Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014480

Physical Location & Seq

Genomic Coordinates Forward (+)

81445697 .. 81449790

Gene Structure 4094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00143400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCTTGCCGCACCGATCTCGGAGAAGAAGATGGTGGGCTTTGACGGTGGGCTCGAGGTCGGCGAAGATTACGCCCGGGACATGCTTGTCGGCACCAATTTCGAGAAGAAGTACGCCCTCGAAGCCGTGCGTAAGGGTAACGCCGCCGTCGGCGTCCGTGGCACCGACACCATCGTTCTCGGCGTCGAGAAGAAGTCCACCGCTAAGCTTCAGGACTCCAGATCGGTGAGGAAGATTGTGAACCTGGACAATCACATTGCTCTAGCCTGTGCTGGGCTCAAAGCAGATGCTCGTGTCCTGATAAACAAGGCGAGGATTGAATGTCAAAGCCATAGGCTTACTGTTGAGGATCCAGTAACAGTTGAGTATATAACGCGTTACATTGCTGGTCTTCAGCAAAAGTACACGCAGAGTGGTGGTGTGAGGCCATTTGGTCTTTCAACTTTGATTGTTGGGTTTGATCCATACACGAATAAACCAGCACTCTATCAGACAGATCCTTCAGGGACTTTTTCAGCATGGAAAGCAAATGCAACGGGAAGGAACTCCAATTCGATAAGGGAATTTCTGGAGAAAAACTACAAAGAAACTTCCGGGCAAGACACCATAAAGCTTGCGATCCGTGCTTTGCTTGAGGTTGTTGAAAGTGGAGGGAAGAACATAGAAGTTGCTGTCATGACAAAGGATCATGGTCTGCGACAACTTGAAGAAGCTGAAATCGATGCTATTGTTGCTGACATCGAAGCAGAGAAAGCAGCTGCTGAGGCTGCAAAGAAAGGACCTGCCAGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

265

Amino Acids

28.76

Weight (kDa)

