 cut(s)	70, 84
BstKTI	GATC	6 cut(s)	176, 189, 304, 415, 451, 640
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	6 cut(s)	173, 186, 301, 412, 448, 637
BstMWI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
BstNI	CCWGG	2 cut(s)	164, 197
BstSCI	CCNGG	2 cut(s)	162, 195
BstSLI	GKGCMC	1 cut(s)	734
BstUI	CGCG	2 cut(s)	68, 328
BstV1I	GCAGC	1 cut(s)	697
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	2 cut(s)	301, 448
BstYI	RGATCY	2 cut(s)	301, 448
BsuRI	GGCC	2 cut(s)	45, 732
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 183
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	2 cut(s)	70, 84
Cfr13I	GGNCC	2 cut(s)	730, 731
Csp6I	GTAC	3 cut(s)	10, 107, 355
CviAII	CATG	3 cut(s)	471, 641, 747
CviQI	GTAC	3 cut(s)	10, 107, 355
DdeI	CTNAG	3 cut(s)	633, 687, 714
DpnI	GATC	6 cut(s)	175, 188, 303, 414, 450, 639
DpnII	GATC	6 cut(s)	173, 186, 301, 412, 448, 637
DraIII	CACNNNGTG	1 cut(s)	365
DrdI	GACNNNNNNGTC	1 cut(s)	384
DseDI	GACNNNNNNGTC	1 cut(s)	384
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	737
Eco24I	GRGCYC	2 cut(s)	231, 734
Eco31I	GGTCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	730, 731
EcoRII	CCWGG	2 cut(s)	162, 195
EcoT14I	CCWWGG	1 cut(s)	737
EcoT38I	GRGCYC	2 cut(s)	231, 734
ErhI	CCWWGG	1 cut(s)	737
FaeI	CATG	3 cut(s)	474, 644, 750
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	3 cut(s)	470, 640, 746
Fnu4HI	GCNGC	5 cut(s)	96, 650, 708, 711, 720
FriOI	GRGCYC	2 cut(s)	231, 734
Fsp4HI	GCNGC	5 cut(s)	96, 650, 708, 711, 720
FspBI	CTAG	3 cut(s)	215, 264, 738
FspI	TGCGCA	1 cut(s)	83
GlaI	GCGC	2 cut(s)	69, 83
GluI	GCNGC	5 cut(s)	96, 650, 708, 711, 720
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	3 cut(s)	146, 154, 542
HaeIII	GGCC	2 cut(s)	45, 732
HhaI	GCGC	2 cut(s)	70, 84
Hin1II	CATG	3 cut(s)	474, 644, 750
Hin6I	GCGC	2 cut(s)	68, 82
HinP1I	GCGC	2 cut(s)	68, 82
HindIII	AAGCTT	1 cut(s)	563
HinfI	GANTC	2 cut(s)	135, 167
HphI	GGTGA	1 cut(s)	420
Hpy166II	GTNNAC	4 cut(s)	150, 193, 357, 428
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	4 cut(s)	38, 171, 190, 521
Hpy8I	GTNNAC	4 cut(s)	150, 193, 357, 428
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	462, 721
HpyCH4III	ACNGT	3 cut(s)	28, 295, 313
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	485, 569
HpyF10VI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
HpyF3I	CTNAG	3 cut(s)	633, 687, 714
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	474, 644, 750
HspAI	GCGC	2 cut(s)	68, 82
Kzo9I	GATC	6 cut(s)	173, 186, 301, 412, 448, 637
LmnI	GCTCC	1 cut(s)	165
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	2 cut(s)	229, 664
MaeI	CTAG	3 cut(s)	215, 264, 738
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	89, 307, 329
MalI	GATC	6 cut(s)	175, 188, 303, 414, 450, 639
MboI	GATC	6 cut(s)	173, 186, 301, 412, 448, 637
MboII	GAAGA	6 cut(s)	43, 196, 335, 504, 538, 671
MflI	RGATCY	2 cut(s)	301, 448
MhlI	GDGCHC	2 cut(s)	231, 734
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	3 cut(s)	502, 515, 669
MluI	ACGCGT	1 cut(s)	326
MluNI	TGGCCA	1 cut(s)	45
MlyI	GAGTC	2 cut(s)	144, 161
MnlI	CCTC	5 cut(s)	174, 292, 580, 709, 744
Mox20I	TGGCCA	1 cut(s)	45
MroXI	GAANNNNTTC	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	45
MslI	CAYNNNNRTG	2 cut(s)	26, 617
Msp20I	TGGCCA	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	164, 197
MvaI	CCWGG	2 cut(s)	164, 197
MvnI	CGCG	2 cut(s)	68, 328
MwoI	GCNNNNNNNGC	8 cut(s)	74, 111, 476, 575, 683, 704, 716, 719
NdeII	GATC	6 cut(s)	173, 186, 301, 412, 448, 637
NlaIII	CATG	3 cut(s)	474, 644, 750
NlaIV	GGNNCC	3 cut(s)	115, 303, 732
NsbI	TGCGCA	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	530
Pfl23II	CGTACG	1 cut(s)	106
PfoI	TCCNGGA	1 cut(s)	162
PkrI	GCNGC	5 cut(s)	97, 651, 709, 712, 721
PleI	GAGTC	2 cut(s)	143, 161
PpsI	GAGTC	2 cut(s)	143, 161
Ppu21I	YACGTR	1 cut(s)	110
Psp6I	CCWGG	2 cut(s)	162, 195
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	162, 195
PspLI	CGTACG	1 cut(s)	106
PspN4I	GGNNCC	3 cut(s)	115, 303, 732
PspOMI	GGGCCC	1 cut(s)	730
PspPI	GGNCC	2 cut(s)	730, 731
PsuI	RGATCY	2 cut(s)	301, 448
RsaI	GTAC	3 cut(s)	11, 108, 356
RsaNI	GTAC	3 cut(s)	10, 107, 355
RseI	CAYNNNNRTG	2 cut(s)	26, 617
SatI	GCNGC	5 cut(s)	96, 650, 708, 711, 720
Sau3AI	GATC	6 cut(s)	173, 186, 301, 412, 448, 637
Sau96I	GGNCC	2 cut(s)	730, 731
SchI	GAGTC	2 cut(s)	144, 161
ScrFI	CCNGG	2 cut(s)	164, 197
SduI	GDGCHC	2 cut(s)	231, 734
SetI	ASST	9 cut(s)	11, 79, 112, 162, 198, 481, 567, 591, 667
SfaNI	GCATC	2 cut(s)	229, 664
SmiMI	CAYNNNNRTG	2 cut(s)	26, 617
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	3 cut(s)	502, 515, 669
SsiI	CCGC	4 cut(s)	96, 649, 707, 719
SspMI	CTAG	3 cut(s)	215, 264, 738
StyD4I	CCNGG	2 cut(s)	162, 195
StyI	CCWWGG	1 cut(s)	737
TaaI	ACNGT	3 cut(s)	28, 295, 313
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	60, 72, 138, 506
TasI	AATT	3 cut(s)	502, 515, 669
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	4 cut(s)	98, 652, 710, 722
TscAI	CASTG	2 cut(s)	157, 183
TseI	GCWGC	1 cut(s)	710
TspGWI	ACGGA	1 cut(s)	563
TspRI	CASTG	2 cut(s)	157, 183
XapI	RAATTY	1 cut(s)	515
XmaJI	CCTAGG	1 cut(s)	737
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	3 cut(s)	215, 264, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.