Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014480

Physical Location & Seq

Genomic Coordinates Reverse (-)

6928432 .. 6930804

Gene Structure 2373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACCATTTTGCCCCACTGTGCGAAGAGAAAATTAACAAGTGACTTGTGGCCTAAGTCGAGAATAGCAAAATATAATTGTCACTGCGAAAGAGAACGCCCAAACCGAAAAGGCACCAGCTCCCCGGAAAACCCCAGATCAGAAGAAAGAAGAAGAAGACGAGGCAGTAGAAAGATGGCGAGGTACGACAGAGCCATTACAGTTTTCTCTCCAGACGGTCATCTCTTCCAGGTCGAGTACGCGCTCGAGGCGGTCCGTAAGGGTAACGCCGCCGTCGGCGTCCGTGGCACCGACACCATTGTTCTCGGCGTCGAGAAGAAGTCCGCCGCTAAGCTCCAAGACTCCAGATCGGTGAGGAAGATTGTGAACCTGGACAATCACATTGCTCTAGCCTGCGCTGGGCTCAAAGCAGATGCTCGTGTGTTGATAAACAAGGCACGGATTGAATGTCAAAGCCACAGGCTTACTGTTGAGGATCCAGTGACTGTCGAGTACATAACGCGATACATTGCTGGTCTTCAGCAAAAGTACACACAGAGTGGTGGTGTGAGACCATTTGGTCTTTCAACTTTGATTGTCGGATTTGATCCATACACAGATTCACCATCACTATATCAGACAGATCCTTCTGGGACTTTTTCAGCATGGAAAGCCAATGCAACTGGAAGAAACTCCAATTCGATAAGGGAGTTTCTGGAGAAGAACTACAAAGAAACTTCTGGGCAAGAAACTGTAAAGCTTGCAATCCGGGCTTTGCTTGAGGTTGTTGAGAGTGGAGGGAAAAACATAGAAGTTGCGGTGATGACGAAGGATCACGGTCTGAAGCAACTTGAAGAAGCTGAAATTGATGCCATTGTTGCTGACATAGAAGCAGAGAAAGCAGCTGCCGAGGCCGCAAAGAAGGGACCTCCCAGGGAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

308

Amino Acids

34.05

Weight (kDa)