7.69

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	43 - 226	1.3e-55	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51260 AT3G51260 AT5G66140
fragaria_vesca	FvH4_1g11520
malus_domestica	MD02G1128200.v1.1 MD15G1243400.v1.1
prunus_persica	Prupe.7G170800_v2.0.a1
pyrus_communis	pycom02g10020 pycom15g21440
rosa_chinensis	RchiOBHm_Chr2g0099151
rosa_laevigata	RLG00000016851
rosa_multiflora	Rmu_sc0012098.1_g000001 Rmu_sc0012711.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143400
rosa_rugosa	Rorug02G0077200
rosa_samantha	Rh2AG126200
rosa_wichuraiana	Rw2G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	790
AccB1I	GGYRCC	2 cut(s)	92, 161
AccII	CGCG	1 cut(s)	376
AciI	CCGC	3 cut(s)	9, 144, 201
AclWI	GGATC	6 cut(s)	344, 357, 455, 491, 613, 693
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	3 cut(s)	194, 377, 486
AcyI	GRCGYC	2 cut(s)	153, 183
AfaI	GTAC	2 cut(s)	113, 404
AfiI	CCNNNNNNNGG	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	374
AgsI	TTSAA	4 cut(s)	320, 441, 644, 707
AjnI	CCWGG	2 cut(s)	243, 785
AluBI	AGCT	4 cut(s)	208, 613, 713, 758
AluI	AGCT	4 cut(s)	208, 613, 713, 758
AlwI	GGATC	6 cut(s)	344, 357, 455, 491, 613, 693
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	2 cut(s)	53, 75
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	3 cut(s)	755, 758, 767
ApoI	RAATTY	1 cut(s)	563
AspS9I	GGNCC	1 cut(s)	779
AsuC2I	CCSGG	3 cut(s)	76, 77, 595
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	2 cut(s)	53, 75
AvaII	GGWCC	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	349
BanI	GGYRCC	2 cut(s)	92, 161
BanII	GRGCYC	2 cut(s)	54, 279
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	383
BbvCI	CCTCAGC	1 cut(s)	762
BbvI	GCAGC	3 cut(s)	745, 754, 767
BccI	CCATC	2 cut(s)	25, 179
BceAI	ACGGC	2 cut(s)	110, 131
BcgI	CGANNNNNNTGC	3 cut(s)	34, 82, 116
BciT130I	CCWGG	2 cut(s)	245, 787
BcnI	CCSGG	3 cut(s)	76, 77, 595
BfaI	CTAG	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	790
BisI	GCNGC	5 cut(s)	9, 144, 756, 759, 768
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	10, 145, 757, 760, 769
Bme1390I	CCNGG	5 cut(s)	76, 77, 245, 595, 787
Bme18I	GGWCC	1 cut(s)	779
BmeT110I	CYCGRG	2 cut(s)	53, 75
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	3 cut(s)	94, 163, 351
BmrFI	CCNGG	5 cut(s)	76, 77, 245, 595, 787
BmsI	GCATC	2 cut(s)	277, 712
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	2 cut(s)	202, 590
Bpu10I	CCTNAGC	1 cut(s)	762
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	3 cut(s)	76, 77, 595
Bsa29I	ATCGAT	1 cut(s)	720
BsaHI	GRCGYC	2 cut(s)	153, 183
BsaJI	CCNNGG	3 cut(s)	75, 157, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	2 cut(s)	255, 381
BseBI	CCWGG	2 cut(s)	245, 787
BseCI	ATCGAT	1 cut(s)	720
BseDI	CCNNGG	3 cut(s)	75, 157, 786
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMI	GCAATG	2 cut(s)	255, 381
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	745, 754, 767
BseYI	CCCAGC	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	1 cut(s)	427
BshNI	GGYRCC	2 cut(s)	92, 161
BshVI	ATCGAT	1 cut(s)	720
BsiHKCI	CYCGRG	2 cut(s)	53, 75
BsiSI	CCGG	2 cut(s)	76, 594
BslFI	GGGAC	2 cut(s)	92, 520
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	92, 520
BsnI	GGCC	1 cut(s)	427
BsoBI	CYCGRG	2 cut(s)	53, 75
Bsp1286I	GDGCHC	2 cut(s)	54, 279
Bsp143I	GATC	7 cut(s)	15, 221, 349, 460, 496, 618, 685
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	9, 144, 201
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	1 cut(s)	754
BspDI	ATCGAT	1 cut(s)	720
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	3 cut(s)	94, 163, 351
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	6 cut(s)	344, 357, 455, 491, 613, 693
BspT107I	GGYRCC	2 cut(s)	92, 161
BsrDI	GCAATG	2 cut(s)	255, 381
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	3 cut(s)	75, 157, 786
BssMI	GATC	7 cut(s)	15, 221, 349, 460, 496, 618, 685
BssNI	GRCGYC	2 cut(s)	153, 183
BssSI	CACGAG	1 cut(s)	291
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	245, 787
Bst4CI	ACNGT	3 cut(s)	47, 343, 361
BstACI	GRCGYC	2 cut(s)	153, 183
BstC8I	GCNNGC	2 cut(s)	6, 615
BstDEI	CTNAG	2 cut(s)	204, 762
BstDSI	CCRYGG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	376
BstKTI	GATC	7 cut(s)	18, 224, 352, 463, 499, 621, 688
BstMBI	GATC	7 cut(s)	15, 221, 349, 460, 496, 618, 685
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 159, 524, 623, 731, 752, 764, 767
BstNI	CCWGG	2 cut(s)	245, 787
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	5 cut(s)	74, 75, 243, 593, 785
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	745, 754, 767
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	2 cut(s)	349, 496
BstYI	RGATCY	2 cut(s)	349, 496
Bsu15I	ATCGAT	1 cut(s)	720
BsuRI	GGCC	1 cut(s)	427
