Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014480

Physical Location & Seq

Genomic Coordinates Reverse (-)

11463692 .. 11466321

Gene Structure 2630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG126200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAAAACACGACTTGAGTTAAGATTGAGTTGTGTCATATCGGTGAGGAAGATTGTGAACCTGGACAATCACATTGCTCTAGCCTGTGCTGGGCTCAAAGCAGATGCTCGTGTCCTGATAAACAAGGCGAGGATTGAATGTCAAAGCCATAGGCTTACTGTTGAGGATCCAGTAACAGTTGAGTATATAACGCGTTACATTGCTGGTCTTCAGCAAAAATACACGCAGAGTGGTGGTGTGAGGCCATTTGGTCTTTCAACTTTGATTGTTGGGTTTGATCCATACACGAATAAACCAGCACTCTATCAGACAGATCCTTCAGGGACTTTTTCAGCATGGAAAGCGAATGCAACGGGAAGGAACTCCAATTCGATAAGGGAATTTCTGGAGAAAAACTACAAAGAAACTTCTGGGCAAGACACCATAAAGCTTGCGATCCGTGCTTTGCTTGAGGTTGTTGAAAGTGGAGGGAAGAACATAGAAGTTGCTGTCATGACAAAGGATCATGGTCTGCGACAACTTGAAGAAGCTGAAATCGATGCTATTGTTGCTGACATCGAAGCAGAGAAAGCAGCTGCTGAGGCTGCAAAGAAAGGACCTGCCAGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

204

Amino Acids

22.39

Weight (kDa)