9.45

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	62 - 84	7.8e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	85 - 268	9.2e-55	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51260 AT3G51260 AT5G66140
fragaria_vesca	FvH4_1g11520
malus_domestica	MD02G1128200.v1.1 MD15G1243400.v1.1
prunus_persica	Prupe.7G170800_v2.0.a1
pyrus_communis	pycom02g10020 pycom15g21440
rosa_chinensis	RchiOBHm_Chr2g0099151
rosa_laevigata	RLG00000016851
rosa_multiflora	Rmu_sc0012098.1_g000001 Rmu_sc0012711.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143400
rosa_rugosa	Rorug02G0077200
rosa_samantha	Rh2AG126200
rosa_wichuraiana	Rw2G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	558
AccB1I	GGYRCC	2 cut(s)	113, 287
AccII	CGCG	2 cut(s)	242, 502
AciI	CCGC	6 cut(s)	251, 270, 324, 327, 797, 894
AclWI	GGATC	5 cut(s)	470, 483, 581, 617, 819
AcuI	CTGAAG	2 cut(s)	503, 842
AcyI	GRCGYC	2 cut(s)	279, 309
AdeI	CACNNNGTG	1 cut(s)	539
AfaI	GTAC	4 cut(s)	185, 239, 494, 530
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	446, 567, 833
AjnI	CCWGG	3 cut(s)	228, 369, 911
AluBI	AGCT	5 cut(s)	120, 334, 739, 839, 884
AluI	AGCT	5 cut(s)	120, 334, 739, 839, 884
Alw26I	GTCTC	2 cut(s)	544, 911
AlwI	GGATC	5 cut(s)	470, 483, 581, 617, 819
AlwNI	CAGNNNCTG	1 cut(s)	485
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	50, 891
ApeKI	GCWGC	2 cut(s)	881, 884
AspLEI	GCGC	2 cut(s)	244, 398
AspS9I	GGNCC	2 cut(s)	253, 905
AsuC2I	CCSGG	2 cut(s)	125, 749
AsuHPI	GGTGA	3 cut(s)	364, 594, 811
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	253, 905
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	2 cut(s)	113, 287
BanII	GRGCYC	1 cut(s)	405
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	2 cut(s)	163, 509
BbvI	GCAGC	2 cut(s)	871, 893
BccI	CCATC	2 cut(s)	169, 613
BceAI	ACGGC	1 cut(s)	257
BciT130I	CCWGG	3 cut(s)	230, 371, 913
BcnI	CCSGG	2 cut(s)	125, 749
BcoDI	GTCTC	2 cut(s)	544, 911
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	5 cut(s)	270, 327, 882, 885, 894
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	5 cut(s)	271, 328, 883, 886, 895
Bme1390I	CCNGG	5 cut(s)	125, 230, 371, 749, 913
Bme18I	GGWCC	2 cut(s)	253, 905
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	253, 905
BmiI	GGNNCC	4 cut(s)	115, 289, 477, 906
BmrFI	CCNGG	5 cut(s)	125, 230, 371, 749, 913
BmsI	GCATC	2 cut(s)	403, 838
BpiI	GAAGAC	2 cut(s)	163, 509
BpmI	CTGGAG	3 cut(s)	195, 328, 716
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	779
BpuMI	CCSGG	2 cut(s)	125, 749
BsaHI	GRCGYC	2 cut(s)	279, 309
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	5 cut(s)	123, 283, 888, 911, 912
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	479, 667
Bse3DI	GCAATG	2 cut(s)	381, 507
BseBI	CCWGG	3 cut(s)	230, 371, 913
BseDI	CCNNGG	5 cut(s)	123, 283, 888, 911, 912
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	2 cut(s)	381, 507
BseNI	ACTGG	2 cut(s)	479, 667
BseXI	GCAGC	2 cut(s)	871, 893
BseYI	CCCAGC	1 cut(s)	398
Bsh1236I	CGCG	2 cut(s)	242, 502
BshFI	GGCC	2 cut(s)	52, 893
BshNI	GGYRCC	2 cut(s)	113, 287
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	125, 748
BslFI	GGGAC	2 cut(s)	646, 918
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	544, 911
BsmFI	GGGAC	2 cut(s)	646, 918
BsnI	GGCC	2 cut(s)	52, 893