BsuTUI	ATCGAT	1 cut(s)	720
BtgI	CCRYGG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	2 cut(s)	6, 615
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	675
Cfr13I	GGNCC	1 cut(s)	779
Cfr9I	CCCGGG	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	720
CseI	GACGC	2 cut(s)	142, 172
Csp6I	GTAC	2 cut(s)	112, 403
CviAII	CATG	5 cut(s)	82, 519, 676, 689, 795
CviQI	GTAC	2 cut(s)	112, 403
DdeI	CTNAG	2 cut(s)	204, 762
DpnI	GATC	7 cut(s)	17, 223, 351, 462, 498, 620, 687
DpnII	GATC	7 cut(s)	15, 221, 349, 460, 496, 618, 685
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
Eco24I	GRGCYC	2 cut(s)	54, 279
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	3 cut(s)	194, 377, 486
Eco88I	CYCGRG	2 cut(s)	53, 75
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	243, 785
EcoT38I	GRGCYC	2 cut(s)	54, 279
FaeI	CATG	5 cut(s)	85, 522, 679, 692, 798
FaqI	GGGAC	2 cut(s)	92, 520
FatI	CATG	5 cut(s)	81, 518, 675, 688, 794
Fnu4HI	GCNGC	5 cut(s)	9, 144, 756, 759, 768
FriOI	GRGCYC	2 cut(s)	54, 279
Fsp4HI	GCNGC	5 cut(s)	9, 144, 756, 759, 768
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	5 cut(s)	9, 144, 756, 759, 768
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	2 cut(s)	202, 590
HaeIII	GGCC	1 cut(s)	427
HapII	CCGG	2 cut(s)	76, 594
HgaI	GACGC	2 cut(s)	142, 172
Hin1I	GRCGYC	2 cut(s)	153, 183
Hin1II	CATG	5 cut(s)	85, 522, 679, 692, 798
HindIII	AAGCTT	2 cut(s)	206, 611
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	76, 594
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	198, 241, 405
Hpy188I	TCNGA	2 cut(s)	22, 492
Hpy188III	TCNNGA	7 cut(s)	103, 187, 212, 219, 298, 569, 676
Hpy8I	GTNNAC	3 cut(s)	198, 241, 405
Hpy99I	CGWCG	2 cut(s)	152, 188
HpyAV	CCTTC	2 cut(s)	510, 534
HpyCH4III	ACNGT	3 cut(s)	47, 343, 361
HpyCH4V	TGCA	2 cut(s)	533, 770
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 159, 524, 623, 731, 752, 764, 767
HpyF3I	CTNAG	2 cut(s)	204, 762
Hsp92I	GRCGYC	2 cut(s)	153, 183
Hsp92II	CATG	5 cut(s)	85, 522, 679, 692, 798
Kzo9I	GATC	7 cut(s)	15, 221, 349, 460, 496, 618, 685
Lsp1109I	GCAGC	3 cut(s)	745, 754, 767
LweI	GCATC	2 cut(s)	277, 712
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	137, 355, 377
MalI	GATC	7 cut(s)	17, 223, 351, 462, 498, 620, 687
MboI	GATC	7 cut(s)	15, 221, 349, 460, 496, 618, 685
MboII	GAAGA	9 cut(s)	37, 40, 77, 118, 202, 244, 383, 667, 719
MflI	RGATCY	2 cut(s)	349, 496
MhlI	GDGCHC	2 cut(s)	54, 279
MluCI	AATT	3 cut(s)	97, 550, 563
MluI	ACGCGT	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	9 cut(s)	49, 128, 222, 306, 340, 417, 628, 644, 757
MspA1I	CMGCKG	1 cut(s)	758
MspI	CCGG	2 cut(s)	76, 594
MspR9I	CCNGG	5 cut(s)	76, 77, 245, 595, 787
MvaI	CCWGG	2 cut(s)	245, 787
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	8 cut(s)	122, 159, 524, 623, 731, 752, 764, 767
NciI	CCSGG	3 cut(s)	76, 77, 595
NdeII	GATC	7 cut(s)	15, 221, 349, 460, 496, 618, 685
NlaIII	CATG	5 cut(s)	85, 522, 679, 692, 798
NlaIV	GGNNCC	3 cut(s)	94, 163, 351
NmeAIII	GCCGAG	1 cut(s)	159
NspI	RCATGY	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 60, 180
PkrI	GCNGC	5 cut(s)	10, 145, 757, 760, 769
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	779
Psp5II	RGGWCCY	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	243, 785
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	2 cut(s)	243, 785
PspN4I	GGNNCC	3 cut(s)	94, 163, 351
PspPI	GGNCC	1 cut(s)	779
PspPPI	RGGWCCY	1 cut(s)	779
PspXI	VCTCGAGB	1 cut(s)	53
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	349, 496
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	2 cut(s)	113, 404
RsaNI	GTAC	2 cut(s)	112, 403
SatI	GCNGC	5 cut(s)	9, 144, 756, 759, 768
Sau3AI	GATC	7 cut(s)	15, 221, 349, 460, 496, 618, 685
Sau96I	GGNCC	1 cut(s)	779
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	5 cut(s)	76, 77, 245, 595, 787
SduI	GDGCHC	2 cut(s)	54, 279
SetI	ASST	8 cut(s)	60, 210, 246, 615, 639, 715, 760, 784
SfaNI	GCATC	2 cut(s)	277, 712
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	779
SlaI	CTCGAG	1 cut(s)	53
SmaI	CCCGGG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	53, 632
SmoI	CTYRAG	2 cut(s)	53, 632
Sse9I	AATT	3 cut(s)	97, 550, 563
SsiI	CCGC	3 cut(s)	9, 144, 201
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	5 cut(s)	74, 75, 243, 593, 785
TaaI	ACNGT	3 cut(s)	47, 343, 361
TaqI	TCGA	7 cut(s)	54, 102, 120, 186, 554, 720, 741
TasI	AATT	3 cut(s)	97, 550, 563
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	11, 146
TseI	GCWGC	3 cut(s)	755, 758, 767
TspGWI	ACGGA	2 cut(s)	146, 611
TspMI	CCCGGG	1 cut(s)	75
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	1 cut(s)	563
XceI	RCATGY	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	53
XmaI	CCCGGG	1 cut(s)	75
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.