8.37

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	14 - 165	2.7e-45	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51260 AT3G51260 AT5G66140
fragaria_vesca	FvH4_1g11520
malus_domestica	MD02G1128200.v1.1 MD15G1243400.v1.1
prunus_persica	Prupe.7G170800_v2.0.a1
pyrus_communis	pycom02g10020 pycom15g21440
rosa_chinensis	RchiOBHm_Chr2g0099151
rosa_laevigata	RLG00000016851
rosa_multiflora	Rmu_sc0012098.1_g000001 Rmu_sc0012711.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143400
rosa_rugosa	Rorug02G0077200
rosa_samantha	Rh2AG126200
rosa_wichuraiana	Rw2G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	607
AccII	CGCG	1 cut(s)	193
AclWI	GGATC	6 cut(s)	161, 174, 272, 308, 430, 510
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	194, 303
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	4 cut(s)	137, 258, 461, 524
AjnI	CCWGG	2 cut(s)	60, 602
AluBI	AGCT	3 cut(s)	430, 530, 575
AluI	AGCT	3 cut(s)	430, 530, 575
AlwI	GGATC	6 cut(s)	161, 174, 272, 308, 430, 510
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	3 cut(s)	572, 575, 584
ApoI	RAATTY	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	596
BamHI	GGATCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	562, 571, 584
BciT130I	CCWGG	2 cut(s)	62, 604
BfaI	CTAG	1 cut(s)	80
BfuAI	ACCTGC	1 cut(s)	607
BisI	GCNGC	3 cut(s)	573, 576, 585
BlsI	GCNGC	3 cut(s)	574, 577, 586
Bme1390I	CCNGG	2 cut(s)	62, 604
Bme18I	GGWCC	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	62, 604
BmsI	GCATC	2 cut(s)	94, 529
BpiI	GAAGAC	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	579
BpuEI	CTTGAG	2 cut(s)	35, 470
Bsa29I	ATCGAT	1 cut(s)	537
BsaJI	CCNNGG	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	170
Bse3DI	GCAATG	2 cut(s)	72, 198
BseBI	CCWGG	2 cut(s)	62, 604
BseCI	ATCGAT	1 cut(s)	537
BseDI	CCNNGG	1 cut(s)	603
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMI	GCAATG	2 cut(s)	72, 198
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	3 cut(s)	562, 571, 584
BseYI	CCCAGC	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	244
BshVI	ATCGAT	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	5 cut(s)	166, 277, 313, 435, 502
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	1 cut(s)	571
BspDI	ATCGAT	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	607
BspPI	GGATC	6 cut(s)	161, 174, 272, 308, 430, 510
BsrDI	GCAATG	2 cut(s)	72, 198
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	603
BssMI	GATC	5 cut(s)	166, 277, 313, 435, 502
BssSI	CACGAG	1 cut(s)	108
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	62, 604
Bst4CI	ACNGT	2 cut(s)	160, 178
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	579
BstFNI	CGCG	1 cut(s)	193
BstKTI	GATC	5 cut(s)	169, 280, 316, 438, 505
BstMBI	GATC	5 cut(s)	166, 277, 313, 435, 502
BstMWI	GCNNNNNNNGC	6 cut(s)	341, 440, 548, 569, 581, 584
BstNI	CCWGG	2 cut(s)	62, 604
BstSCI	CCNGG	2 cut(s)	60, 602
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	3 cut(s)	562, 571, 584
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	166, 313
BstYI	RGATCY	2 cut(s)	166, 313
Bsu15I	ATCGAT	1 cut(s)	537
BsuRI	GGCC	1 cut(s)	244
BsuTUI	ATCGAT	1 cut(s)	537
BveI	ACCTGC	1 cut(s)	607
Cac8I	GCNNGC	1 cut(s)	432
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	492
Cfr13I	GGNCC	1 cut(s)	596
ClaI	ATCGAT	1 cut(s)	537
CviAII	CATG	4 cut(s)	336, 493, 506, 612
CviJI	RGCY	9 cut(s)	83, 94, 147, 154, 244, 430, 530, 575, 584
CviKI_1	RGCY	9 cut(s)	83, 94, 147, 154, 244, 430, 530, 575, 584
DdeI	CTNAG	1 cut(s)	579
DpnI	GATC	5 cut(s)	168, 279, 315, 437, 504
DpnII	GATC	5 cut(s)	166, 277, 313, 435, 502
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	596
Eco57I	CTGAAG	2 cut(s)	194, 303
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	2 cut(s)	60, 602
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	4 cut(s)	339, 496, 509, 615
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	4 cut(s)	335, 492, 505, 611
Fnu4HI	GCNGC	3 cut(s)	573, 576, 585
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	573, 576, 585
FspBI	CTAG	1 cut(s)	80
GluI	GCNGC	3 cut(s)	573, 576, 585
GsaI	CCCAGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	339, 496, 509, 615
HindIII	AAGCTT	1 cut(s)	428
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	3 cut(s)	115, 386, 493
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	327, 351
HpyCH4III	ACNGT	2 cut(s)	160, 178
HpyCH4V	TGCA	2 cut(s)	350, 587
HpyF10VI	GCNNNNNNNGC	6 cut(s)	341, 440, 548, 569, 581, 584
HpyF3I	CTNAG	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	339, 496, 509, 615
Kzo9I	GATC	5 cut(s)	166, 277, 313, 435, 502
Lsp1109I	GCAGC	3 cut(s)	562, 571, 584
LweI	GCATC	2 cut(s)	94, 529
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	2 cut(s)	172, 194
MalI	GATC	5 cut(s)	168, 279, 315, 437, 504
MboI	GATC	5 cut(s)	166, 277, 313, 435, 502
MboII	GAAGA	4 cut(s)	61, 200, 484, 536
MflI	RGATCY	2 cut(s)	166, 313
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	2 cut(s)	367, 380
MluI	ACGCGT	1 cut(s)	191
MnlI	CCTC	7 cut(s)	39, 123, 157, 234, 445, 461, 574
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	62, 604
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	2 cut(s)	62, 604
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	6 cut(s)	341, 440, 548, 569, 581, 584
NdeII	GATC	5 cut(s)	166, 277, 313, 435, 502
NlaIII	CATG	4 cut(s)	339, 496, 509, 615
NlaIV	GGNNCC	1 cut(s)	168
PagI	TCATGA	1 cut(s)	492
PctI	GAATGC	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	574, 577, 586
PpuMI	RGGWCCY	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	60, 602
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	2 cut(s)	60, 602
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	596
PspPPI	RGGWCCY	1 cut(s)	596
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	2 cut(s)	166, 313
PvuII	CAGCTG	1 cut(s)	575
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	3 cut(s)	573, 576, 585
Sau3AI	GATC	5 cut(s)	166, 277, 313, 435, 502
Sau96I	GGNCC	1 cut(s)	596
ScrFI	CCNGG	2 cut(s)	62, 604
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	6 cut(s)	63, 432, 456, 532, 577, 601
SfaNI	GCATC	2 cut(s)	94, 529
SinI	GGWCC	1 cut(s)	596
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	14, 449
SmoI	CTYRAG	2 cut(s)	14, 449
Sse9I	AATT	2 cut(s)	367, 380
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	60, 602
TaaI	ACNGT	2 cut(s)	160, 178
TaqI	TCGA	3 cut(s)	371, 537, 558
TasI	AATT	2 cut(s)	367, 380
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseI	GCWGC	3 cut(s)	572, 575, 584
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	596
XapI	RAATTY	1 cut(s)	380
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.