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	6 cut(s)	137, 347, 475, 586, 622, 811
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	6 cut(s)	251, 270, 324, 327, 797, 894
BspANI	GGCC	2 cut(s)	52, 893
BspFNI	CGCG	2 cut(s)	242, 502
BspLI	GGNNCC	4 cut(s)	115, 289, 477, 906
BspPI	GGATC	5 cut(s)	470, 483, 581, 617, 819
BspT107I	GGYRCC	2 cut(s)	113, 287
BspTNI	GGTCTC	1 cut(s)	544
BsrDI	GCAATG	2 cut(s)	381, 507
BsrI	ACTGG	2 cut(s)	479, 667
BssECI	CCNNGG	5 cut(s)	123, 283, 888, 911, 912
BssMI	GATC	6 cut(s)	137, 347, 475, 586, 622, 811
BssNI	GRCGYC	2 cut(s)	279, 309
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	3 cut(s)	230, 371, 913
Bst4CI	ACNGT	7 cut(s)	20, 202, 218, 469, 487, 733, 818
Bst6I	CTCTTC	2 cut(s)	20, 230
BstACI	GRCGYC	2 cut(s)	279, 309
BstC8I	GCNNGC	2 cut(s)	394, 741
BstDEI	CTNAG	2 cut(s)	54, 330
BstDSI	CCRYGG	1 cut(s)	283
BstFNI	CGCG	2 cut(s)	242, 502
BstHHI	GCGC	2 cut(s)	244, 398
BstKTI	GATC	6 cut(s)	140, 350, 478, 589, 625, 814
BstMAI	GTCTC	2 cut(s)	544, 911
BstMBI	GATC	6 cut(s)	137, 347, 475, 586, 622, 811
BstMWI	GCNNNNNNNGC	8 cut(s)	248, 285, 650, 749, 857, 878, 890, 893
BstNI	CCWGG	3 cut(s)	230, 371, 913
BstSCI	CCNGG	5 cut(s)	123, 228, 369, 747, 911
BstUI	CGCG	2 cut(s)	242, 502
BstV1I	GCAGC	2 cut(s)	871, 893
BstV2I	GAAGAC	2 cut(s)	163, 509
BstX2I	RGATCY	2 cut(s)	475, 622
BstYI	RGATCY	2 cut(s)	475, 622
BsuRI	GGCC	2 cut(s)	52, 893
BtgI	CCRYGG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	3 cut(s)	16, 82, 486
Cac8I	GCNNGC	2 cut(s)	394, 741
CaiI	CAGNNNCTG	1 cut(s)	485
CfoI	GCGC	2 cut(s)	244, 398
Cfr13I	GGNCC	2 cut(s)	253, 905
CpoI	CGGWCCG	1 cut(s)	253
CseI	GACGC	2 cut(s)	268, 298
Csp6I	GTAC	4 cut(s)	184, 238, 493, 529
CspI	CGGWCCG	1 cut(s)	253
CviAII	CATG	2 cut(s)	645, 921
CviQI	GTAC	4 cut(s)	184, 238, 493, 529
DdeI	CTNAG	2 cut(s)	54, 330
DpnI	GATC	6 cut(s)	139, 349, 477, 588, 624, 813
DpnII	GATC	6 cut(s)	137, 347, 475, 586, 622, 811
DraIII	CACNNNGTG	1 cut(s)	539
DrdI	GACNNNNNNGTC	1 cut(s)	558
DseDI	GACNNNNNNGTC	1 cut(s)	558
Eam1104I	CTCTTC	2 cut(s)	20, 230
EarI	CTCTTC	2 cut(s)	20, 230
EciI	GGCGGA	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	253, 905
Eco57I	CTGAAG	2 cut(s)	503, 842
Eco88I	CYCGRG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	905
EcoRII	CCWGG	3 cut(s)	228, 369, 911
EcoT38I	GRGCYC	1 cut(s)	405
FaeI	CATG	2 cut(s)	648, 924
FaiI	YATR	8 cut(s)	75, 497, 592, 613, 646, 788, 866, 922
FaqI	GGGAC	2 cut(s)	646, 918
FatI	CATG	2 cut(s)	644, 920
Fnu4HI	GCNGC	5 cut(s)	270, 327, 882, 885, 894
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	5 cut(s)	270, 327, 882, 885, 894
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	2 cut(s)	243, 397
GluI	GCNGC	5 cut(s)	270, 327, 882, 885, 894
GsaI	CCCAGC	1 cut(s)	402
GsuI	CTGGAG	3 cut(s)	195, 328, 716
HaeIII	GGCC	2 cut(s)	52, 893
HapII	CCGG	2 cut(s)	125, 748
HgaI	GACGC	2 cut(s)	268, 298
HhaI	GCGC	2 cut(s)	244, 398
Hin1I	GRCGYC	2 cut(s)	279, 309
Hin1II	CATG	2 cut(s)	648, 924
Hin6I	GCGC	2 cut(s)	242, 396
HinP1I	GCGC	2 cut(s)	242, 396
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	2 cut(s)	341, 599
HpaII	CCGG	2 cut(s)	125, 748
HphI	GGTGA	3 cut(s)	364, 594, 811
Hpy166II	GTNNAC	2 cut(s)	367, 531
Hpy188I	TCNGA	4 cut(s)	142, 581, 618, 822
Hpy188III	TCNNGA	5 cut(s)	60, 212, 313, 345, 695
