Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012098.1

Orthogroup ID

OG0014480

Physical Location & Seq

Genomic Coordinates Forward (+)

897 .. 2072

Gene Structure 1176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012098.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atggcgaggtacgatagggccattacagtcttttctcccgacggccatctcttccaggtcgagtacgccctcgaagccgtgcgtaagggtaacgccgccgtcggcgtccgtggcaccgacaccatcgttcttggcgtcgagaagaagtccaccgctaagctgcaggactccagatcagtgaggaagattgtgaacctggacaatcacattgctctagcctgtgctgggctcaaagcagatgctcgtgtcctgataaacaaggcgaggattgaatgtcaaagccataggcttactgttgaggatccagtaacagttgagtatataacgcgctacattgctggtcttcagcaaaagtacacgcagagtggtggtgtgaggccatttggtctttcaactttgattgttgggtttgatccatacacgagtaaaccagcactctatcgaatcggtattagctctagttttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

156

Amino Acids

17.06

Weight (kDa)

9.58

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51260 AT3G51260 AT5G66140
fragaria_vesca	FvH4_1g11520
malus_domestica	MD02G1128200.v1.1 MD15G1243400.v1.1
prunus_persica	Prupe.7G170800_v2.0.a1
pyrus_communis	pycom02g10020 pycom15g21440
rosa_chinensis	RchiOBHm_Chr2g0099151
rosa_laevigata	RLG00000016851
rosa_multiflora	Rmu_sc0012098.1_g000001 Rmu_sc0012711.1_g000003
rosa_roxburghii	Rroxscaffold_2G00143400
rosa_rugosa	Rorug02G0077200
rosa_samantha	Rh2AG126200
rosa_wichuraiana	Rw2G009730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	1 cut(s)	328
AciI	CCGC	2 cut(s)	96, 153
AclWI	GGATC	3 cut(s)	296, 309, 407
AcoI	YGGCCR	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	2 cut(s)	105, 135
AfaI	GTAC	3 cut(s)	11, 65, 356
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	272, 393
AjnI	CCWGG	2 cut(s)	54, 195
AluBI	AGCT	2 cut(s)	160, 456
AluI	AGCT	2 cut(s)	160, 456
AlwI	GGATC	3 cut(s)	296, 309, 407
AoxI	GGCC	3 cut(s)	18, 43, 377
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	18
BamHI	GGATCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	2 cut(s)	243, 421
BbsI	GAAGAC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	54, 131
BceAI	ACGGC	3 cut(s)	58, 62, 83
BciT130I	CCWGG	2 cut(s)	56, 197
BfaI	CTAG	2 cut(s)	215, 459
BfmI	CTRYAG	1 cut(s)	161
BisI	GCNGC	2 cut(s)	96, 161
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	2 cut(s)	97, 162
Bme1390I	CCNGG	2 cut(s)	56, 197
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	115, 303
BmrFI	CCNGG	2 cut(s)	56, 197
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	105, 135
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	207, 333
BseBI	CCWGG	2 cut(s)	56, 197
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMI	GCAATG	2 cut(s)	207, 333
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	147
BseYI	CCCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	328
BshFI	GGCC	3 cut(s)	20, 45, 379
BshNI	GGYRCC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	225
BsnI	GGCC	3 cut(s)	20, 45, 379
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	173, 301, 412
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	96, 153
BspANI	GGCC	3 cut(s)	20, 45, 379
BspFNI	CGCG	1 cut(s)	328
BspLI	GGNNCC	2 cut(s)	115, 303
BspMAI	CTGCAG	1 cut(s)	165
BspPI	GGATC	3 cut(s)	296, 309, 407
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	2 cut(s)	207, 333
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	3 cut(s)	173, 301, 412
BssNI	GRCGYC	2 cut(s)	105, 135
BssSI	CACGAG	2 cut(s)	243, 421
Bst2BI	CACGAG	2 cut(s)	243, 421
Bst2UI	CCWGG	2 cut(s)	56, 197
Bst4CI	ACNGT	3 cut(s)	28, 295, 313
Bst6I	CTCTTC	1 cut(s)	56
BstACI	GRCGYC	2 cut(s)	105, 135
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	176, 304, 415
BstMBI	GATC	3 cut(s)	173, 301, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 111
BstNI	CCWGG	2 cut(s)	56, 197
BstSCI	CCNGG	2 cut(s)	54, 195
BstSFI	CTRYAG	1 cut(s)	161
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	3 cut(s)	20, 45, 379
BtgI	CCRYGG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	183
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	18
CseI	GACGC	2 cut(s)	94, 124
Csp6I	GTAC	3 cut(s)	10, 64, 355
CviQI	GTAC	3 cut(s)	10, 64, 355
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	175, 303, 414
DpnII	GATC	3 cut(s)	173, 301, 412
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	54, 195
EcoT38I	GRGCYC	1 cut(s)	231
FaiI	YATR	4 cut(s)	285, 321, 323, 418
Fnu4HI	GCNGC	2 cut(s)	96, 161
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	96, 161
FspBI	CTAG	2 cut(s)	215, 459
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	2 cut(s)	96, 161
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	20, 45, 379
HgaI	GACGC	2 cut(s)	94, 124
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	2 cut(s)	105, 135
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	167, 444
Hpy166II	GTNNAC	4 cut(s)	150, 193, 357, 428
Hpy188III	TCNNGA	4 cut(s)	38, 139, 171, 250
Hpy8I	GTNNAC	4 cut(s)	150, 193, 357, 428
Hpy99I	CGWCG	3 cut(s)	44, 104, 140
HpyCH4III	ACNGT	3 cut(s)	28, 295, 313
HpyCH4V	TGCA	1 cut(s)	163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 111
HpyF3I	CTNAG	1 cut(s)	156
Hsp92I	GRCGYC	2 cut(s)	105, 135
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	173, 301, 412
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	215, 459
MaeIII	GTNAC	2 cut(s)	89, 307
MalI	GATC	3 cut(s)	175, 303, 414
MboI	GATC	3 cut(s)	173, 301, 412
MboII	GAAGA	4 cut(s)	43, 154, 196, 335
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	80, 174, 258, 292, 369
MspR9I	CCNGG	2 cut(s)	56, 197
MvaI	CCWGG	2 cut(s)	56, 197
MvnI	CGCG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	74, 111
NdeII	GATC	3 cut(s)	173, 301, 412
NlaIV	GGNNCC	2 cut(s)	115, 303
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	97, 162
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	2 cut(s)	54, 195
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	54, 195
PspN4I	GGNNCC	2 cut(s)	115, 303
PspPI	GGNCC	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	3 cut(s)	11, 65, 356
RsaNI	GTAC	3 cut(s)	10, 64, 355
SatI	GCNGC	2 cut(s)	96, 161
Sau3AI	GATC	3 cut(s)	173, 301, 412
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	56, 197
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	5 cut(s)	11, 60, 162, 198, 458
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	161
SsiI	CCGC	2 cut(s)	96, 153
SspMI	CTAG	2 cut(s)	215, 459
StyD4I	CCNGG	2 cut(s)	54, 195
TaaI	ACNGT	3 cut(s)	28, 295, 313
TaqI	TCGA	4 cut(s)	60, 72, 138, 442
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	444
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	1 cut(s)	160
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	183
XspI	CTAG	2 cut(s)	215, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.