Hpy8I	GTNNAC	2 cut(s)	367, 531
Hpy99I	CGWCG	2 cut(s)	278, 314
HpyAV	CCTTC	3 cut(s)	636, 802, 895
HpyCH4III	ACNGT	7 cut(s)	20, 202, 218, 469, 487, 733, 818
HpyCH4V	TGCA	2 cut(s)	659, 743
HpyF10VI	GCNNNNNNNGC	8 cut(s)	248, 285, 650, 749, 857, 878, 890, 893
HpyF3I	CTNAG	2 cut(s)	54, 330
Hsp92I	GRCGYC	2 cut(s)	279, 309
Hsp92II	CATG	2 cut(s)	648, 924
HspAI	GCGC	2 cut(s)	242, 396
Kzo9I	GATC	6 cut(s)	137, 347, 475, 586, 622, 811
LmnI	GCTCC	2 cut(s)	125, 339
Lsp1109I	GCAGC	2 cut(s)	871, 893
LweI	GCATC	2 cut(s)	403, 838
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	4 cut(s)	41, 80, 263, 481
MalI	GATC	6 cut(s)	139, 349, 477, 588, 624, 813
MboI	GATC	6 cut(s)	137, 347, 475, 586, 622, 811
MflI	RGATCY	2 cut(s)	475, 622
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	4 cut(s)	32, 76, 676, 843
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	9 cut(s)	155, 174, 241, 348, 466, 754, 770, 883, 918
MseI	TTAA	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	2 cut(s)	125, 748
MspR9I	CCNGG	5 cut(s)	125, 230, 371, 749, 913
MvaI	CCWGG	3 cut(s)	230, 371, 913
MvnI	CGCG	2 cut(s)	242, 502
MwoI	GCNNNNNNNGC	8 cut(s)	248, 285, 650, 749, 857, 878, 890, 893
NciI	CCSGG	2 cut(s)	125, 749
NdeII	GATC	6 cut(s)	137, 347, 475, 586, 622, 811
NlaIII	CATG	2 cut(s)	648, 924
NlaIV	GGNNCC	4 cut(s)	115, 289, 477, 906
NmeAIII	GCCGAG	2 cut(s)	285, 913
NmuCI	GTSAC	3 cut(s)	41, 80, 481
PaeR7I	CTCGAG	1 cut(s)	245
PasI	CCCWGGG	1 cut(s)	912
PcsI	WCGNNNNNNNCGW	1 cut(s)	103
PfeI	GAWTC	1 cut(s)	599
PkrI	GCNGC	5 cut(s)	271, 328, 883, 886, 895
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	905
Psp5II	RGGWCCY	1 cut(s)	905
Psp6I	CCWGG	3 cut(s)	228, 369, 911
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	3 cut(s)	228, 369, 911
PspN4I	GGNNCC	4 cut(s)	115, 289, 477, 906
PspPI	GGNCC	2 cut(s)	253, 905
PspPPI	RGGWCCY	1 cut(s)	905
PspXI	VCTCGAGB	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	475, 622
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	4 cut(s)	185, 239, 494, 530
RsaNI	GTAC	4 cut(s)	184, 238, 493, 529
Rsr2I	CGGWCCG	1 cut(s)	253
RsrII	CGGWCCG	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	5 cut(s)	270, 327, 882, 885, 894
Sau3AI	GATC	6 cut(s)	137, 347, 475, 586, 622, 811
Sau96I	GGNCC	2 cut(s)	253, 905
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	5 cut(s)	125, 230, 371, 749, 913
SduI	GDGCHC	1 cut(s)	405
SfaNI	GCATC	2 cut(s)	403, 838
Sfr274I	CTCGAG	1 cut(s)	245
SinI	GGWCC	2 cut(s)	253, 905
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	245, 758
SmoI	CTYRAG	2 cut(s)	245, 758
Sse9I	AATT	4 cut(s)	32, 76, 676, 843
SsiI	CCGC	6 cut(s)	251, 270, 324, 327, 797, 894
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	5 cut(s)	123, 228, 369, 747, 911
TaaI	ACNGT	7 cut(s)	20, 202, 218, 469, 487, 733, 818
TaqI	TCGA	6 cut(s)	59, 234, 246, 312, 489, 680
TasI	AATT	4 cut(s)	32, 76, 676, 843
TatI	WGTACW	2 cut(s)	492, 528
TauI	GCSGC	3 cut(s)	272, 329, 896
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	3 cut(s)	23, 89, 486
TseFI	GTSAC	3 cut(s)	41, 80, 481
TseI	GCWGC	2 cut(s)	881, 884
Tsp45I	GTSAC	3 cut(s)	41, 80, 481
TspGWI	ACGGA	3 cut(s)	245, 272, 454
TspRI	CASTG	3 cut(s)	23, 89, 486
VpaK11BI	GGWCC	2 cut(s)	253, 905
XhoI	CTCGAG	1 cut(s)	245
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.